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thomass (Sarina Thomas)
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Projects (11)

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User Since
Aug 1 2016, 12:10 PM (216 w, 3 d)

Recent Activity

Fri, Sep 18

thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I think the things you changed are all reasonable, the things I would add (I can not do it atm because I don't have access to the document)

Fri, Sep 18, 2:39 PM · Restricted Project, Cleared, MITK (2020)

Wed, Sep 16

thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I agree :)

Wed, Sep 16, 1:35 PM · Restricted Project, Cleared, MITK (2020)
thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

just started to have a look.

Wed, Sep 16, 12:06 PM · Restricted Project, Cleared, MITK (2020)

Fri, Sep 4

thomass committed rMITK0ec8c07ca152: T27691 changed subpages in Phenotyping doc to refs to fix linkingproblems (authored by thomass).
T27691 changed subpages in Phenotyping doc to refs to fix linkingproblems
Fri, Sep 4, 8:58 PM
thomass closed T27691: [MITKDoc] Documentation links reference "The Phenotyping" subpages as Resolved by committing rMITK0ec8c07ca152: T27691 changed subpages in Phenotyping doc to refs to fix linkingproblems.
Fri, Sep 4, 8:58 PM · MITK (2020)

Thu, Sep 3

kalali awarded T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation a Cup of Joe token.
Thu, Sep 3, 10:21 PM · Missing Info, Restricted Project, MITK (2020)
thomass updated the task description for T27703: [Segmentation] Watershed segmentation crashes on images when high threshold is chosen.
Thu, Sep 3, 5:05 PM · MITK
thomass triaged T27703: [Segmentation] Watershed segmentation crashes on images when high threshold is chosen as Normal priority.
Thu, Sep 3, 5:03 PM · MITK
thomass updated subscribers of T27184: Clipping plane deformation tool doesn't show updates in 3d window.

@kislinsk @kalali I have in mind that you recently had a look at the ClippingPlane. Since the clipping plane does not show the expected behavior, does it make sense to rewrite the documentation for it? I have in mind you even considered to declare it deprecated.

Thu, Sep 3, 3:47 PM · Missing Info, Restricted Project, MITK (2020)
thomass updated subscribers of T27093: [MITKDoc] Revise Segmentation Plugin.

Pointed out by @kislinsk in T27095 but as stated before, it belongs to this documentation task not the multi-label one ;)

Thu, Sep 3, 10:41 AM · MITK (2020)

Wed, Sep 2

thomass added a revision to T27095: [MITKDoc] Revise MultiLabel Segmentation Plugin Documentation: Unknown Object (Differential Revision).
Wed, Sep 2, 1:10 PM · MITK (2020)
thomass updated the task description for T27698: [Segmentation] Segmentation toolbox is never enabled in multi-label segmentation view.
Wed, Sep 2, 10:24 AM · MITK (2020)
thomass triaged T27698: [Segmentation] Segmentation toolbox is never enabled in multi-label segmentation view as High priority.
Wed, Sep 2, 10:24 AM · MITK (2020)
thomass added a comment to T27697: Documentation feedback received from testers .

should work now

Wed, Sep 2, 10:22 AM · MITK
thomass updated the task description for T27697: Documentation feedback received from testers .
Wed, Sep 2, 10:21 AM · MITK
thomass added a comment to T27696: Dicom loading does not work for some 4D data with the latest installer.

I just received an E-Mail that the problem could be related to the data source (some server or network drive) so maybe no MITK issue after all :)

Wed, Sep 2, 10:04 AM · DICOM, Missing Info, MITK
thomass added a comment to T27697: Documentation feedback received from testers .

I would suggest that at least the plugin feedback in the GoogleDocs and the toplevel-> main page /MITKUserManual should be corrected before the Release.

Wed, Sep 2, 8:36 AM · MITK
thomass updated subscribers of T27697: Documentation feedback received from testers .
Wed, Sep 2, 8:34 AM · MITK
thomass updated the task description for T27697: Documentation feedback received from testers .
Wed, Sep 2, 8:33 AM · MITK
thomass triaged T27697: Documentation feedback received from testers as Normal priority.
Wed, Sep 2, 8:33 AM · MITK
thomass added a comment to T26934: Multiple logos in screenshot when using screenshot maker plugin.

