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Diffusion MITK 07487e3748ce

Merge branch 'T24609-v2018.04-alpha'
07487e3748ce
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Description

Merge branch 'T24609-v2018.04-alpha'

  1. Conflicts:
  2. CMakeExternals/MITKData.cmake
  3. Modules/BasicImageProcessing/src/mitkArithmeticOperation.cpp
  4. Modules/Core/test/mitkImageDataItemTest.cpp

Details

Provenance
kislinskAuthored on Jun 6 2018, 1:43 PM
kislinskPushed on Jun 6 2018, 1:45 PM
Parents
rMITKceb5175f9f67: Merge branch 'T24827-Qt-5.11' into T24609-v2018.04-alpha
rMITK7256448bc99a: Fixed errors in wrong T24196 merge
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PathSizePackages
Applications/
PluginGenerator/
ProjectTemplate/
CMake/
BuildConfigurations/
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CMakeExternals/
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Documentation/
Doxygen/
3-DeveloperManual/
Application/
Modules/
AlgorithmsExt/
BasicImageProcessing/
src/
CameraCalibration/
Classification/
CLMiniApps/
CLUtilities/
src/
GlobalImageFeatures/
Core/
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include/
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src/
DataManagement/
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IO/
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Rendering/
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test/
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CppMicroServices/
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cmake/
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DICOMReader/
src/
DicomRT/
autoload/
IO/
DiffusionImaging/
DiffusionCore/
autoload/
IO/
cmdapps/
DiffusionIO/
FiberTracking/
Algorithms/
Fiberfox/
IODataStructures/
Testing/
cmdapps/
FiberProcessing/
Fiberfox/
Misc/
TractographyEvaluation/
Quantification/
IODataStructures/
TbssImages/
cmdapps/
IGT/
TrackingDevices/
IGTBase/
include/
src/
IGTUI/
Qmitk/
OpenCVVideoSupport/
Commands/
UI/
QtWidgets/
src/
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QtWidgetsExt/
resource/
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SceneSerializationBase/
include/
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src/
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test/
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ToFProcessing/
ToFUI/
Qmitk/
US/
USFilters/
USModel/
USNavigation/
USUI/
Qmitk/
Plugins/
org.blueberry.core.runtime/
src/
internal/
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org.blueberry.ui.qt.help/
resources/
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src/
internal/
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org.blueberry.ui.qt.log/
resources/
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src/
internal/
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org.blueberry.ui.qt.objectinspector/
src/
internal/
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org.blueberry.ui.qt/
resources/
dark/
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src/
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internal/
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org.mitk.gui.qt.application/
src/
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org.mitk.gui.qt.basicimageprocessing/
src/
internal/
org.mitk.gui.qt.cest/
src/
internal/
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org.mitk.gui.qt.common.legacy/
src/
org.mitk.gui.qt.common/
src/
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org.mitk.gui.qt.coreapplication/
src/
internal/
org.mitk.gui.qt.datamanager/
resources/
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org.mitk.gui.qt.diffusionimaging.connectomics/
src/
internal/
org.mitk.gui.qt.diffusionimaging.denoising/
src/
internal/
org.mitk.gui.qt.diffusionimaging.fiberfox/
src/
internal/
org.mitk.gui.qt.diffusionimaging.fiberprocessing/
src/
internal/
org.mitk.gui.qt.diffusionimaging.ivim/
src/
internal/
org.mitk.gui.qt.diffusionimaging.odfpeaks/
src/
internal/
org.mitk.gui.qt.diffusionimaging.partialvolume/
src/
internal/
org.mitk.gui.qt.diffusionimaging.preprocessing/
src/
internal/
org.mitk.gui.qt.diffusionimaging.python/
src/
internal/
org.mitk.gui.qt.diffusionimaging.reconstruction/
src/
internal/
org.mitk.gui.qt.diffusionimaging.registration/
documentation/
UserManual/
src/
internal/
org.mitk.gui.qt.diffusionimaging.tbss/
src/
internal/
org.mitk.gui.qt.diffusionimaging.tractography/
documentation/
UserManual/
src/
internal/
org.mitk.gui.qt.diffusionimaging/
src/
internal/
org.mitk.gui.qt.diffusionimagingapp/
src/
internal/
org.mitk.gui.qt.ext/
src/
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org.mitk.gui.qt.extapplication/
src/
internal/
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org.mitk.gui.qt.igt.app.echotrack/
src/
internal/
NavigationStepWidgets/
org.mitk.gui.qt.igt.app.hummelprotocolmeasurements/
src/
internal/
org.mitk.gui.qt.igt.app.hummelprotocolmeasurements/
src/
internal/
org.mitk.gui.qt.multilabelsegmentation/
src/
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org.mitk.gui.qt.igttracking/
src/
internal/
org.mitk.gui.qt.imagecropper/
documentation/
UserManual/
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resources/
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src/
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org.mitk.gui.qt.lasercontrol/
resources/
org.mitk.gui.qt.measurementtoolbox/
resources/
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org.mitk.gui.qt.moviemaker/
documentation/
UserManual/
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resources/
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src/
internal/
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org.mitk.gui.qt.multilabelsegmentation/
src/
internal/
org.mitk.gui.qt.photoacoustics.imageprocessing/
resources/
src/
internal/
org.mitk.gui.qt.photoacoustics.imageprocessing/
src/
internal/
org.mitk.gui.qt.multilabelsegmentation/
src/
internal/
org.mitk.gui.qt.photoacoustics.pausviewer/
resources/
org.mitk.gui.qt.photoacoustics.simulation/
resources/
src/
internal/
org.mitk.gui.qt.pointsetinteraction/
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org.mitk.gui.qt.preprocessing.resampling/
src/
internal/
org.mitk.gui.qt.properties/
resources/
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org.mitk.gui.qt.segmentation/
documentation/
UserManual/
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org.mitk.gui.qt.tofutil/
src/
internal/
org.mitk.gui.qt.viewnavigator/
resources/
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Plugins/
org.mitk.gui.qt.imagecropper/
src/
internal/
Modules/
IGTBase/
include/
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rMITK07487e3748ce

