Merge branch 'master' into niftk
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mitkSetupVariables.cmake

CMakeExternals/

MITKData.cmake

VTK.cmake

mitkClippedSurfaceBoundsCalculator.cpp

Core/

Code/

Algorithms/

mitkExtractSliceFilter.cpp

mitkExtractSliceFilter.h

mitkPPArithmeticDec.h

mitkPPCat.h

mitkPPConfig.h

mitkPPControlExprIIf.h

mitkPPControlIIf.h

mitkPPControlIf.h

mitkPPDebugError.h

mitkPPDetailAutoRec.h

mitkPPDetailDMCAutoRec.h

mitkPPExpand.h

mitkPPFacilitiesEmpty.h

mitkPPFacilitiesExpand.h

mitkPPLogicalBool.h

mitkPPRepetitionDetailDMCFor.h

mitkPPRepetitionDetailEDGFor.h

mitkPPRepetitionDetailFor.h

mitkPPRepetitionDetailMSVCFor.h

mitkPPRepetitionFor.h

mitkPPSeqForEachProduct.h

Controllers/

mitkPlanePositionManager.cpp

DataManagement/

mitkChannelDescriptor.cpp

mitkImageDescriptor.cpp

mitkImageStatisticsHolder.cpp

mitkImageStatisticsHolder.h

IO/

mitkPixelTypeMultiplex.h

Interactions/

mitkCrosshairPositionEvent.cpp

Rendering/

mitkImageVtkMapper2D.cpp

mitkImageVtkMapper2D.h

Testing/

mitkDICOMTestingSanityTest.cpp

DICOMTesting/

DumpDICOMMitkImage.cpp

Testing/

VerifyDICOMMitkImageDump.cpp

mitkTestDICOMLoading.cpp

mitkTestDICOMLoading.h

mitkExtractSliceFilterTest.cpp

mitkImageVtkMapper2DColorTest.cpp

mitkImageVtkMapper2DLevelWindowTest.cpp

mitkImageVtkMapper2DOpacityTest.cpp

mitkImageVtkMapper2DTest.cpp

mitkPlanePositionManagerTest.cpp

mitkRenderingTestHelper.cpp

mitkRenderingTestHelper.h

uServicesBaseObject.h

mitkVnlVectorFixedCaster.h

Documentation/

Doxygen/

Concepts/

Documentation/

Doxygen/

DeveloperManual/

BuildInstructions.dox

Examples/

MbiLog/

	QtAppExample/
	Tutorial/

Step1.cpp

Tutorial/

Step1.cpp

Step2.cpp

Step6RegionGrowing.txx

mitkWithITKAndVTK.cpp

Modules/

CameraCalibration/

mitkAlgorithm.h

mitkCameraIntrinsics.cpp

mitkCvMatCompare.h

mitkCvMatFromVnlMatrix.h

mitkCvMatFromVnlVector.h

mitkStringFromCvMat.h

mitkTransform.cpp

mitkTransform.h

mitkVnlMatrixFromCvMat.h

mitkVnlVectorCaster.h

mitkVnlVectorFromCvMat.h

mitkXMLSerializable.cpp

mitkXMLSerializable.h

ClippingTools/

mitkClippingPlaneDeformationTool.cpp

mitkClippingPlaneRotationTool.cpp

mitkClippingPlaneTranslationTool.cpp

DiffusionImaging/

Algorithms/

itkDiffusionQballGeneralizedFaImageFilter.txx

itkDiffusionQballPrepareVisualizationImageFilter.cpp

itkDiffusionTensorPrincipleDirectionImageFilter.txx

itkExtractChannelFromRgbaImageFilter.cpp

itkExtractChannelFromRgbaImageFilter.h

itkReduceDirectionGradientsFilter.h

itkReduceDirectionGradientsFilter.txx

itkResidualImageFilter.h

itkResidualImageFilter.txx

itkTensorDerivedMeasurementsFilter.txx

itkTensorImageToDiffusionImageFilter.h

itkTensorImageToDiffusionImageFilter.txx

itkTensorImageToQBallImageFilter.h

itkTensorImageToQBallImageFilter.txx

itkTensorReconstructionWithEigenvalueCorrectionFilter.h

itkTensorReconstructionWithEigenvalueCorrectionFilter.txx

itkTensorToL2NormImageFilter.h

itkTensorToL2NormImageFilter.txx

itkTractDensityImageFilter.cpp

itkTractDensityImageFilter.h

itkTractsToFiberEndingsImageFilter.cpp

itkTractsToFiberEndingsImageFilter.h

itkTractsToRgbaImageFilter.cpp

itkTractsToRgbaImageFilter.h

mitkTractAnalyzer.cpp

IODataStructures/

DiffusionWeightedImages/

mitkDiffusionImage.h

mitkDiffusionImage.txx

FiberBundleX/

mitkFiberBundleX.cpp

mitkFiberBundleX.h

mitkFiberBundleXReader.h

PlanarFigureComposite/

mitkPlanarFigureComposite.cpp

mitkPlanarFigureComposite.h

TbssImages/

mitkNrrdTbssImageReader.cpp

Reconstruction/

itkAnalyticalDiffusionQballReconstructionImageFilter.cpp

itkAnalyticalDiffusionQballReconstructionImageFilter.h

itkDiffusionMultiShellQballReconstructionImageFilter.cpp

itkDiffusionMultiShellQballReconstructionImageFilter.h

Rendering/

mitkFiberBundleXMapper2D.cpp

Testing/

mitkFiberBundleXReaderWriterTest.cpp

mitkFiberBundleXTest.cpp

Tractography/

GibbsTracking/

