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thomass (Sarina Thomas)
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Projects (10)

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User Since
Aug 1 2016, 12:10 PM (115 w, 4 d)

Recent Activity

Jul 20 2018

thomass added a comment to T24893: Image Cropper handles missing in 2D (non-axes-aligned image).

We added some code to identify two cases:

  1. Non-aligned image geometry
  2. View and image are not aligned after cross hair rotation
Jul 20 2018, 11:59 AM · Restricted Project, MITK

Jun 25 2018

thomass added a comment to T24893: Image Cropper handles missing in 2D (non-axes-aligned image).

I see your point, however right now we can't come up with a clean solution so that 2D handles make sense if the axes are not aligned.
One possible solution could be to enforce a reinit like it is currently done in the segmentation plugin.

Jun 25 2018, 6:40 PM · Restricted Project, MITK

Jun 22 2018

thomass added a comment to T24893: Image Cropper handles missing in 2D (non-axes-aligned image).

Non-axis aligned images should give a warning that you need to reinit them first. The problem is that handles for

  • non-axis aligned images
  • images in which you rotate the crosshair
Jun 22 2018, 10:04 AM · Restricted Project, MITK

Jun 12 2018

thomass added a comment to T24885: Coupled crosshair rotation out-of-view bug.

Seems to be very odd, since the coronal view is not at the crosshair position anymore but somewhere completely different.
@kislinsk is this somehow related to the image slicer issues?

Jun 12 2018, 3:00 PM · MITK
thomass renamed T24885: Coupled crosshair rotation out-of-view bug from Coupled crosshair rotation outt-of-view bug to Coupled crosshair rotation out-of-view bug.
Jun 12 2018, 2:56 PM · MITK
thomass updated subscribers of T24885: Coupled crosshair rotation out-of-view bug.
Jun 12 2018, 2:50 PM · MITK
thomass added a comment to T24893: Image Cropper handles missing in 2D (non-axes-aligned image).

It seems that it is somehow dependent on the data whether the handles work or not.
Just today I run into the same problem so you were a bit faster ;) I will have a look.

Jun 12 2018, 2:48 PM · Restricted Project, MITK
thomass claimed T24893: Image Cropper handles missing in 2D (non-axes-aligned image).
Jun 12 2018, 2:43 PM · Restricted Project, MITK

Feb 2 2018

thomass added a comment to T24172: In CreateSmoothedPolygon interpolation sometimes leads to inaccurate results.

Switching off interpolation leads to more accurate results but on the contrary produces some weird artefacts which cannot be quite explained yet.

Feb 2 2018, 3:01 PM · MITK
thomass committed rMITK3f16d150c12e: Added entry in preferences for switching interpolation mode (authored by thomass).
Added entry in preferences for switching interpolation mode
Feb 2 2018, 2:57 PM
thomass added a comment to T24172: In CreateSmoothedPolygon interpolation sometimes leads to inaccurate results.

Pushed new branch T24172-InterpolationForSmoothedPolygonModel.

Feb 2 2018, 2:57 PM · MITK
thomass created T24172: In CreateSmoothedPolygon interpolation sometimes leads to inaccurate results.
Feb 2 2018, 2:42 PM · MITK

Jan 11 2018

thomass awarded T24041: VolumeMapperVtkSmart3D illegaly changes spacing of every mitk::Image's vtkImageData to (1, 1, 1) a Party Time token.
Jan 11 2018, 11:25 AM · MITK

Oct 13 2017

thomass created T23551: MITK does not support Dicom Subgroup Tags.
Oct 13 2017, 4:06 PM · MITK

Aug 4 2017

thomass updated the task description for T23175: Polygon Creation does not cover LabelSet images.
Aug 4 2017, 3:28 PM · MITK
thomass created T23179: Cleanup polygon model creation .
Aug 4 2017, 3:26 PM · MITK
thomass created T23175: Polygon Creation does not cover LabelSet images.
Aug 4 2017, 3:14 PM · MITK
thomass added a comment to T23078: MITK Workbench crashes trying to create smoothed polygon .

Creating smoothed polygons now works for segmentation and multilabel without causing any crashes. However, no multilabel support is provided yet. The next step will be to cover multilabel support in QmitkCreatePolygonModelAction or rethink the structure as such (i.e. why we can't create a surface without segmentation or why the action is triggered randomly).
Furthermore, we removed ShowSegmentationAsSmoothedSurface from both, segmentation and multilabel. We have to further investigate why the class was created in first place and if there is any advantage of the ITK implementation used in this class as opposed to the VTK driven implementation in mitkManualSegmentationToSurfaceFilter.