@kislinsk: should we further investigate this or have a known issue section in the documentation?

Wed, Sep 2, 8:12 AM · MITK
thomass triaged T27696: Dicom loading does not work for some 4D data with the latest installer as Normal priority.
Wed, Sep 2, 7:47 AM · DICOM, Missing Info, MITK

Tue, Sep 1

thomass added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

The log information in the console which Jonas reported doesn't turn up. So the console doesn't show any new information after the reader is selected.
I will ask about the HDD / IO.

Tue, Sep 1, 6:12 PM · Missing Info, DICOM, MITK
thomass added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I am not sure if that is related but today one of my cooperation partners reported that she couldn't open an 4D image in MITK (Latest develop installer).
On my laptop it just works fine. On her laptop, however, she doesn't even get to the logging point. It doesn't show anything, it just stops doing anything (She closed the workbench after 10 Minutes).

Tue, Sep 1, 5:56 PM · Missing Info, DICOM, MITK
thomass added a revision to T27691: [MITKDoc] Documentation links reference "The Phenotyping" subpages: Unknown Object (Differential Revision).
Tue, Sep 1, 4:29 PM · MITK (2020)
thomass claimed T27691: [MITKDoc] Documentation links reference "The Phenotyping" subpages.
Tue, Sep 1, 4:21 PM · MITK (2020)
thomass committed rMITK288df1f125b1: T27106 Rework Volumevisualization Documentation (authored by thomass).
T27106 Rework Volumevisualization Documentation
Tue, Sep 1, 4:06 PM
thomass closed T27106: [MITKDoc] Revise Volume Visualization Plugin Documentation as Resolved by committing rMITK288df1f125b1: T27106 Rework Volumevisualization Documentation.
Tue, Sep 1, 4:05 PM · Cleared, MITK (2020)
thomass committed rMITK572613b0ccca: T27672 Enable Measurement selection with autoselection (authored by thomass).
T27672 Enable Measurement selection with autoselection
Tue, Sep 1, 12:50 PM
thomass closed T27672: [Measurement] Planar figures are disabled when the image is already loaded as Resolved by committing rMITK572613b0ccca: T27672 Enable Measurement selection with autoselection.
Tue, Sep 1, 12:50 PM · MITK (2020)

Mon, Aug 31

thomass added a comment to T27094: [MITKDoc] Revise Segmentation Utilities Plugin Documentation.
  1. To my knowledge it should generate a mask out of a Surface and in MITKData there should be some...I will have a look
  2. That is rather a bug, because in Phenotyping there is a reference that shouldn't be there, maybe we can remove that.
Mon, Aug 31, 2:16 PM · Cleared, MITK (2020)
thomass triaged T27689: RTDose image can not be serialized and workbench crashes upon loading as High priority.
Mon, Aug 31, 11:19 AM · Request for Discussion, MITK

Fri, Aug 28

thomass added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

Region growing task can be found here T27684

Fri, Aug 28, 12:05 PM · Missing Info, Restricted Project, MITK (2020)
thomass added a revision to T27672: [Measurement] Planar figures are disabled when the image is already loaded: Unknown Object (Differential Revision).
Fri, Aug 28, 11:55 AM · MITK (2020)
thomass added a revision to T27106: [MITKDoc] Revise Volume Visualization Plugin Documentation: Unknown Object (Differential Revision).
Fri, Aug 28, 11:29 AM · Cleared, MITK (2020)

Thu, Aug 27

thomass claimed T27095: [MITKDoc] Revise MultiLabel Segmentation Plugin Documentation.
Thu, Aug 27, 11:23 AM · MITK (2020)
thomass claimed T27099: [MITKDoc] Revise Clipping Plane Plugin Documentation.
Thu, Aug 27, 11:20 AM · Cleared, MITK (2020)
thomass triaged T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction as High priority.
Thu, Aug 27, 8:28 AM · MITK (2020)

Aug 21 2020

thomass added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

Crash fixed by D380 :)

Aug 21 2020, 2:17 PM · MITK (2020), Bugzilla

Aug 14 2020

thomass committed rMITK92d4566b0ea0: T27105 correct renaming of measurement documentation image (authored by thomass).
T27105 correct renaming of measurement documentation image
Aug 14 2020, 3:46 PM
thomass added a comment to T27672: [Measurement] Planar figures are disabled when the image is already loaded.

