Hi Nil. No update yet. @r948e , do you think you could look into this?
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Oct 6 2022
Oct 6 2022
neher closed T29321: Diffusion dicom reader not checling for vendor "Siemens Healthineers" as Resolved.
Oct 5 2022
Oct 5 2022
neher triaged T29321: Diffusion dicom reader not checling for vendor "Siemens Healthineers" as Normal priority.
Oct 4 2022
Oct 4 2022
neher renamed T29319: DCMTK undefined reference from DCMTK linker error to DCMTK undefined reference.
Aug 2 2022
Aug 2 2022
neher edited projects for T28849: Remove fiber parts only removes parts if point inside mask, added: MITK Diffusion; removed MITK.
Jun 11 2022
Jun 11 2022
Jun 10 2022
Jun 10 2022
Hi Peter,
Apr 1 2022
Apr 1 2022
Jan 26 2022
Jan 26 2022
Pushed new branch T28947-TractRad.
Jan 7 2022
Jan 7 2022
A new PhD student who is starting in February will work on MITK Diffusion again. He will also look into this.
Jan 4 2022
Jan 4 2022
Yes, I compared both versions of our application; based on MITK 2018.04 and 2021.02. I understand that's it's not a perfect comparison, as there are several other changes between those versions, but it's the best I can do right now.
Hi Nil. Thank you for testing! Did you directly compare the dataset performance with the old shader version? Just to make sure it's actually an issue with the clipping planes.
Hi Peter, thank you for the quick fix. I finally took the time to test... 2 months later :)
Dec 15 2021
Dec 15 2021
Dec 3 2021
Dec 3 2021
Pushed new branch T28901-DistanceToSurface.
Dec 1 2021
Dec 1 2021
Pushed new branch T28890-StreamlineProbs.
Nov 26 2021
Nov 26 2021
Nov 25 2021
Nov 25 2021
Pushed new branch T28875-OdfNormalization.
Nov 22 2021
Nov 22 2021
neher added a comment to T28872: Diffusion registration crashes when two non-diffusion-weighted images are registered.
Pushed new branch T28872-Registration.
neher triaged T28872: Diffusion registration crashes when two non-diffusion-weighted images are registered as Normal priority.
Nov 19 2021
Nov 19 2021
Pushed new branch T28867-FiberfoxTest.
Nov 18 2021
Nov 18 2021
I think there is a bug in the itk filter. itkPatchBasedDenoisingImageFilter normalizes the patch weights to center weigh=1, i.e. the other weights might very well become > 1. In a next step it is asserted that the weights are <=1, leading to a crash (PatchBasedDenoisingBaseImageFilter<TInputImage, TOutputImage>
::SetPatchWeights).
Pushed new branch T28863-DiffPropSerializerTest.
can't reproduce
Nov 17 2021
Nov 17 2021
Pushed new branch T28859-ConnectomicsReader.
Pushed new branch T28858-FiberFitTest.
neher added a comment to T28857: Create cmd app to calculate distances from fiber bundles to segmentations.
Pushed new branch T28857-FiberSegDistance.
neher triaged T28857: Create cmd app to calculate distances from fiber bundles to segmentations as High priority.
Nov 3 2021
Nov 3 2021
neher edited projects for T28831: dMRI nonlocal means denoising crashes, added: MITK Diffusion; removed MITK.
Oct 29 2021
Oct 29 2021
Pushed new branch T28772-ShaderIssues.
Oct 27 2021
Oct 27 2021
I tried to create an artificial fiberbundle using Fiberfox. The result looks fine in 2D and 3D.
Original description of the issue by Nil Goyette:
Pushed new branch T28017-FinalizeCompatibilityWithMitk.
Jan 18 2021
Jan 18 2021
Pushed new branch T28017-VTK9-CodeIssues2.
Jan 14 2021
Jan 14 2021
Nov 26 2020
Nov 26 2020
Pushed new branch T28017-VTK9-CodeIssues.
Pushed new branch T28017-VTK9.