BuildFibres.cpp

EnergyComputerBase.cpp

EnergyComputer_connec.cpp

SphereInterpolator.cpp

auxilary_classes.cpp

pcRJMCMC.cpp

StochasticTracking/

itkSlowPolyLineParametricPath.h

itkSlowPolyLineParametricPath.txx

itkStochasticTractographyFilter_SD.txx

itkGibbsTrackingFilter.cpp

itkGibbsTrackingFilter.h

itkStochasticTractographyFilter.h

itkStochasticTractographyFilter.txx

mitkDiffusionFunctionCollection.cpp

mitkDiffusionFunctionCollection.h

GraphAlgorithms/

itkShortestPathCostFunction.h

itkShortestPathCostFunction.txx

itkShortestPathCostFunctionTbss.h

itkShortestPathCostFunctionTbss.txx

itkShortestPathImageFilter.h

itkShortestPathImageFilter.txx

itkShortestPathNode.cpp

itkShortestPathNode.h

IGT/

Documentation/

doxygen/

IGTModule.dox

Testing/

MITKIGTTrackingDeviceHardwareTesting.cmake

mitkNDIAuroraHardwareTest.cpp

mitkNDIPolarisHardwareTest.cpp

ImageExtraction/

Testing/

mitkExtractDirectedPlaneImageFilterTest.cpp

mitkExtractDirectedPlaneImageFilter.cpp

mitkExtractDirectedPlaneImageFilter.h

ImageStatistics/

mitkvtkImageStencilRaster.h

mitkvtkLassoStencilSource.h

mitkWiiMoteAllDataEvent.cpp

InputDevices/

WiiMote/

mitkWiiMoteAllDataEvent.h

mitkWiiMoteButtonEvent.cpp

mitkWiiMoteButtonEvent.h

mitkWiiMoteCalibrationEvent.cpp

mitkWiiMoteCalibrationEvent.h

mitkWiiMoteIREvent.cpp

mitkWiiMoteIREvent.h

mitkWiiMoteInteractor.cpp

mitkWiiMoteInteractor.h

mitkWiiMoteMultiIREvent.cpp

mitkWiiMoteMultiIREvent.h

mitkWiiMoteThread.cpp

mitkWiiMoteThread.h

mitkWiiMoteVtkCameraController.cpp

mitkWiiMoteVtkCameraController.h

wiiyourself/

LegacyAdaptors/

mitkLegacyAdaptors.cpp

mitkLegacyAdaptors.h

MitkExt/

Algorithms/

itkIntelligentBinaryClosingFilter.h

itkIntelligentBinaryClosingFilter.txx

mitkvtkImageStencilRaster.h

mitkvtkLassoStencilSource.h

DataManagement/

Interactions/

Rendering/

vtkMitkGPUVolumeRayCastMapper.cpp

vtkMitkGPUVolumeRayCastMapper.h

vtkMitkOpenGLGPUVolumeRayCastMapper.cpp

vtkMitkOpenGLGPUVolumeRayCastMapper.h

vtkMitkOpenGLGPUVolumeRayCastMapperShaders.cpp

OpenCVVideoSupport/

mitkOpenCVImageSource.h

mitkVideoInputSource.cpp

mitkVideoInputSource.h

Overlays/

QmitkCustomWidgetOverlay.cpp

QmitkCustomWidgetOverlay.h

QmitkOverlay.cpp

QmitkOverlay.h

QmitkOverlayController.cpp

mitkPlanarFigureControlPointStyleProperty.cpp

PlanarFigure/

DataManagement/

QmitkCorrespondingPointSetsWidget.cpp

Qmitk/

QmitkProgressBar.cpp

QmitkExt/

QmitkClosingToolGUI.cpp

QmitkClosingToolGUI.h

QmitkCorrespondingPointSetsWidget.h

QmitkDilateToolGUI.cpp

QmitkDilateToolGUI.h

QmitkErodeToolGUI.cpp

QmitkErodeToolGUI.h

QmitkOpeningToolGUI.cpp

QmitkOpeningToolGUI.h

QmitkPointListWidget.cpp

QmitkPointListWidget.h

SceneSerialization/

mitkSceneReaderV1.cpp

itkAdaptiveThresholdIterator.h

Segmentation/

Algorithms/

itkAdaptiveThresholdIterator.txx

itkConnectedAdaptiveThresholdImageFilter.h

itkConnectedAdaptiveThresholdImageFilter.txx

mitkBinaryThresholdTool.cpp

Interactions/

mitkSegTool2D.cpp

ToFHardware/

Testing/

mitkKinectControllerTest.cpp

mitkKinectDeviceTest.cpp

mitkToFPicImageWriterTest.cpp

mitkKinectControllerStub.cpp

mitkKinectController.cpp

mitkKinectController.h

	mitkKinectDevice.cpp
	mitkToFCameraMESADevice.cpp

	mitkKinectDevice.h
	mitkToFCameraMESADevice.h

mitkToFCameraDevice.cpp

mitkToFCameraDevice.h

mitkToFCameraMESADevice.cpp

mitkToFCameraMESADevice.h

mitkToFCameraMESASR4000Device.cpp

mitkToFCameraMITKPlayerController.cpp

mitkToFCameraMITKPlayerController.h

mitkToFCameraMITKPlayerDevice.cpp

mitkToFCameraMITKPlayerDevice.h

mitkToFCameraPMDCamBoardDevice.cpp

mitkToFCameraPMDCamCubeDevice.cpp

mitkToFCameraPMDDevice.cpp

mitkToFCameraPMDDevice.h

mitkToFCameraPMDPlayerDevice.cpp

mitkToFCameraPMDRawDataCamBoardDevice.cpp

mitkToFCameraPMDRawDataCamCubeDevice.cpp

mitkToFCameraPMDRawDataDevice.cpp

mitkToFCameraPMDRawDataDevice.h