Proposed a fix in D388, maybe there is a more elegant way but it works now

Aug 14 2020, 2:04 PM · MITK (2020)
thomass updated subscribers of T27672: [Measurement] Planar figures are disabled when the image is already loaded.

@kalali this looks like a bug introduced by the selection concept?

Aug 14 2020, 1:16 PM · MITK (2020)
thomass triaged T27672: [Measurement] Planar figures are disabled when the image is already loaded as High priority.
Aug 14 2020, 1:16 PM · MITK (2020)

Aug 13 2020

thomass committed rMITKdfa0c14e9cfe: rework documentation, replace images and add autoselect (authored by thomass).
rework documentation, replace images and add autoselect
Aug 13 2020, 2:23 PM
thomass closed T27105: [MITKDoc] Revise Measurement Plugin Documentation as Resolved by committing rMITKdfa0c14e9cfe: rework documentation, replace images and add autoselect.
Aug 13 2020, 2:23 PM · Cleared, MITK (2020)

Aug 10 2020

thomass committed rMITK18ddd2ed4fc8: rewrote some sections and enabled auto select (authored by thomass).
rewrote some sections and enabled auto select
Aug 10 2020, 10:06 AM
thomass closed T27098: [MITKDoc] Revise Image Cropper Plugin Documentation as Resolved by committing rMITK18ddd2ed4fc8: rewrote some sections and enabled auto select.
Aug 10 2020, 10:06 AM · Cleared, MITK (2020)

Aug 7 2020

thomass added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

Oh I didn’t look into the Differential yet, only tried it with the current develop. The crash I observed in with FastMarching3D

Aug 7 2020, 8:49 PM · MITK (2020), Bugzilla
thomass added a comment to T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps.

So I have a fix for the contour problem but what is missing is that the pointset is still drawn on timestep 0 instead of the current timestep and I have to figure out why.

Aug 7 2020, 2:46 PM · Missing Info, MITK (2020)
thomass committed rMITK36d69b77aeaf: rewrote some sections and added new image (authored by thomass).
rewrote some sections and added new image
Aug 7 2020, 2:31 PM
thomass closed T27107: [MITKDoc] Revise Screenshot Maker Plugin Documentation as Resolved by committing rMITK36d69b77aeaf: rewrote some sections and added new image.
Aug 7 2020, 2:31 PM · Cleared, MITK (2020)
thomass added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

I also experience a crash in the tool:

Aug 7 2020, 1:12 PM · MITK (2020), Bugzilla
thomass updated subscribers of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.
Aug 7 2020, 8:46 AM · Missing Info, Restricted Project, MITK (2020)
thomass added a comment to T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps.

File is FastMarchingTool.cpp

Aug 7 2020, 8:42 AM · Missing Info, MITK (2020)
thomass added a comment to T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps.

I can partly confirm it.

Aug 7 2020, 8:07 AM · Missing Info, MITK (2020)

Aug 6 2020

thomass added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

2D Segmentation tools:

Aug 6 2020, 3:45 PM · Missing Info, Restricted Project, MITK (2020)

Aug 4 2020

thomass triaged T27646: [Data manager] Option to change color of segmentation disappeared in data manager as Normal priority.
Aug 4 2020, 2:31 PM · Request for Discussion, MITK

Aug 3 2020

thomass added a comment to T27641: [Segmentation] Watershed does always generate a 3D static seg. Even if dynamic segmentation was generated..

Test image: 3D+t Heart

Aug 3 2020, 9:49 AM · Cleared, MITK (2020)
thomass closed T27642: [Segmentation] Watershed segmentation always creates a second segmentation which is 3D even if the image is 4D and dynamic as Invalid.

duplicate to T27641

Aug 3 2020, 9:49 AM · MITK (2020)
thomass triaged T27642: [Segmentation] Watershed segmentation always creates a second segmentation which is 3D even if the image is 4D and dynamic as High priority.
Aug 3 2020, 9:47 AM · MITK (2020)
thomass added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

You totally right and the reason why I oversaw this is when I double checked:

Aug 3 2020, 9:43 AM · Missing Info, Restricted Project, MITK (2020)

Aug 2 2020

thomass closed T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation as Resolved.