Aug 4 2017, 2:51 PM · Restricted Project, MITK
thomass committed rMITK5d34c137d546: Added a smoothing hint checkbox on multilabel preference page (authored by thomass).
Added a smoothing hint checkbox on multilabel preference page
Aug 4 2017, 2:41 PM
thomass committed rMITKe5eb8e11b499: Removed class mitkShowSegmentationAsSmoothedSurface from both files and… (authored by thomass).
Removed class mitkShowSegmentationAsSmoothedSurface from both files and…
Aug 4 2017, 2:39 PM
thomass added a project to T23078: MITK Workbench crashes trying to create smoothed polygon : Restricted Project.
Aug 4 2017, 10:40 AM · Restricted Project, MITK
thomass claimed T23135: PointSets doesn't work in 4-D.
Aug 4 2017, 10:37 AM · Restricted Project, MITK
thomass added a project to T23135: PointSets doesn't work in 4-D: Restricted Project.
Aug 4 2017, 10:36 AM · Restricted Project, MITK
thomass committed rMITKe65211daf7c3: Changed action so that it always uses ShowSegmentationAsSurface independent of… (authored by thomass).
Changed action so that it always uses ShowSegmentationAsSurface independent of…
Aug 4 2017, 10:03 AM
thomass added a comment to T23078: MITK Workbench crashes trying to create smoothed polygon .

Pushed new branch T23078-FixCrashOfOnCreatingSmoothedPolygonSurface.

Aug 4 2017, 10:02 AM · Restricted Project, MITK
thomass claimed T23078: MITK Workbench crashes trying to create smoothed polygon .
Aug 4 2017, 9:57 AM · Restricted Project, MITK

Jul 21 2017

thomass added a comment to T23078: MITK Workbench crashes trying to create smoothed polygon .

On some Windows systems it only crashes if plugin multilabel is switched on & open or no plugin is open.
If plugin segmentation is open it works fine. On Linux it even happens if the segmentation plugin is open.

Jul 21 2017, 1:54 PM · Restricted Project, MITK

Jun 9 2017

thomass added a comment to T22935: Compile Error in MBI superbuild due to itk upgrade.

Pushed new branch T22935-MinorFixesOfCompileErrorsCausedByITKUpgrade.

Jun 9 2017, 10:15 AM · MITK-MBI
thomass created T22935: Compile Error in MBI superbuild due to itk upgrade.
Jun 9 2017, 10:05 AM · MITK-MBI

Mar 24 2017

thomass committed rMITKcd8b8bb82298: Fixes in mirror, preregistration and scripting function (authored by thomass).
Fixes in mirror, preregistration and scripting function
Mar 24 2017, 6:14 PM
thomass committed rMITKe3e1441bd2a8: Create shape preprocessing plugin with a collection of utility functions (authored by thomass).
Create shape preprocessing plugin with a collection of utility functions
Mar 24 2017, 4:59 PM

Mar 21 2017

thomass committed rMITK4be33b012b66: Added functionality to assign positionnodes from a .mitk file to an images (authored by thomass).
Added functionality to assign positionnodes from a .mitk file to an images
Mar 21 2017, 12:45 PM

Mar 20 2017

thomass committed rMITKae805507dd9b: Created simple plugin for manual standard plane adjustment (authored by thomass).
Created simple plugin for manual standard plane adjustment
Mar 20 2017, 10:57 AM

Mar 17 2017

thomass committed rMITK5e1f16e188e3: Use duplicate of the segmentation image to determine the smoothing criterion. (authored by thomass).
Use duplicate of the segmentation image to determine the smoothing criterion.
Mar 17 2017, 1:54 PM
thomass added a comment to T22620: Region growing doesn't work within high intensity regions.

Pushed new branch T22620-RegionGrowerInHighIntensityRegions.

Mar 17 2017, 1:53 PM · MITK
thomass added a comment to T22620: Region growing doesn't work within high intensity regions.

Use a duplicate of the segmentation image to determine the smoothing criterion. Otherwise, the initial seedpoint can be erased in the smoothing operation.

Mar 17 2017, 1:52 PM · MITK
thomass created T22620: Region growing doesn't work within high intensity regions.
Mar 17 2017, 1:43 PM · MITK

Jan 30 2017

thomass closed T22421: ImageCropper crops the wrong timestep in 4D as Resolved.
Jan 30 2017, 1:10 PM · MITK (2016-11)

Jan 24 2017

thomass committed rMITKb9681d9c31e4: Merge branch 'T22421-ImageCropperCropsWrongTimeStep' fixes cropping for… (authored by thomass).
Merge branch 'T22421-ImageCropperCropsWrongTimeStep' fixes cropping for…
Jan 24 2017, 11:48 AM
thomass committed rMITK434553f9eacc: fixes time step handling and adds a timestep name tag to cropped 4D node (authored by thomass).
fixes time step handling and adds a timestep name tag to cropped 4D node
Jan 24 2017, 11:43 AM
thomass added a comment to T22421: ImageCropper crops the wrong timestep in 4D.

