[SEG] New segmentation tool candidates
Open, NormalPublic
Actions

Assigned To

None

Authored By

	floca
	Jun 1 2022, 5:03 PM

Description

this is a meta task to collect any new potential additions to the segmentation tools.

Subtasks of this task are a collection of possibilities. It is not implied that all will have to be implemented. We will assess (technical proof of concept, uses survey) them later on to see if an addition is worth it.

Related Objects
Search...

Status	Assigned	Task
Open	None	T29191 [SEG] New segmentation tool candidates
Resolved	floca	T28464 [Segmentation] New Add/Remove tool
Open	kahl	T28406 [Segmentation] Examine Live-wire tool for different costfunctions/behavior
Resolved	j762e	T28851 [SEG] Add ITK GrowCut as segmentation tool
Open	None	T29192 [SEG] MONAI Label support in MITK Workbench
Open	a178n	T29295 MONAI Label App as auto-segmentation tool in MITK
Open	None	T29451 [SEG] Response labels all not displayed on Workbench
Open	floca	T29500 [SEG] SegWithPreview tools with multiple labels are broken (if the produce a 0 label)
Open	None	T29452 Setting arbitrary label names to a LabelSetImage can be more straightforward
Open	None	T29455 Avoid image R/W to disk for MonaiLabel REST transactions
Open	None	T29456 Datastore access facility in MONAILabel tool
Open	a178n	T29379 MONAI Label REST Response JSON issues, allegedly
Open	None	T29193 [SEG] Add a superpixel tool
Open	floca	T28499 Refactor/rewrite RegionGrowing3D tool
Open	floca	T28275 [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep
Wontfix	None	T27872 [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox
Open	None	T27684 [Segmentation] Improve Region Growing 2D algorithm and interaction
Resolved	kislinsk	T27437 Migrate MITK to use ITK 5.x
Open	None	T26413 Nifti2 support
Duplicate	None	T26456 Update ITK to v5
Resolved	floca	T28446 Migrate MatchPoint to ITK v5.1
Resolved	a178n	T28523 Evaluate MITK segmentation survey
Open	None	T29309 [GrowCut] Further remarks regarding GrowCut
Open	None	T29310 [ITK] Check if ITK 5.3 adds the GrowCut remote module by default
Resolved	floca	T29311 Further observation of the GrowCut segmentation tool on 4D images
Resolved	s434n	T29312 Add support for using layers other than layer 0 of the current LabelSetImage
Open	None	T29313 Add a Test to check if the GrowCut algorithm produces a different output
Open	a178n	T29437 [SEG] Add TotalSegmentator
Open	a178n	T29457 Introduce basic TotalSegmentator tool in Workbench
Open	a178n	T29458 Include Advanced settings support for TotalSegmentator tool in MITK
Open	None	T29465 How to display available statistics of segmentation
Open	None	T29459 Docker support for TotalSegmentator
Resolved	None	T29461 TotalSegmentator output label names conundrum
Open	None	T29462 TotalSegmentator (Python) issues
Open	a178n	T29463 Doxygen documentation for TotalSegmentator
Open	a178n	T29464 Test plan for TotalSegmentator
Open	a178n	T29468 Let MITK handle TotalSegmentator setup
Open	None	T29485 TotalSegmentator User Testing
Open	None	T29487 Tool Icon for TotalSegmentator
Open	None	T29497 Full support for all subtasks