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cordes (Jonas Cordes)
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Aug 1 2016, 12:10 PM (233 w, 3 d)
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Recent Activity

Sep 29 2016

cordes committed rMD8d4c810ebce8: add test data for FeatureProcessTest (authored by cordes).
add test data for FeatureProcessTest
Sep 29 2016, 8:28 AM

Sep 21 2016

cordes committed rMITKdbaf3ff9ef78: add resources and documentation (authored by cordes).
add resources and documentation
Sep 21 2016, 11:43 AM
cordes committed rMITK5ad64301a27c: create a module for vigra based feature procesing (authored by cordes).
create a module for vigra based feature procesing
Sep 21 2016, 11:43 AM
cordes committed rMITK330a9a39975d: update test and some minor FP changes (authored by cordes).
update test and some minor FP changes
Sep 21 2016, 11:43 AM
cordes committed rMITK040030ae1b8b: integration of FSL based CT brain mask segmentation (authored by cordes).
integration of FSL based CT brain mask segmentation
Sep 21 2016, 11:43 AM
cordes committed rMITK47f84a80f519: remove diffusionIO and Fiberracking depencies (authored by cordes).
remove diffusionIO and Fiberracking depencies
Sep 21 2016, 11:43 AM
cordes committed rMITKf782f0fc81f9: add fsl brain mask collection (part1) (authored by cordes).
add fsl brain mask collection (part1)
Sep 21 2016, 11:43 AM
cordes committed rMITK107fd9d82fe5: Merge branch 'personal/cordes/final-plugin-integration' into T19168… (authored by cordes).
Merge branch 'personal/cordes/final-plugin-integration' into T19168…
Sep 21 2016, 11:43 AM
cordes committed rMITK6662e5053e3a: remove DataCollection dependencies (authored by cordes).
remove DataCollection dependencies
Sep 21 2016, 11:42 AM
cordes committed rMITKb12dde4530c4: updated mini app now uses the feature processor (authored by cordes).
updated mini app now uses the feature processor
Sep 21 2016, 11:42 AM
cordes committed rMITKed690330af01: integrate module changes due to multilabel segmentation support checkout from… (authored by cordes).
integrate module changes due to multilabel segmentation support checkout from…
Sep 21 2016, 11:42 AM
cordes committed rMITKb4ce51548289: add workflow module for intracerebral hermorrhage segmentations (authored by cordes).
add workflow module for intracerebral hermorrhage segmentations
Sep 21 2016, 11:42 AM
cordes committed rMITK977aad8edae0: minor changes regarding session handling and data selection (authored by cordes).
minor changes regarding session handling and data selection
Sep 21 2016, 11:42 AM
cordes committed rMITK2b6b877feec1: integration of the classification segmentation (authored by cordes).
integration of the classification segmentation
Sep 21 2016, 11:42 AM
cordes committed rMITK9fea95c044a6: cleanup feature processes each process now returns a FeatureImageMap object (authored by cordes).
cleanup feature processes each process now returns a FeatureImageMap object
Sep 21 2016, 11:42 AM
cordes committed rMITK11bbb9a6ab39: add FOS FeaturePrcoessService class and register it in the CLCore… (authored by cordes).
add FOS FeaturePrcoessService class and register it in the CLCore…
Sep 21 2016, 11:42 AM
cordes committed rMITKd830e0efd44e: fix CL Eigen/mitkImage transofmations (authored by cordes).
fix CL Eigen/mitkImage transofmations
Sep 21 2016, 11:42 AM
cordes committed rMITKf2dec47e8925: change the AddLabel method interface of the LabelSet class now returning the… (authored by cordes).
change the AddLabel method interface of the LabelSet class now returning the…
Sep 21 2016, 11:42 AM
cordes committed rMITK70b924d2a2ea: update utilities (authored by cordes).
update utilities
Sep 21 2016, 11:42 AM
cordes committed rMITK3c0f4a082470: update documentation (part2) (authored by cordes).
update documentation (part2)
Sep 21 2016, 11:42 AM
cordes committed rMITK741d4ccc57d1: fix comparison error and standard template argument type (authored by cordes).
fix comparison error and standard template argument type
Sep 21 2016, 11:42 AM
cordes committed rMITKe99d06fe5e73: rm obsolet files (authored by cordes).
rm obsolet files
Sep 21 2016, 11:42 AM
cordes committed rMITK6d37eea33d4b: rename CLUtil member method CloneImageType to DuplicateImageType (authored by cordes).
rename CLUtil member method CloneImageType to DuplicateImageType
Sep 21 2016, 11:42 AM
cordes committed rMITK925e4b95d9c0: remove cmake entry (authored by cordes).
remove cmake entry
Sep 21 2016, 11:41 AM
cordes committed rMITK32db4d3f2734: restructure (authored by cordes).
restructure
Sep 21 2016, 11:41 AM
cordes committed rMITK6e445b3f9fcd: update includes, adapt names (authored by cordes).
update includes, adapt names
Sep 21 2016, 11:41 AM
cordes committed rMITK3a3586d5f73a: 2nd update missing template parameter (authored by cordes).
2nd update missing template parameter
Sep 21 2016, 11:41 AM
cordes committed rMITK52bb20df88ad: renameing AbstractFeatureProcess -> FeatureProcessServiceInterface… (authored by cordes).