Pushed new branch T22421-ImageCropperCropsWrongTimeStep.

Jan 24 2017, 11:43 AM · MITK (2016-11)
thomass created T22421: ImageCropper crops the wrong timestep in 4D.
Jan 24 2017, 11:34 AM · MITK (2016-11)

Jan 23 2017

thomass merged T22418: Color of cropped result in ImageCropper is red in default into T22396: RenderWindow of the ImageCropper does not update during scrolling event.
Jan 23 2017, 5:51 PM · MITK (2016-11)
thomass merged task T22418: Color of cropped result in ImageCropper is red in default into T22396: RenderWindow of the ImageCropper does not update during scrolling event.
Jan 23 2017, 5:51 PM
thomass closed T22396: RenderWindow of the ImageCropper does not update during scrolling event as Resolved.
Jan 23 2017, 5:45 PM · MITK (2016-11)
thomass committed rMITK3d421c05ef3c: Merge branch 'T22396-ImageCropperRenderUpdateScrolling' minor bug fixes… (authored by thomass).
Merge branch 'T22396-ImageCropperRenderUpdateScrolling' minor bug fixes…
Jan 23 2017, 5:44 PM
thomass committed rMITK45c7dde5c880: minor fixes concerning appearance and IO (authored by thomass).
minor fixes concerning appearance and IO
Jan 23 2017, 5:22 PM

Jan 20 2017

thomass created T22418: Color of cropped result in ImageCropper is red in default.
Jan 20 2017, 4:17 PM
thomass moved T22396: RenderWindow of the ImageCropper does not update during scrolling event from Backlog to Suggested on the MITK (2016-11) board.
Jan 20 2017, 2:58 PM · MITK (2016-11)
thomass committed rMITKf529abcc81dc: Invoke render update during scroll event to secure right bounding box render… (authored by thomass).
Invoke render update during scroll event to secure right bounding box render…
Jan 20 2017, 11:57 AM
thomass added a comment to T22396: RenderWindow of the ImageCropper does not update during scrolling event.

Pushed new branch T22396-ImageCropperRenderUpdateScrolling.

Jan 20 2017, 11:57 AM · MITK (2016-11)
thomass created T22396: RenderWindow of the ImageCropper does not update during scrolling event.
Jan 20 2017, 11:35 AM · MITK (2016-11)

Dec 8 2016

thomass updated subscribers of T22254: Render windows show *not* the corresponding orientation after reinit with permuted axes.

I guess @hettich is the expert when talking about the whole orientation issue. After determining correct axes definitions (which seems to be the hardest part), the visualization should be fairly easy using @kolbch's new concept.

Dec 8 2016, 1:01 PM · Pull Request, MITK (2016-11)

Dec 5 2016

thomass committed rMITKc8a594237f3a: Merge branch 'T22247-ImageCropperHandleColorDisappeared remove unused function… (authored by thomass).
Merge branch 'T22247-ImageCropperHandleColorDisappeared remove unused function…
Dec 5 2016, 5:03 PM
thomass committed rMITKbfcf1f076760: removed unused function parameter (authored by thomass).
removed unused function parameter
Dec 5 2016, 5:00 PM
thomass closed T22247: ImageCropper does not show handle colors in 3D window as Resolved.
Dec 5 2016, 2:00 PM · MITK (2016-11)
thomass committed rMITK7f81f85fa92e: Merge branch 'T22247-ImageCropperHandleColorDisappeared' removed SuperClass… (authored by thomass).
Merge branch 'T22247-ImageCropperHandleColorDisappeared' removed SuperClass…
Dec 5 2016, 1:58 PM
thomass committed rMITKd153c7811612: changed ui. file for a slim plugin view (authored by thomass).
changed ui. file for a slim plugin view
Dec 5 2016, 1:41 PM
thomass edited projects for T22247: ImageCropper does not show handle colors in 3D window, added: MITK (2016-11); removed MITK.
Dec 5 2016, 12:13 PM · MITK (2016-11)
thomass committed rMITKd3280a2e8e4d: removed Superclass call to visualize colored handles (authored by thomass).
removed Superclass call to visualize colored handles
Dec 5 2016, 12:12 PM
thomass added a comment to T22247: ImageCropper does not show handle colors in 3D window.

