Since v 2.2 Totalsegmentator has introduced support for MR images. The new feature is added a new task and command line invocation look like:
TotalSegmentator -i mri.nii.gz -o segmentations --task total_mr
We need to update MITK Totalsegmentator tool for total_mr task support.
| Status | Assigned | Task | ||
|---|---|---|---|---|
| Open | None | T29191 [SEG] New segmentation tool candidates | ||
| Resolved | floca | T29437 [SEG] Add TotalSegmentator | ||
| Resolved | a178n | T30457 Add TotalSegmentator MR image (v 2.2) support in MITK |
The new MR task feature is not just straightfwd pip version update change in MITK for installation.
The total_mr brings new 56 label name set.
There would be code updates to parse & apply it in mitkTotalSegmentator.cpp.