mitkToFConfig.h.in

mitkToFHardware.cmake

mitkToFImageCsvWriter.cpp

mitkToFImageCsvWriter.h

mitkToFImageGrabber.cpp

mitkToFImageGrabber.h

mitkToFImageRecorder.cpp

mitkToFImageRecorder.h

mitkToFImageRecorderFilter.cpp

mitkToFImageWriter.cpp

mitkToFImageWriter.h

mitkToFNrrdImageWriter.cpp

mitkToFNrrdImageWriter.h

mitkToFOpenCVImageGrabber.cpp

mitkToFPicImageWriter.cpp

mitkToFPicImageWriter.h

ToFProcessing/

mitkToFTestingCommon.h

ToFUI/

Qmitk/

QmitkKinectParameterWidget.cpp

QmitkKinectParameterWidget.h

QmitkKinectParameterWidgetControls.ui

QmitkToFConnectionWidget.cpp

QmitkToFConnectionWidget.h

QmitkToFConnectionWidgetControls.ui

QmitkToFRecorderWidget.cpp

QmitkToFRecorderWidget.h

QmitkToFVisualisationSettingsWidget.cpp

QmitkToFVisualisationSettingsWidget.h

US/

Testing/

mitkUSImageVideoSourceTest.cpp

mitkUSPipelineTest.cpp

Plugins/

org.mitk.core.jobs/

src/

internal/

mitkBasicImageProcessingActivator.cpp

org.mitk.gui.qt.basicimageprocessing/

src/

internal/

mitkBasicImageProcessingActivator.h

org.mitk.gui.qt.common/

testing/

src/

internal/

org.mitk.gui.qt.datamanager/

src/

internal/

mitkIContextMenuAction.h

QmitkPreprocessingView.cpp

org.mitk.gui.qt.diffusionimaging/

src/

internal/

QmitkPreprocessingViewControls.ui

QmitkTensorReconstructionView.cpp

QmitkTractbasedSpatialStatisticsView.cpp

deprecated/

QmitkDiffusionTensorIcon.h

org.mitk.gui.qt.examples/

src/

internal/

org.mitk.gui.qt.examplesopencv/

src/

internal/

org.mitk.gui.qt.igtexamples/

documentation/

UserManual/

Manual.dox

src/

internal/

mitkImageCropperPluginActivator.cpp

org.mitk.gui.qt.imagecropper/

src/

internal/

mitkImageCropperPluginActivator.h

mitkImageNavigatorPluginActivator.cpp

org.mitk.gui.qt.imagenavigator/

src/

internal/

mitkImageNavigatorPluginActivator.h

mitkMaterialEditorPluginActivator.cpp

org.mitk.gui.qt.materialeditor/

src/

internal/

mitkMaterialEditorPluginActivator.h

org.mitk.gui.qt.measurementtoolbox/

src/

internal/

org.mitk.gui.qt.meshdecimation/

src/

internal/

mitkMovieMakerPluginActivator.cpp

org.mitk.gui.qt.moviemaker/

src/

internal/

mitkMovieMakerPluginActivator.h

org.mitk.gui.qt.pointsetinteraction/

src/

internal/

org.mitk.gui.qt.python.console/

src/

internal/

org.mitk.gui.qt.registration/

src/

internal/

org.mitk.gui.qt.segmentation/

src/

internal/

QmitkAutocropAction.cpp

QmitkAutocropAction.h

QmitkCreatePolygonModelAction.cpp

QmitkCreatePolygonModelAction.h

QmitkSegmentationView.cpp

QmitkStatisticsAction.cpp

QmitkStatisticsAction.h

QmitkThresholdAction.cpp

QmitkThresholdAction.h

org.mitk.gui.qt.toftutorial/

src/

internal/

org.mitk.gui.qt.tofutil/

src/

internal/

QmitkToFUtilView.cpp

QmitkToFUtilView.h

org.mitk.gui.qt.ugvisualization/

src/

internal/

org.mitk.gui.qt.volumevisualization/

src/

internal/

rMITK67ebb89cf2ec

Applications/mitkDiffusion/QDiffusionImagingSplashScreen.cpp

BlueBerry/Bundles/org.blueberry.core.runtime/src/berryBackingStoreException.cpp

BlueBerry/Bundles/org.blueberry.core.runtime/src/berryBackingStoreException.h

BlueBerry/Bundles/org.blueberry.core.runtime/src/berryIBerryPreferences.h

BlueBerry/Bundles/org.blueberry.core.runtime/src/berryIBerryPreferencesService.h

BlueBerry/Bundles/org.blueberry.core.runtime/src/berryIPreferences.h

BlueBerry/Bundles/org.blueberry.core.runtime/src/berryIPreferencesService.cpp

BlueBerry/Bundles/org.blueberry.core.runtime/src/berryIPreferencesService.h

BlueBerry/Bundles/org.blueberry.core.runtime/src/internal/berryAbstractPreferencesStorage.cpp

BlueBerry/Bundles/org.blueberry.core.runtime/src/internal/berryAbstractPreferencesStorage.h

BlueBerry/Bundles/org.blueberry.core.runtime/src/internal/berryPreferences.cpp

BlueBerry/Bundles/org.blueberry.core.runtime/src/internal/berryPreferences.h

BlueBerry/Bundles/org.blueberry.core.runtime/src/internal/berryPreferencesService.cpp