renameing AbstractFeatureProcess -> FeatureProcessServiceInterface…
Sep 21 2016, 11:41 AM
cordes committed rMITK88e1acbd683b: use correct includes (authored by cordes).
use correct includes
Sep 21 2016, 11:41 AM
cordes committed rMITK21d568eea0d5: update test (authored by cordes).
update test
Sep 21 2016, 11:41 AM
cordes committed rMITK1c2c112be69c: remove clang pragmas (authored by cordes).
remove clang pragmas
Sep 21 2016, 11:41 AM
cordes committed rMITKad3df79aa601: add missing maskimagetype template parameter (authored by cordes).
add missing maskimagetype template parameter
Sep 21 2016, 11:41 AM
cordes committed rMITK0e748dd594bd: Remove feature registry module (authored by cordes).
Remove feature registry module
Sep 21 2016, 11:41 AM
cordes committed rMITK4f38298dcdc4: amend~3 rm FeatureProcessorFloat.cpp (authored by cordes).
amend~3 rm FeatureProcessorFloat.cpp
Sep 21 2016, 11:41 AM
cordes committed rMITKfafd9be54713: add clone mitkImage by casting to new image type (authored by cordes).
add clone mitkImage by casting to new image type
Sep 21 2016, 11:41 AM
cordes committed rMITK0f333c3c1909: rm FP-Registry (authored by cordes).
rm FP-Registry
Sep 21 2016, 11:41 AM
cordes committed rMITKb700805c491c: add featureprocess registry (authored by cordes).
add featureprocess registry
Sep 21 2016, 11:41 AM
cordes committed rMITK2498a6e0c84a: cleanup feature processors and remove obsolete FloatFeatureProcessor (authored by cordes).
cleanup feature processors and remove obsolete FloatFeatureProcessor
Sep 21 2016, 11:40 AM
cordes committed rMITK95c2529b601d: add new module for Featureprocess micro service registration (authored by cordes).
add new module for Featureprocess micro service registration
Sep 21 2016, 11:40 AM
cordes committed rMITK1042eb854080: Create us based feature processing support, add service interfaces prototypes (authored by cordes).
Create us based feature processing support, add service interfaces prototypes
Sep 21 2016, 11:40 AM
cordes committed rMITK38dc2669f6bd: remove deleted-file include (authored by cordes).
remove deleted-file include
Sep 21 2016, 11:40 AM
cordes committed rMITKcd38eb1d0a8c: update abstract feature processors (authored by cordes).
update abstract feature processors
Sep 21 2016, 11:40 AM
cordes committed rMITKea100c9e21b4: check input of FP (authored by cordes).
check input of FP
Sep 21 2016, 11:40 AM
cordes committed rMITKfe9e8f8f4c4d: remove obsolete methods (authored by cordes).
remove obsolete methods
Sep 21 2016, 11:40 AM
cordes committed rMITKd4cddf7e1e3e: make constructure public and clean up classes (authored by cordes).
make constructure public and clean up classes
Sep 21 2016, 11:40 AM
cordes committed rMITK27ebc5ff9128: update FeatureProcessor structure keep it simple (authored by cordes).
update FeatureProcessor structure keep it simple
Sep 21 2016, 11:40 AM
cordes committed rMITKe514fa47c6ca: make FP to BaseData (authored by cordes).
make FP to BaseData
Sep 21 2016, 11:40 AM
cordes committed rMITKd1090d08b8be: update name (authored by cordes).
update name
Sep 21 2016, 11:40 AM
cordes committed rMITK22f4cd08e428: cleanup (authored by cordes).
cleanup
Sep 21 2016, 11:40 AM
cordes committed rMITK0c06b4fb8a3b: update code style (authored by cordes).
update code style
Sep 21 2016, 11:40 AM
cordes committed rMITKda8edbbf5906: add new class FloatFeatureProcessor (authored by cordes).
add new class FloatFeatureProcessor
Sep 21 2016, 11:40 AM
cordes committed rMITK4a05a02a7119: std. param = null for EigenMatrixByMask the whole image is processed (authored by cordes).
std. param = null for EigenMatrixByMask the whole image is processed
Sep 21 2016, 11:40 AM
cordes committed rMITK226d919d60fc: minor changes (authored by cordes).
minor changes
Sep 21 2016, 11:39 AM
cordes committed rMITKca62571a2f0f: documentation, use weak_pointer for provided reference images (authored by cordes).
documentation, use weak_pointer for provided reference images
Sep 21 2016, 11:39 AM
cordes committed rMITK3490fd773b4d: EigenMatrix conversion (authored by cordes).
EigenMatrix conversion
Sep 21 2016, 11:39 AM
cordes committed rMITK36b50c65669e: cleanup interfaces (authored by cordes).
cleanup interfaces
Sep 21 2016, 11:39 AM
cordes committed rMITKa4ecb2864ae3: Merge branch 'T19724-usBasedFeatureProcessing' into T19168… (authored by cordes).
Merge branch 'T19724-usBasedFeatureProcessing' into T19168…
Sep 21 2016, 11:39 AM
cordes committed rMITK6d92df85d724: add feature processor test (authored by cordes).
add feature processor test
Sep 21 2016, 11:39 AM
cordes committed rMITK30ba086fe9b2: add abstract feature processor prototype (authored by cordes).
add abstract feature processor prototype
Sep 21 2016, 11:39 AM
cordes committed rMITK8f54243c65f4: enable testing (authored by cordes).
enable testing
Sep 21 2016, 11:39 AM
cordes added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