All issues have been adressed in respective subtasks.

Aug 2 2020, 5:26 PM · Missing Info, Restricted Project, MITK (2020)
thomass closed T26840: Mission Homepage Reorganization as Resolved.
Aug 2 2020, 4:05 PM · MITK

Jul 31 2020

thomass added a revision to T27107: [MITKDoc] Revise Screenshot Maker Plugin Documentation: Unknown Object (Differential Revision).
Jul 31 2020, 5:21 PM · Cleared, MITK (2020)
thomass committed rMITK582aadc6da8d: Update text and pngs of the point set interaction documentation (authored by thomass).
Update text and pngs of the point set interaction documentation
Jul 31 2020, 11:30 AM
thomass closed T27103: [MITKDoc] Revise Point Set Interaction Plugin Documentation as Resolved by committing rMITK582aadc6da8d: Update text and pngs of the point set interaction documentation.
Jul 31 2020, 11:30 AM · Cleared, MITK (2020)

Jul 30 2020

thomass added a revision to T27098: [MITKDoc] Revise Image Cropper Plugin Documentation: Unknown Object (Differential Revision).
Jul 30 2020, 2:59 PM · Cleared, MITK (2020)
thomass claimed T27107: [MITKDoc] Revise Screenshot Maker Plugin Documentation.
Jul 30 2020, 1:06 PM · Cleared, MITK (2020)
thomass added a revision to T27105: [MITKDoc] Revise Measurement Plugin Documentation: Unknown Object (Differential Revision).
Jul 30 2020, 10:52 AM · Cleared, MITK (2020)
thomass added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

I can reproduce the behavior for the US4DCyl but not for the heart 3D+t. But it looks exactly like the error for static segmentation and t=2 (that I showed during the telco).

Jul 30 2020, 9:34 AM · Missing Info, Restricted Project, MITK (2020)

Jul 29 2020

thomass closed T27615: [Segmentation] Threshold and UL threshold show unwanted behavior on static and dynamic segmentations as Invalid.

duplicate of T27621

Jul 29 2020, 1:03 PM · MITK (2020)
thomass raised the priority of T27616: [Segmentation] Otsu creates static 3D segmentation regardless of segmentation choice from Normal to High.
Jul 29 2020, 1:02 PM · Breaking Change, MITK (2020)
thomass closed T27617: [ImageCropper] Workbench crashes when the plugin is opened as Resolved.

Resolved with D369

Jul 29 2020, 11:55 AM · MITK (2020)
thomass added a comment to T27097: [MITKDoc] Revise Statistics Plugin Documentation.

that was misleading since the statistics view is in the measurement toolkit view (actually it is quite confusing, maybe we can change that in general)

Jul 29 2020, 10:58 AM · Cleared, MITK (2020)
thomass added a revision to T27103: [MITKDoc] Revise Point Set Interaction Plugin Documentation: Unknown Object (Differential Revision).
Jul 29 2020, 10:37 AM · Cleared, MITK (2020)
thomass added a comment to T27617: [ImageCropper] Workbench crashes when the plugin is opened.

Eventually related to changes in D360

Jul 29 2020, 10:02 AM · MITK (2020)
thomass triaged T27617: [ImageCropper] Workbench crashes when the plugin is opened as High priority.
Jul 29 2020, 9:00 AM · MITK (2020)
thomass moved T27608: [MITKDoc] Documentation Refurbish - Developer Manual from Backlog to Documentation on the MITK (2020) board.
Jul 29 2020, 8:09 AM · Cleared, MITK (2020)
thomass moved T27616: [Segmentation] Otsu creates static 3D segmentation regardless of segmentation choice from Backlog to Segmentation on the MITK (2020) board.
Jul 29 2020, 8:09 AM · Breaking Change, MITK (2020)
thomass moved T27615: [Segmentation] Threshold and UL threshold show unwanted behavior on static and dynamic segmentations from Backlog to Segmentation on the MITK (2020) board.
Jul 29 2020, 8:09 AM · MITK (2020)