BlueBerry/Bundles/org.blueberry.core.runtime/src/internal/berryPreferencesService.h

BlueBerry/Bundles/org.blueberry.core.runtime/src/internal/berryXMLPreferencesStorage.cpp

BlueBerry/Bundles/org.blueberry.core.runtime/src/internal/berryXMLPreferencesStorage.h

BlueBerry/Bundles/org.blueberry.osgi/src/berryStackTrace.cpp

BlueBerry/Bundles/org.blueberry.osgi/src/berryStackTrace.h

BlueBerry/Bundles/org.blueberry.osgi/src/service/berryIExecutableExtension.h

BlueBerry/Bundles/org.blueberry.ui/src/berryIWorkbenchPartConstants.cpp

BlueBerry/Bundles/org.blueberry.ui/src/berryIWorkbenchPartConstants.h

BlueBerry/Bundles/org.blueberry.ui/src/berrySelectionChangedEvent.h

BlueBerry/Bundles/org.blueberry.ui/src/internal/berryPartList.cpp

BlueBerry/Bundles/org.blueberry.ui/src/internal/berryPartList.h

BlueBerry/Bundles/org.blueberry.ui/src/internal/berryPartService.cpp

BlueBerry/Bundles/org.blueberry.ui/src/internal/berryPartService.h

CMake/mitkMacroCreateModule.cmake

CMake/mitkSetupVariables.cmake

CMakeExternals/MITKData.cmake

CMakeExternals/VTK.cmake

Core/Code/Algorithms/mitkClippedSurfaceBoundsCalculator.cpp

Core/Code/Algorithms/mitkExtractSliceFilter.cpp

Core/Code/Algorithms/mitkExtractSliceFilter.h

Core/Code/Algorithms/mitkPPArithmeticDec.h

Core/Code/Algorithms/mitkPPCat.h

Core/Code/Algorithms/mitkPPConfig.h

Core/Code/Algorithms/mitkPPControlExprIIf.h

Core/Code/Algorithms/mitkPPControlIIf.h

Core/Code/Algorithms/mitkPPControlIf.h

Core/Code/Algorithms/mitkPPDebugError.h

Core/Code/Algorithms/mitkPPDetailAutoRec.h

Core/Code/Algorithms/mitkPPDetailDMCAutoRec.h

Core/Code/Algorithms/mitkPPExpand.h

Core/Code/Algorithms/mitkPPFacilitiesEmpty.h

Core/Code/Algorithms/mitkPPFacilitiesExpand.h

Core/Code/Algorithms/mitkPPLogicalBool.h

Core/Code/Algorithms/mitkPPRepetitionDetailDMCFor.h

Core/Code/Algorithms/mitkPPRepetitionDetailEDGFor.h

Core/Code/Algorithms/mitkPPRepetitionDetailFor.h

Core/Code/Algorithms/mitkPPRepetitionDetailMSVCFor.h

Core/Code/Algorithms/mitkPPRepetitionFor.h

Core/Code/Algorithms/mitkPPSeq.h

Core/Code/Algorithms/mitkPPSeqElem.h

Core/Code/Algorithms/mitkPPSeqEnum.h

Core/Code/Algorithms/mitkPPSeqForEach.h

Core/Code/Algorithms/mitkPPSeqForEachProduct.h

Core/Code/Algorithms/mitkPPSeqSize.h

Core/Code/Algorithms/mitkPPSeqToTuple.h

Core/Code/Algorithms/mitkPPStringize.h

Core/Code/Algorithms/mitkPPTupleEat.h

Core/Code/Algorithms/mitkPPTupleElem.h

Core/Code/Algorithms/mitkPPTupleRem.h

Core/Code/Controllers/mitkPlanePositionManager.cpp

Core/Code/DataManagement/mitkChannelDescriptor.cpp

Core/Code/DataManagement/mitkImageDescriptor.cpp

Core/Code/DataManagement/mitkImageStatisticsHolder.cpp

Core/Code/DataManagement/mitkImageStatisticsHolder.h

Core/Code/IO/mitkPixelTypeMultiplex.h

Core/Code/Interactions/mitkCrosshairPositionEvent.cpp

Core/Code/Rendering/mitkImageVtkMapper2D.cpp

Core/Code/Rendering/mitkImageVtkMapper2D.h

Core/Code/Testing/CMakeLists.txt

Core/Code/Testing/DICOMTesting/DumpDICOMMitkImage.cpp

Core/Code/Testing/DICOMTesting/Testing/mitkDICOMTestingSanityTest.cpp

Core/Code/Testing/DICOMTesting/VerifyDICOMMitkImageDump.cpp

Core/Code/Testing/DICOMTesting/mitkTestDICOMLoading.cpp

Core/Code/Testing/DICOMTesting/mitkTestDICOMLoading.h

Core/Code/Testing/files.cmake

Core/Code/Testing/mitkExtractSliceFilterTest.cpp

Core/Code/Testing/mitkImageVtkMapper2DColorTest.cpp

Core/Code/Testing/mitkImageVtkMapper2DLevelWindowTest.cpp

Core/Code/Testing/mitkImageVtkMapper2DOpacityTest.cpp

Core/Code/Testing/mitkImageVtkMapper2DTest.cpp

Core/Code/Testing/mitkPlanePositionManagerTest.cpp

Core/Code/Testing/mitkRenderingTestHelper.cpp

Core/Code/Testing/mitkRenderingTestHelper.h

Core/Code/Testing/uServicesBaseObject.h

Core/Code/files.cmake

Core/Documentation/Doxygen/Concepts/Concepts.dox

Core/Documentation/Doxygen/Concepts/Exceptions.dox

Core/Documentation/Doxygen/Concepts/Logging.dox

Documentation/CMakeLists.txt

Documentation/Doxygen/DeveloperManual/BuildInstructions.dox

Documentation/doxygen.conf.in