Pushed new branch T22247-ImageCropperHandleColorDisappeared.

Dec 5 2016, 12:12 PM · MITK (2016-11)
thomass created T22247: ImageCropper does not show handle colors in 3D window.
Dec 5 2016, 12:06 PM · MITK (2016-11)

Nov 20 2016

thomass closed T22123: Documentation for MatchPoint and ImageCropper shown at wrong content level as Resolved.
Nov 20 2016, 2:31 PM · MITK (2016-11)
thomass committed rMITKcd662207a3d4: Merge branch 'T22123-Add-correct-documentation-level' added correct… (authored by thomass).
Merge branch 'T22123-Add-correct-documentation-level' added correct…
Nov 20 2016, 2:09 PM

Nov 17 2016

thomass committed rMITK7f9104f03c09: Added missing lines to MITKPluginManuals to correct content level of plugins (authored by thomass).
Added missing lines to MITKPluginManuals to correct content level of plugins
Nov 17 2016, 9:18 AM
thomass added a comment to T22123: Documentation for MatchPoint and ImageCropper shown at wrong content level.

Pushed new branch T22123-Add-correct-documentation-level.

Nov 17 2016, 9:18 AM · MITK (2016-11)
thomass renamed T22123: Documentation for MatchPoint and ImageCropper shown at wrong content level from documentation for image cropper and match point shown at the wrong level to Documentation for MatchPoint and ImageCropper shown at wrong content level.
Nov 17 2016, 9:07 AM · MITK (2016-11)
thomass created T22123: Documentation for MatchPoint and ImageCropper shown at wrong content level.
Nov 17 2016, 9:04 AM · MITK (2016-11)

Oct 17 2016

thomass renamed T20110: Contour broken for 3D and 2D interpolation in multilabel segmentation plugin from Contour broken for 3D and 2D interpolation in classic/multilable segmentation plugin to Contour broken for 3D and 2D interpolation in classic/multilabel segmentation plugin .
Oct 17 2016, 4:22 PM · MITK
thomass created T20110: Contour broken for 3D and 2D interpolation in multilabel segmentation plugin .
Oct 17 2016, 4:21 PM · MITK

Sep 29 2016

thomass committed rMITK5be0bd188062: Merge branch 'T19984-ImageCropperIntegration' into T19984… (authored by thomass).
Merge branch 'T19984-ImageCropperIntegration' into T19984…
Sep 29 2016, 2:12 PM
thomass added a comment to T19984: New ImageCropper Plugin Integration.

Pushed new branch T19984-ImageCropperIntegrationBranch.

Sep 29 2016, 2:12 PM · MITK
thomass committed rMITKca223c1f0db8: Minor documentation changes (authored by thomass).
Minor documentation changes
Sep 29 2016, 1:56 PM
thomass created T20030: IntProperty error message on loading a multilabel image.
Sep 29 2016, 12:00 PM · MITK

Sep 23 2016

thomass committed rMITKf8eff9bf14b1: Add new image cropper plugin to branch (authored by thomass).
Add new image cropper plugin to branch
Sep 23 2016, 1:20 PM
thomass added a comment to T19984: New ImageCropper Plugin Integration.

Pushed new branch T19984-ImageCropperIntegration.

Sep 23 2016, 1:20 PM · MITK

Sep 16 2016

thomass created T19984: New ImageCropper Plugin Integration.
Sep 16 2016, 9:41 AM · MITK

Aug 2 2016

thomass added a comment to F1293: Bug_Correction_Tool.PNG.

Correction Tool crash

Aug 2 2016, 10:23 AM
thomass added projects to T19535: Correction tool crashes: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · MITK (2016-03), Bugzilla
thomass added projects to T19534: Live Wire usability issues: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
thomass added a comment to F1291: Bug_Fill_ZeroIndex.PNG.

Segmentation Result after using Fill

Aug 2 2016, 10:22 AM
thomass added projects to T19529: Fill and erase entire slice ignores zero index: MITK, Bugzilla.
Aug 2 2016, 10:22 AM · Bugzilla, MITK
thomass added projects to T19530: Live Wire control point modification not possible: MITK, Bugzilla.
Aug 2 2016, 10:22 AM · Restricted Project, Bugzilla, MITK
thomass added projects to T19527: 2D region grower is not working: MITK, Bugzilla.
Aug 2 2016, 10:22 AM · Bugzilla, MITK
thomass added a comment to T19462: Missing transition while rotating and zooming planes.

Actual Behaviour
While being in crosshair rotation mode, pressing another second button causes the interactor to remain in that previous state and the cursor icon to freeze.

Aug 2 2016, 10:22 AM · MITK, Bugzilla