Revise the plugin documentation that you find under
MITK-build\Documentation\index.html
MITK User Manual --> MITK Plugin Manuals --> Segmentation
Check both, images and description and whether the links lead to the correct destination.
Revise the plugin documentation that you find under
MITK-build\Documentation\index.html
MITK User Manual --> MITK Plugin Manuals --> Segmentation
Check both, images and description and whether the links lead to the correct destination.
Status | Assigned | Task | ||
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Restricted Maniphest Task | ||||
Resolved | kompan | T27093 [MITKDoc] Revise Segmentation Plugin |
Pointed out by @kislinsk in T27095 but as stated before, it belongs to this documentation task not the multi-label one ;)
Notes for the Region Growing 2D tool:
Another addition for the documentation:
Watershed tool:
Some notes on filter parameters
Two parameters control the output of this filter, Threshold and Level. The units of both parameters are percentage points of the maximum height value in the input. Threshold is used to set the absolute minimum height value used during processing. Raising this threshold percentage effectively decreases the number of local minima in the input, resulting in an initial segmentation with fewer regions. The assumption is that the shallow regions that thresholding removes are of of less interest. The Level parameter controls the depth of metaphorical flooding of the image. That is, it sets the maximum saliency value of interest in the result. Raising and lowering the Level influences the number of segments in the basic segmentation that are merged to produce the final output. A level of 1.0 is analogous to flooding the image up to a depth that is 100 percent of the maximum value in the image. A level of 0.0 produces the basic segmentation, which will typically be very oversegmented. Level values of interest are typically low (i.e. less than about 0.40 or 40% ), since higher values quickly start to undersegment the image. The Level parameter can be used to create a hierarchy of output images in constant time once an initial segmentation is done. A typical scenario might go like this: For the initial execution of the filter, set the Level to the maximum saliency value that you anticipate might be of interest. Once the initial Update() of this process object has finished, the Level can be manipulated anywhere below the initial setting without triggering a full update of the segmentation mini-pipeline. All that is now be required to produce the new output is a simple relabeling of the output image. Threshold and Level parameters are controlled through the class' Get/SetThreshold() and Get/SetLevel() methods.