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Applications/PluginGenerator/ProjectTemplate/CMakeLists.txt

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CMake/BuildConfigurations/mitkNavigationModules.cmake

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CMake/GetPrerequisites.cmake

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CMake/MITKDashboardScript.TEMPLATE.cmake

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CMake/MITKDashboardSetup.cmake

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CMake/mitkFunctionCreateModule.cmake

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CMake/mitkLanguageOptions.cmake

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CMake/mitkMacroInstall.cmake

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CMake/mitkMacroInstallTargets.cmake

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CMake/mitkSetupCPack.cmake

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CMakeExternals/CTK.cmake

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CMakeExternals/ITK.cmake

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CMakeExternals/MITKData.cmake

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CMakeExternals/OpenIGTLink.cmake

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CMakeExternals/QwtCMakeLists.txt

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CMakeLists.txt

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Documentation/Doxygen/3-DeveloperManual/Application/Deployment.dox

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Modules/AlgorithmsExt/files.cmake

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Modules/BasicImageProcessing/src/mitkArithmeticOperation.cpp

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Modules/CameraCalibration/mitkCameraIntrinsics.h

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Modules/CameraCalibration/mitkCvMatFromVnlMatrix.h

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Modules/CameraCalibration/mitkStringFromCvMat.h

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Modules/Classification/CLMiniApps/ManualSegmentationEvaluation.cpp

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Modules/Classification/CLMiniApps/NativeHeadCTSegmentation.cpp

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Modules/Classification/CLMiniApps/RandomForestTraining.cpp

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Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFImageDescriptionFeatures.cpp

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Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFVolumetricStatistics.cpp

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Modules/Core/CMakeLists.txt

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Modules/Core/include/mitkLexicalCast.h

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Modules/Core/src/DataManagement/mitkMemoryUtilities.cpp

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Modules/Core/src/IO/mitkGeometry3DToXML.cpp

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Modules/Core/src/Rendering/mitkVtkPropRenderer.cpp

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Modules/Core/test/DirectOverlayTest.cpp

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Modules/Core/test/mitkFloatToStringTest.cpp

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Modules/Core/test/mitkImageDataItemTest.cpp

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Modules/CppMicroServices/CMakeLists.txt

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Modules/CppMicroServices/cmake/usCTestScript_custom.cmake

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Modules/DICOMReader/src/mitkDICOMTagBasedSorter.cpp

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Modules/DicomRT/autoload/IO/mitkRTDoseReaderService.cpp

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Modules/DiffusionImaging/DiffusionCore/autoload/IO/mitkDiffusionImageDicomReaderService.cpp

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Modules/DiffusionImaging/DiffusionCore/autoload/IO/mitkNrrdTensorImageReader.cpp

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Modules/DiffusionImaging/DiffusionCore/cmdapps/ResampleGradients.cpp

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Modules/DiffusionImaging/DiffusionIO/mitkFiberBundleDicomReader.cpp

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Modules/DiffusionImaging/DiffusionIO/mitkFiberBundleTckReader.cpp

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Modules/DiffusionImaging/DiffusionIO/mitkPlanarFigureCompositeReader.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkGibbsTrackingFilter.cpp

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Modules/DiffusionImaging/FiberTracking/Algorithms/itkStreamlineTrackingFilter.cpp

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Modules/DiffusionImaging/FiberTracking/Fiberfox/itkTractsToDWIImageFilter.cpp

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Modules/DiffusionImaging/FiberTracking/IODataStructures/mitkFiberfoxParameters.cpp

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Modules/DiffusionImaging/FiberTracking/Testing/mitkLocalFiberPlausibilityTest.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberClustering.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberDirectionExtraction.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberExtraction.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberExtractionRoi.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberProcessing.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/GetOverlappingTracts.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/Sift2WeightCopy.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/TractDensity.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/TractDensityFilter.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/Fiberfox.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/FiberfoxOptimization.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/PeakExtraction.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/PythonTest.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/AnchorConstrainedPlausibility.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/ExtractSimilarTracts.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/LocalDirectionalFiberPlausibility.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/MergeOverlappingTracts.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/PeaksAngularError.cpp