Examples/CMakeLists.txt

Examples/MbiLog/MitkLogExample.cpp

Examples/QtAppExample/CMakeLists.txt

Examples/QtAppExample/Step1.cpp

Examples/Tutorial/Step1.cpp

Examples/Tutorial/Step2.cpp

Examples/Tutorial/Step6RegionGrowing.txx

Examples/Tutorial/mitkWithITKAndVTK.cpp

Modules/CameraCalibration/mitkAlgorithm.h

Modules/CameraCalibration/mitkCameraIntrinsics.cpp

Modules/CameraCalibration/mitkCvMatCompare.h

Modules/CameraCalibration/mitkCvMatFromVnlMatrix.h

Modules/CameraCalibration/mitkCvMatFromVnlVector.h

Modules/CameraCalibration/mitkEndoDebug.cpp

Modules/CameraCalibration/mitkEndoDebug.h

Modules/CameraCalibration/mitkEndoMacros.h

Modules/CameraCalibration/mitkEpsilon.h

Modules/CameraCalibration/mitkObservable.h

Modules/CameraCalibration/mitkStringFromCvMat.h

Modules/CameraCalibration/mitkTransform.cpp

Modules/CameraCalibration/mitkTransform.h

Modules/CameraCalibration/mitkVnlMatrixFromCvMat.h

Modules/CameraCalibration/mitkVnlVectorCaster.h

Modules/CameraCalibration/mitkVnlVectorFixedCaster.h

Modules/CameraCalibration/mitkVnlVectorFromCvMat.h

Modules/CameraCalibration/mitkXMLSerializable.cpp

Modules/CameraCalibration/mitkXMLSerializable.h

Modules/ClippingTools/mitkClippingPlaneDeformationTool.cpp

Modules/ClippingTools/mitkClippingPlaneRotationTool.cpp

Modules/ClippingTools/mitkClippingPlaneTranslationTool.cpp

Modules/DiffusionImaging/Algorithms/itkDiffusionQballGeneralizedFaImageFilter.txx

Modules/DiffusionImaging/Algorithms/itkDiffusionQballPrepareVisualizationImageFilter.cpp

Modules/DiffusionImaging/Algorithms/itkDiffusionTensorPrincipleDirectionImageFilter.txx

Modules/DiffusionImaging/Algorithms/itkExtractChannelFromRgbaImageFilter.cpp

Modules/DiffusionImaging/Algorithms/itkExtractChannelFromRgbaImageFilter.h

Modules/DiffusionImaging/Algorithms/itkReduceDirectionGradientsFilter.h

Modules/DiffusionImaging/Algorithms/itkReduceDirectionGradientsFilter.txx

Modules/DiffusionImaging/Algorithms/itkResidualImageFilter.h

Modules/DiffusionImaging/Algorithms/itkResidualImageFilter.txx

Modules/DiffusionImaging/Algorithms/itkTensorDerivedMeasurementsFilter.txx

Modules/DiffusionImaging/Algorithms/itkTensorImageToDiffusionImageFilter.h

Modules/DiffusionImaging/Algorithms/itkTensorImageToDiffusionImageFilter.txx

Modules/DiffusionImaging/Algorithms/itkTensorImageToQBallImageFilter.h

Modules/DiffusionImaging/Algorithms/itkTensorImageToQBallImageFilter.txx

Modules/DiffusionImaging/Algorithms/itkTensorReconstructionWithEigenvalueCorrectionFilter.h

Modules/DiffusionImaging/Algorithms/itkTensorReconstructionWithEigenvalueCorrectionFilter.txx

Modules/DiffusionImaging/Algorithms/itkTensorToL2NormImageFilter.h

Modules/DiffusionImaging/Algorithms/itkTensorToL2NormImageFilter.txx

Modules/DiffusionImaging/Algorithms/itkTractDensityImageFilter.cpp

Modules/DiffusionImaging/Algorithms/itkTractDensityImageFilter.h

Modules/DiffusionImaging/Algorithms/itkTractsToFiberEndingsImageFilter.cpp

Modules/DiffusionImaging/Algorithms/itkTractsToFiberEndingsImageFilter.h

Modules/DiffusionImaging/Algorithms/itkTractsToRgbaImageFilter.cpp

Modules/DiffusionImaging/Algorithms/itkTractsToRgbaImageFilter.h

Modules/DiffusionImaging/Algorithms/mitkTractAnalyzer.cpp

Modules/DiffusionImaging/IODataStructures/DiffusionWeightedImages/mitkDiffusionImage.h

Modules/DiffusionImaging/IODataStructures/DiffusionWeightedImages/mitkDiffusionImage.txx

Modules/DiffusionImaging/IODataStructures/FiberBundleX/mitkFiberBundleX.cpp

Modules/DiffusionImaging/IODataStructures/FiberBundleX/mitkFiberBundleX.h

Modules/DiffusionImaging/IODataStructures/FiberBundleX/mitkFiberBundleXReader.h

Modules/DiffusionImaging/IODataStructures/PlanarFigureComposite/mitkPlanarFigureComposite.cpp

Modules/DiffusionImaging/IODataStructures/PlanarFigureComposite/mitkPlanarFigureComposite.h

Modules/DiffusionImaging/IODataStructures/TbssImages/mitkNrrdTbssImageReader.cpp

Modules/DiffusionImaging/Reconstruction/itkAnalyticalDiffusionQballReconstructionImageFilter.cpp