Pushed new branch T19168-CleanPluginIntegration.

Sep 21 2016, 11:39 AM · Bugzilla, MITK

Sep 9 2016

cordes committed rMITK317064c97372: fix CL Eigen/mitkImage transofmations (authored by cordes).
fix CL Eigen/mitkImage transofmations
Sep 9 2016, 6:04 PM
cordes committed rMITK73cc86003fda: cleanup feature processes each process now returns a FeatureImageMap object (authored by cordes).
cleanup feature processes each process now returns a FeatureImageMap object
Sep 9 2016, 6:04 PM
cordes committed rMITKd961af8375a2: change the AddLabel method interface of the LabelSet class now returning the… (authored by cordes).
change the AddLabel method interface of the LabelSet class now returning the…
Sep 9 2016, 6:04 PM
cordes committed rMITK3266b0f00033: add FOS FeaturePrcoessService class and register it in the CLCore… (authored by cordes).
add FOS FeaturePrcoessService class and register it in the CLCore…
Sep 9 2016, 6:04 PM
cordes committed rMITK3a31ad52741b: fix comparison error and standard template argument type (authored by cordes).
fix comparison error and standard template argument type
Sep 9 2016, 6:04 PM
cordes committed rMITKf8d574d7b896: rm obsolet files (authored by cordes).
rm obsolet files
Sep 9 2016, 6:04 PM
cordes committed rMITK75d7f0e80932: rename CLUtil member method CloneImageType to DuplicateImageType (authored by cordes).
rename CLUtil member method CloneImageType to DuplicateImageType
Sep 9 2016, 6:04 PM
cordes committed rMITKe7f255d03c9a: update utilities (authored by cordes).
update utilities
Sep 9 2016, 6:04 PM
cordes added a comment to T19724: Feature processor for classification.

Pushed new branch T19724-usBasedFeatureProcessing.

Sep 9 2016, 6:03 PM · Bugzilla, MITK
cordes closed T19679: Mac Installer does not start due to missing qt plugins as Resolved.

Finally all required dependencies were added. Major changes are located in CMake/mitkInstallRules.cmake .

Sep 9 2016, 5:54 PM · MITK (2016-11), Bugzilla
cordes committed rMITKc538f72e4202: Merge branch 'T19679-InstallQtWebEngineProcess' (authored by cordes).
Merge branch 'T19679-InstallQtWebEngineProcess'
Sep 9 2016, 5:46 PM
cordes committed rMITKe66d075072a3: QtWebEngineCore.framework/Helpers containing the required QtWebEngineProcess.app (authored by cordes).
QtWebEngineCore.framework/Helpers containing the required QtWebEngineProcess.app
Sep 9 2016, 12:32 PM
cordes added a comment to T19679: Mac Installer does not start due to missing qt plugins.

Pushed new branch T19679-InstallQtWebEngineProcess.

Sep 9 2016, 12:32 PM · MITK (2016-11), Bugzilla

Aug 13 2016

cordes added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

Fix seems not to work for tutorial steps. It's not based on BasedApplication and direct code injection doesn't work. This needs further investigation.

Aug 13 2016, 10:34 AM · MITK, Bugzilla
cordes added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

The application attribute Qt::AA_EnableHighDpiScaling, introduced in Qt 5.6, enables automatic scaling based on the pixel density of the monitor.

