Maniphest T30215

[SEG] Support TotalSegmentatorV2
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	a178n
	Oct 4 2023, 8:24 AM

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Description

Totalsegmentator v2 was released recently in pypi as well.
Pypi: https://pypi.org/project/TotalSegmentator/
Github: https://github.com/wasserth/TotalSegmentator

MITK should be tested against and adjusted to the new version.
Since MITK handles the installation, v2 installation should be also verified across all platforms.

Revisions and Commits

rMITK MITK
	Restricted Differential Revision	rMITK5cca58172e5d TotalSegmentator v2 compatibility changes
	Restricted Differential Revision	rMITK586481d0ec30 Totalsegmentator documentation update for v2
	Restricted Differential Revision	rMITK3c75a3fb1b19 Totalsegmentator install packages update for v2
	Restricted Differential Revision	rMITK36f19e73bbfe Totalsegmentator label list parsing update for v2
	Restricted Differential Revision	rMITK8e3186f5f139 Adding progress bar to Totalsegmentator tool
	Restricted Differential Revision	rMITK8de2fd4d9c1a Totalsegmentator minor code update
	Restricted Differential Revision	rMITKdbb118093395 TotalSegmentator v2

Related Objects
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		Status	Assigned	Task
		Open	None	T29191 [SEG] New segmentation tool candidates
		Open	None	T29437 [SEG] Add TotalSegmentator
		Resolved	a178n	T30215 [SEG] Support TotalSegmentatorV2

Event Timeline

a178n triaged this task as Normal priority.Oct 4 2023, 8:24 AM

a178n created this task.

a178n renamed this task from Support TotalSegmentatorV2 to [SEG] Support TotalSegmentatorV2.Oct 4 2023, 2:15 PM

Pushed new branch to rMITK MITK: feature/T30215-totalseg-v2-update.

a178n added a revision: Restricted Differential Revision.Oct 13 2023, 10:05 AM

a178n added a commit: rMITKdbb118093395: TotalSegmentator v2.Oct 19 2023, 5:39 PM

a178n added a commit: rMITK8de2fd4d9c1a: Totalsegmentator minor code update.

a178n added a commit: rMITK8e3186f5f139: Adding progress bar to Totalsegmentator tool.

a178n added a commit: rMITK36f19e73bbfe: Totalsegmentator label list parsing update for v2.

a178n added a commit: rMITK586481d0ec30: Totalsegmentator documentation update for v2.

a178n added a commit: rMITK3c75a3fb1b19: Totalsegmentator install packages update for v2.

a178n added a commit: rMITK5cca58172e5d: TotalSegmentator v2 compatibility changes.

kislinsk mentioned this in T30248: 2023 Week 46 (Mid November).Nov 13 2023, 4:23 PM

kislinsk edited projects, added MITK (v2024.06); removed MITK (v2023.12).Dec 5 2023, 10:38 AM

a178n closed this task as Resolved.Dec 19 2023, 10:36 AM

Deleted branch from rMITK MITK: feature/T30215-totalseg-v2-update.