Modules/DiffusionImaging/Reconstruction/itkAnalyticalDiffusionQballReconstructionImageFilter.h

Modules/DiffusionImaging/Reconstruction/itkDiffusionMultiShellQballReconstructionImageFilter.cpp

Modules/DiffusionImaging/Reconstruction/itkDiffusionMultiShellQballReconstructionImageFilter.h

Modules/DiffusionImaging/Rendering/mitkFiberBundleXMapper2D.cpp

Modules/DiffusionImaging/Testing/CMakeLists.txt

Modules/DiffusionImaging/Testing/files.cmake

Modules/DiffusionImaging/Testing/mitkFiberBundleXReaderWriterTest.cpp

Modules/DiffusionImaging/Testing/mitkFiberBundleXTest.cpp

Modules/DiffusionImaging/Tractography/GibbsTracking/BuildFibres.cpp

Modules/DiffusionImaging/Tractography/GibbsTracking/EnergyComputerBase.cpp

Modules/DiffusionImaging/Tractography/GibbsTracking/EnergyComputer_connec.cpp

Modules/DiffusionImaging/Tractography/GibbsTracking/MersenneTwister.h

Modules/DiffusionImaging/Tractography/GibbsTracking/ParticleGrid.cpp

Modules/DiffusionImaging/Tractography/GibbsTracking/RJMCMCBase.cpp

Modules/DiffusionImaging/Tractography/GibbsTracking/RJMCMC_randshift.cpp

Modules/DiffusionImaging/Tractography/GibbsTracking/SphereInterpolator.cpp

Modules/DiffusionImaging/Tractography/GibbsTracking/auxilary_classes.cpp

Modules/DiffusionImaging/Tractography/GibbsTracking/pcRJMCMC.cpp

Modules/DiffusionImaging/Tractography/StochasticTracking/itkSlowPolyLineParametricPath.h

Modules/DiffusionImaging/Tractography/StochasticTracking/itkSlowPolyLineParametricPath.txx

Modules/DiffusionImaging/Tractography/StochasticTracking/itkStochasticTractographyFilter_SD.txx