Aug 13 2016, 1:51 AM · MITK, Bugzilla
cordes committed rMITK6f510826626e: add Qt::AA_EnableHighDpiScaling for retina support on osx platform (authored by cordes).
add Qt::AA_EnableHighDpiScaling for retina support on osx platform
Aug 13 2016, 1:32 AM

Aug 11 2016

cordes committed rMITKacf614008a73: remove cmake entry (authored by cordes).
remove cmake entry
Aug 11 2016, 9:18 AM
cordes committed rMITKbd124eca97f6: update documentation (part2) (authored by cordes).
update documentation (part2)
Aug 11 2016, 12:33 AM
cordes committed rMITK197413ce9170: restructure (authored by cordes).
restructure
Aug 11 2016, 12:33 AM

Aug 10 2016

cordes added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

No it didn't help :-( So, do you have any other hints?

Aug 10 2016, 12:59 PM · MITK, Bugzilla
cordes updated subscribers of T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.
Aug 10 2016, 11:26 AM · MITK, Bugzilla
cordes added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

Currently no rendering is possible on osx, using the in the description mentioned build configuration (that is more or less the state of the art).
Some observations:

  1. It occurs on release and debug mode.
  2. If you scale the MITK main window, the rendering works for one frame - then it's rendered again black.
  3. all four render-windows of the multi-widget are affected
Aug 10 2016, 11:25 AM · MITK, Bugzilla

Aug 2 2016

cordes added projects to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · MITK, Bugzilla
cordes added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

conflict occurs also using 10.10.5.

Aug 2 2016, 10:23 AM · MITK, Bugzilla
cordes added a comment to T19720: Remove code wich is deprecated since <=2014_10.

[8b6411]: COMP:Merge branch 'bug-19720-fixTypeComparison'

Merged commits:

2016-05-11 14:54:50 Jonas Cordes [77c9ab]
remove decltype type declarations
itkMatrix col/row indices are unsigned int

Aug 2 2016, 10:23 AM · Bugzilla, MITK
cordes added a comment to T19720: Remove code wich is deprecated since <=2014_10.

std::remove_const isn't working in this context. However, until itkMatrix colum/row index is surely of type unsigned int we should use it directly!

Aug 2 2016, 10:23 AM · Bugzilla, MITK
cordes added projects to T19704: [Warnings as errors] partialvolumeanalysis: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
cordes added projects to T19686: support LinguistTools in MITK: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
cordes added a comment to T19686: support LinguistTools in MITK.

[576986]: Merge branch 'bug-19686-addQtLinguistTools'

Merged commits:

2016-04-20 16:03:20 Jonas Cordes [5e2064]
add LinguistTools to QT_COMPONENTS in CMakeLists.txt

Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
cordes added a comment to T19679: Mac Installer does not start due to missing qt plugins.

Current master (3f608decdef1) following issue occures: Could not find QtWebEngineProcess

Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
cordes added a comment to T19683: "Show only selected node" changes the visibility of crosshair.

No-3D-rendering problem can also be forced via the render-menu "show crosshair" command.

Aug 2 2016, 10:23 AM · Bugzilla, Pull Request, MITK
cordes added a comment to T19679: Mac Installer does not start due to missing qt plugins.

should be fixed in qt 5.6.1 (https://bugreports.qt.io/browse/QTBUG-50155)

Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
cordes added projects to T19683: "Show only selected node" changes the visibility of crosshair: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, Pull Request, MITK
cordes added a comment to T19679: Mac Installer does not start due to missing qt plugins.

[8fa4aa]: Merge branch 'bug-19679-missingCocoaPlugin'

Merged commits:

2016-04-15 12:13:32 Jonas Cordes [925c9f]
install required qt plugins and frameworks for mac
+ platforms/libqcocoa.dylib
+ sqldrivers/libqsqllite.dylib
+ QDbus.framework

Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
cordes added a comment to T19679: Mac Installer does not start due to missing qt plugins.

After we provided the libqcocoa plugin and QtDBus and its qsqllite dependency as follows:

Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
cordes added a comment to T19679: Mac Installer does not start due to missing qt plugins.

missing icons in toolbar. For svg icon support we have to add the qt plugin :iconengines/libqsvgicon.dylib

Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
cordes added a comment to T19679: Mac Installer does not start due to missing qt plugins.

[e612eb]: Merge branch 'bug-19679-SVGIconEngine'

Merged commits:

2016-04-20 13:54:35 Jonas Cordes [9b79a6]
add iconengines/libqsvgicon.dylib

Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
cordes added projects to T19639: suppress reinit during loading of non-image-basedata types: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Auto-closed, MITK, Bugzilla
cordes added a comment to F1310: without_toprightcontrol.png.

without_TRC

Aug 2 2016, 10:23 AM