Jul 28 2020

thomass triaged T27616: [Segmentation] Otsu creates static 3D segmentation regardless of segmentation choice as Normal priority.
Jul 28 2020, 10:21 AM · Breaking Change, MITK (2020)
thomass triaged T27615: [Segmentation] Threshold and UL threshold show unwanted behavior on static and dynamic segmentations as Normal priority.
Jul 28 2020, 10:10 AM · MITK (2020)
thomass claimed T27105: [MITKDoc] Revise Measurement Plugin Documentation.
Jul 28 2020, 8:37 AM · Cleared, MITK (2020)

Jul 27 2020

thomass claimed T27103: [MITKDoc] Revise Point Set Interaction Plugin Documentation.
Jul 27 2020, 5:29 PM · Cleared, MITK (2020)
thomass committed rMITK1511e63fc5ba: Rename documentation manual page names with leading the (authored by thomass).
Rename documentation manual page names with leading the
Jul 27 2020, 3:48 PM
thomass closed T27610: [MITKDoc] Rename Plugin and Module names with leading "The" article as Resolved by committing rMITK1511e63fc5ba: Rename documentation manual page names with leading the.
Jul 27 2020, 3:48 PM · MITK (2020)
thomass committed rMITKdb8bf5c52f67: Rename documentation manual page names with leading the (authored by thomass).
Rename documentation manual page names with leading the
Jul 27 2020, 3:48 PM
thomass added a revision to T27610: [MITKDoc] Rename Plugin and Module names with leading "The" article: Unknown Object (Differential Revision).
Jul 27 2020, 3:29 PM · MITK (2020)
thomass created T27610: [MITKDoc] Rename Plugin and Module names with leading "The" article.
Jul 27 2020, 2:40 PM · MITK (2020)
thomass added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

So I am not quite sure that about the re-init problem but to further clarify my list:

Jul 27 2020, 8:35 AM · Missing Info, Restricted Project, MITK (2020)

Jul 24 2020

thomass added a comment to T27543: [Segmentation] Crash on FastMarching3D tool when loading 4D data .

I would suggest that you land it for now since it solves the bug and I will create another task in which I also take a look into the stepper problem. But both is fine for me :)

Jul 24 2020, 12:42 PM · MITK (2020)

Jul 22 2020

thomass updated the task description for T27105: [MITKDoc] Revise Measurement Plugin Documentation.
Jul 22 2020, 8:45 AM · Cleared, MITK (2020)
thomass updated the task description for T27106: [MITKDoc] Revise Volume Visualization Plugin Documentation.
Jul 22 2020, 8:44 AM · Cleared, MITK (2020)
thomass updated the task description for T27107: [MITKDoc] Revise Screenshot Maker Plugin Documentation.
Jul 22 2020, 8:44 AM · Cleared, MITK (2020)
thomass updated the task description for T27108: [MITKDoc] Revise Remeshing Plugin Documentation.
Jul 22 2020, 8:43 AM · MITK (2020)
thomass updated the task description for T27109: [MITKDoc] Revise Properties Plugin Documentation.
Jul 22 2020, 8:43 AM · Cleared, MITK (2020)
thomass updated the task description for T27110: [MITKDoc] Revise Command Line Tool/ Automatisation Plugin Documentation.
Jul 22 2020, 8:42 AM · Cleared, MITK (2020)
thomass updated the task description for T27111: [MITKDoc] Revise Matchpoint Registration Visualizer Plugin Documentation.
Jul 22 2020, 8:42 AM · Cleared, MITK (2020)
thomass updated the task description for T27112: [MITKDoc] Revise Matchpoint Registration Evaluator Plugin Documentation.
Jul 22 2020, 8:41 AM · Cleared, MITK (2020)
thomass updated the task description for T27113: [MITKDoc] Revise Matchpoint Registration Manipulator Plugin Documentation.
Jul 22 2020, 8:41 AM · Cleared, MITK (2020)