Modules/DiffusionImaging/Tractography/itkGibbsTrackingFilter.cpp

Modules/DiffusionImaging/Tractography/itkGibbsTrackingFilter.h

Modules/DiffusionImaging/Tractography/itkStochasticTractographyFilter.h

Modules/DiffusionImaging/Tractography/itkStochasticTractographyFilter.txx

Modules/DiffusionImaging/files.cmake

Modules/DiffusionImaging/mitkDiffusionFunctionCollection.cpp

Modules/DiffusionImaging/mitkDiffusionFunctionCollection.h

Modules/GraphAlgorithms/itkShortestPathCostFunction.h

Modules/GraphAlgorithms/itkShortestPathCostFunction.txx

Modules/GraphAlgorithms/itkShortestPathCostFunctionTbss.h

Modules/GraphAlgorithms/itkShortestPathCostFunctionTbss.txx

Modules/GraphAlgorithms/itkShortestPathImageFilter.h

Modules/GraphAlgorithms/itkShortestPathImageFilter.txx

Modules/GraphAlgorithms/itkShortestPathNode.cpp

Modules/GraphAlgorithms/itkShortestPathNode.h

Modules/IGT/Documentation/doxygen/IGTModule.dox

Modules/IGT/Testing/MITKIGTTrackingDeviceHardwareTesting.cmake

Modules/IGT/Testing/mitkNDIAuroraHardwareTest.cpp

Modules/IGT/Testing/mitkNDIPolarisHardwareTest.cpp

Modules/ImageExtraction/Testing/files.cmake

Modules/ImageExtraction/Testing/mitkExtractDirectedPlaneImageFilterTest.cpp

Modules/ImageExtraction/files.cmake

Modules/ImageExtraction/mitkExtractDirectedPlaneImageFilter.cpp

Modules/ImageExtraction/mitkExtractDirectedPlaneImageFilter.h

Modules/ImageStatistics/mitkvtkImageStencilRaster.h

Modules/ImageStatistics/mitkvtkLassoStencilSource.h

Modules/InputDevices/WiiMote/mitkKalmanFilter.cpp

Modules/InputDevices/WiiMote/mitkKalmanFilter.h

Modules/InputDevices/WiiMote/mitkWiiMoteAddOn.cpp

Modules/InputDevices/WiiMote/mitkWiiMoteAddOn.h

Modules/InputDevices/WiiMote/mitkWiiMoteAllDataEvent.cpp

Modules/InputDevices/WiiMote/mitkWiiMoteAllDataEvent.h

Modules/InputDevices/WiiMote/mitkWiiMoteButtonEvent.cpp

Modules/InputDevices/WiiMote/mitkWiiMoteButtonEvent.h

Modules/InputDevices/WiiMote/mitkWiiMoteCalibrationEvent.cpp

Modules/InputDevices/WiiMote/mitkWiiMoteCalibrationEvent.h

Modules/InputDevices/WiiMote/mitkWiiMoteIREvent.cpp

Modules/InputDevices/WiiMote/mitkWiiMoteIREvent.h

Modules/InputDevices/WiiMote/mitkWiiMoteInteractor.cpp

Modules/InputDevices/WiiMote/mitkWiiMoteInteractor.h

Modules/InputDevices/WiiMote/mitkWiiMoteMultiIREvent.cpp

Modules/InputDevices/WiiMote/mitkWiiMoteMultiIREvent.h

Modules/InputDevices/WiiMote/mitkWiiMoteThread.cpp

Modules/InputDevices/WiiMote/mitkWiiMoteThread.h

Modules/InputDevices/WiiMote/mitkWiiMoteVtkCameraController.cpp

Modules/InputDevices/WiiMote/mitkWiiMoteVtkCameraController.h

Modules/InputDevices/WiiMote/wiiyourself/wiimote.cpp

Modules/InputDevices/WiiMote/wiiyourself/wiimote.h

Modules/InputDevices/WiiMote/wiiyourself/wiimote_common.h

Modules/InputDevices/WiiMote/wiiyourself/wiimote_state.h

Modules/LegacyAdaptors/mitkLegacyAdaptors.cpp

Modules/LegacyAdaptors/mitkLegacyAdaptors.h

Modules/MitkExt/Algorithms/itkIntelligentBinaryClosingFilter.h

Modules/MitkExt/Algorithms/itkIntelligentBinaryClosingFilter.txx

Modules/MitkExt/Algorithms/mitkvtkImageStencilRaster.h

Modules/MitkExt/Algorithms/mitkvtkLassoStencilSource.h

Modules/MitkExt/DataManagement/mitkObjectObserver.h

Modules/MitkExt/DataManagement/mitkObjectSet.cpp

Modules/MitkExt/DataManagement/mitkObjectSet.h

Modules/MitkExt/DataManagement/mitkSet.h

Modules/MitkExt/DataManagement/mitkSetObserver.h

Modules/MitkExt/DataManagement/vtkObjectObserver.h

Modules/MitkExt/DataManagement/vtkObjectSet.cpp

Modules/MitkExt/DataManagement/vtkObjectSet.h

Modules/MitkExt/Interactions/mitkErodeTool.cpp

Modules/MitkExt/Rendering/vtkMitkGPUVolumeRayCastMapper.cpp

Modules/MitkExt/Rendering/vtkMitkGPUVolumeRayCastMapper.h

Modules/MitkExt/Rendering/vtkMitkOpenGLGPUVolumeRayCastMapper.cpp

Modules/MitkExt/Rendering/vtkMitkOpenGLGPUVolumeRayCastMapper.h

Modules/MitkExt/Rendering/vtkMitkOpenGLGPUVolumeRayCastMapperShaders.cpp

Modules/OpenCVVideoSupport/mitkOpenCVImageSource.h

Modules/OpenCVVideoSupport/mitkVideoInputSource.cpp

Modules/OpenCVVideoSupport/mitkVideoInputSource.h

Modules/Overlays/QmitkCustomWidgetOverlay.cpp

Modules/Overlays/QmitkCustomWidgetOverlay.h

Modules/Overlays/QmitkOverlay.cpp

Modules/Overlays/QmitkOverlay.h

Modules/Overlays/QmitkOverlayController.cpp

Modules/Overlays/files.cmake

Modules/PlanarFigure/DataManagement/mitkPlanarFigureControlPointStyleProperty.cpp