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Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractometerMetrics.cpp

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Modules/DiffusionImaging/Quantification/IODataStructures/TbssImages/mitkNrrdTbssImageWriter.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/MultishellMethods.cpp

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Modules/DiffusionImaging/Quantification/cmdapps/QballReconstruction.cpp

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Modules/IGT/TrackingDevices/mitkNDIAuroraTypeInformation.cpp

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Modules/IGTBase/include/mitkIGTMimeTypes.h

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Modules/IGTUI/Qmitk/QmitkNDIAuroraWidget.ui

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Modules/IGTUI/Qmitk/QmitkNavigationToolCreationWidget.ui

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Modules/IGTUI/Qmitk/QmitkNavigationToolManagementWidgetControls.ui

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Modules/OpenCVVideoSupport/Commands/mitkBasicCombinationOpenCVImageFilter.cpp

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Modules/OpenCVVideoSupport/UI/QmitkOpenCVVideoControls.h

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Modules/OpenCVVideoSupport/mitkOpenCVImageSource.h

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Modules/OpenCVVideoSupport/mitkUndistortCameraImage.h

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Modules/OpenCVVideoSupport/mitkVideoInputSource.h

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Modules/QtWidgets/src/QmitkRenderWindowMenu.cpp

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Modules/QtWidgets/src/mitkQtWidgetsActivator.h

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Modules/SceneSerializationBase/include/mitkStringsToNumbers.h

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Modules/SceneSerializationBase/include/mitkVectorPropertySerializer.h

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Modules/SceneSerializationBase/src/mitkDoublePropertySerializer.cpp

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Modules/SceneSerializationBase/src/mitkFloatLookupTablePropertySerializer.cpp

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Modules/SceneSerializationBase/src/mitkLevelWindowPropertySerializer.cpp

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Modules/SceneSerializationBase/src/mitkTransferFunctionPropertySerializer.cpp

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Modules/SceneSerializationBase/test/mitkVectorPropertySerializerTest.cpp

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Modules/ToFProcessing/mitkToFCompositeFilter.cpp

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Modules/ToFProcessing/mitkToFCompositeFilter.h

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Modules/ToFProcessing/mitkToFDistanceImageToSurfaceFilter.h

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Modules/ToFUI/Qmitk/QmitkToFCompositeFilterWidget.cpp

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Modules/ToFUI/Qmitk/QmitkToFCompositeFilterWidgetControls.ui

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Modules/ToFUI/Qmitk/QmitkToFConnectionWidgetControls.ui

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Modules/ToFUI/Qmitk/QmitkToFPointSetWidget.cpp

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Modules/ToFUI/Qmitk/QmitkToFPointSetWidget.h

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Modules/ToFUI/Qmitk/QmitkToFVisualisationSettingsWidget.cpp

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Modules/ToFUI/Qmitk/QmitkToFVisualisationSettingsWidgetControls.ui

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Modules/US/USFilters/mitkUSImageSource.h

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Modules/US/USFilters/mitkUSImageVideoSource.cpp

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Modules/US/USModel/mitkUSDevice.cpp

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Modules/US/USModel/mitkUSDevice.h

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Modules/US/USModel/mitkUSDevicePersistence.cpp

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Modules/US/USModel/mitkUSDeviceReaderWriterConstants.h

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Modules/US/USModel/mitkUSDeviceReaderXML.cpp

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Modules/US/USModel/mitkUSDeviceReaderXML.h

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Modules/US/USModel/mitkUSDeviceWriterXML.cpp

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Modules/US/USModel/mitkUSDeviceWriterXML.h

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Modules/US/USModel/mitkUSProbe.cpp

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Modules/US/USModel/mitkUSProbe.h

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Modules/US/USModel/mitkUSVideoDevice.cpp

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Modules/US/USModel/mitkUSVideoDevice.h

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Modules/US/USModel/mitkUSVideoDeviceCustomControls.cpp

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Modules/USUI/Qmitk/QmitkUSControlsBModeWidget.cpp

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Modules/USUI/Qmitk/QmitkUSControlsBModeWidget.ui

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Modules/USUI/Qmitk/QmitkUSControlsCustomVideoDeviceWidget.cpp

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Modules/USUI/Qmitk/QmitkUSNewVideoDeviceWidget.cpp

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Modules/USUI/Qmitk/QmitkUSNewVideoDeviceWidget.h

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Modules/USUI/Qmitk/QmitkUSNewVideoDeviceWidgetControls.ui

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Plugins/org.mitk.gui.qt.cest/src/internal/org_mitk_gui_qt_cest_Activator.h

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberfox/src/internal/QmitkFieldmapGeneratorViewControls.ui

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberClusteringViewControls.ui

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberFitViewControls.ui

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberQuantificationView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkTractometryView.cpp

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