Modules/Qmitk/QmitkProgressBar.cpp

Modules/QmitkExt/QmitkClosingToolGUI.cpp

Modules/QmitkExt/QmitkClosingToolGUI.h

Modules/QmitkExt/QmitkCorrespondingPointSetsWidget.cpp

Modules/QmitkExt/QmitkCorrespondingPointSetsWidget.h

Modules/QmitkExt/QmitkDilateToolGUI.cpp

Modules/QmitkExt/QmitkDilateToolGUI.h

Modules/QmitkExt/QmitkErodeToolGUI.cpp

Modules/QmitkExt/QmitkErodeToolGUI.h

Modules/QmitkExt/QmitkOpeningToolGUI.cpp

Modules/QmitkExt/QmitkOpeningToolGUI.h

Modules/QmitkExt/QmitkPointListWidget.cpp

Modules/QmitkExt/QmitkPointListWidget.h

Modules/SceneSerialization/mitkSceneReaderV1.cpp

Modules/Segmentation/Algorithms/itkAdaptiveThresholdIterator.h

Modules/Segmentation/Algorithms/itkAdaptiveThresholdIterator.txx

Modules/Segmentation/Algorithms/itkConnectedAdaptiveThresholdImageFilter.h

Modules/Segmentation/Algorithms/itkConnectedAdaptiveThresholdImageFilter.txx

Modules/Segmentation/Interactions/mitkBinaryThresholdTool.cpp

Modules/Segmentation/Interactions/mitkSegTool2D.cpp

Modules/ToFHardware/CMakeLists.txt

Modules/ToFHardware/Testing/files.cmake

Modules/ToFHardware/Testing/mitkKinectControllerTest.cpp

Modules/ToFHardware/Testing/mitkKinectDeviceTest.cpp

Modules/ToFHardware/Testing/mitkToFPicImageWriterTest.cpp

Modules/ToFHardware/files.cmake

Modules/ToFHardware/mitkKinectController.cpp

Modules/ToFHardware/mitkKinectController.h

Modules/ToFHardware/mitkKinectControllerStub.cpp

Modules/ToFHardware/mitkKinectDevice.cpp

Modules/ToFHardware/mitkKinectDevice.h

Modules/ToFHardware/mitkToFCameraDevice.cpp

Modules/ToFHardware/mitkToFCameraDevice.h

Modules/ToFHardware/mitkToFCameraMESADevice.cpp

Modules/ToFHardware/mitkToFCameraMESADevice.h

Modules/ToFHardware/mitkToFCameraMESASR4000Device.cpp

Modules/ToFHardware/mitkToFCameraMITKPlayerController.cpp

Modules/ToFHardware/mitkToFCameraMITKPlayerController.h

Modules/ToFHardware/mitkToFCameraMITKPlayerDevice.cpp

Modules/ToFHardware/mitkToFCameraMITKPlayerDevice.h

Modules/ToFHardware/mitkToFCameraPMDCamBoardDevice.cpp

Modules/ToFHardware/mitkToFCameraPMDCamCubeDevice.cpp

Modules/ToFHardware/mitkToFCameraPMDDevice.cpp

Modules/ToFHardware/mitkToFCameraPMDDevice.h

Modules/ToFHardware/mitkToFCameraPMDPlayerDevice.cpp

Modules/ToFHardware/mitkToFCameraPMDRawDataCamBoardDevice.cpp

Modules/ToFHardware/mitkToFCameraPMDRawDataCamCubeDevice.cpp

Modules/ToFHardware/mitkToFCameraPMDRawDataDevice.cpp

Modules/ToFHardware/mitkToFCameraPMDRawDataDevice.h

Modules/ToFHardware/mitkToFConfig.h.in

Modules/ToFHardware/mitkToFHardware.cmake

Modules/ToFHardware/mitkToFImageCsvWriter.cpp

Modules/ToFHardware/mitkToFImageCsvWriter.h

Modules/ToFHardware/mitkToFImageGrabber.cpp

Modules/ToFHardware/mitkToFImageGrabber.h

Modules/ToFHardware/mitkToFImageRecorder.cpp

Modules/ToFHardware/mitkToFImageRecorder.h

Modules/ToFHardware/mitkToFImageRecorderFilter.cpp

Modules/ToFHardware/mitkToFImageWriter.cpp

Modules/ToFHardware/mitkToFImageWriter.h

Modules/ToFHardware/mitkToFNrrdImageWriter.cpp

Modules/ToFHardware/mitkToFNrrdImageWriter.h

Modules/ToFHardware/mitkToFOpenCVImageGrabber.cpp

Modules/ToFHardware/mitkToFPicImageWriter.cpp

Modules/ToFHardware/mitkToFPicImageWriter.h

Modules/ToFProcessing/mitkToFTestingCommon.h

Modules/ToFUI/Qmitk/QmitkKinectParameterWidget.cpp

Modules/ToFUI/Qmitk/QmitkKinectParameterWidget.h

Modules/ToFUI/Qmitk/QmitkKinectParameterWidgetControls.ui

Modules/ToFUI/Qmitk/QmitkToFConnectionWidget.cpp

Modules/ToFUI/Qmitk/QmitkToFConnectionWidget.h

Modules/ToFUI/Qmitk/QmitkToFConnectionWidgetControls.ui

Modules/ToFUI/Qmitk/QmitkToFRecorderWidget.cpp

Modules/ToFUI/Qmitk/QmitkToFRecorderWidget.h

Modules/ToFUI/Qmitk/QmitkToFVisualisationSettingsWidget.cpp

Modules/ToFUI/Qmitk/QmitkToFVisualisationSettingsWidget.h

Modules/ToFUI/files.cmake

Modules/US/Testing/CMakeLists.txt

Modules/US/Testing/mitkUSImageVideoSourceTest.cpp

Modules/US/Testing/mitkUSPipelineTest.cpp

Plugins/org.mitk.core.jobs/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.core.jobs/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.basicimageprocessing/src/internal/mitkBasicImageProcessingActivator.cpp

Plugins/org.mitk.gui.qt.basicimageprocessing/src/internal/mitkBasicImageProcessingActivator.h

Plugins/org.mitk.gui.qt.common/testing/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.common/testing/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.datamanager/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.datamanager/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.datamanager/src/mitkIContextMenuAction.h

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkPreprocessingView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkPreprocessingViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkTensorReconstructionView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkTractbasedSpatialStatisticsView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/deprecated/QmitkDiffusionTensorIcon.h

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.examples/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.examples/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.examplesopencv/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.examplesopencv/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.igtexamples/documentation/UserManual/Manual.dox

Plugins/org.mitk.gui.qt.igtexamples/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.igtexamples/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.imagecropper/src/internal/mitkImageCropperPluginActivator.cpp

Plugins/org.mitk.gui.qt.imagecropper/src/internal/mitkImageCropperPluginActivator.h

Plugins/org.mitk.gui.qt.imagenavigator/src/internal/mitkImageNavigatorPluginActivator.cpp

Plugins/org.mitk.gui.qt.imagenavigator/src/internal/mitkImageNavigatorPluginActivator.h

Plugins/org.mitk.gui.qt.materialeditor/src/internal/mitkMaterialEditorPluginActivator.cpp

Plugins/org.mitk.gui.qt.materialeditor/src/internal/mitkMaterialEditorPluginActivator.h

Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.meshdecimation/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.meshdecimation/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.moviemaker/src/internal/mitkMovieMakerPluginActivator.cpp

Plugins/org.mitk.gui.qt.moviemaker/src/internal/mitkMovieMakerPluginActivator.h

Plugins/org.mitk.gui.qt.pointsetinteraction/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.pointsetinteraction/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.python.console/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.python.console/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.registration/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.registration/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkAutocropAction.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkAutocropAction.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkCreatePolygonModelAction.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkCreatePolygonModelAction.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkStatisticsAction.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkStatisticsAction.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkThresholdAction.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkThresholdAction.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.toftutorial/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.toftutorial/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.tofutil/src/internal/QmitkToFUtilView.cpp

Plugins/org.mitk.gui.qt.tofutil/src/internal/QmitkToFUtilView.h

Plugins/org.mitk.gui.qt.tofutil/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.tofutil/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.ugvisualization/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.ugvisualization/src/internal/mitkPluginActivator.h

Plugins/org.mitk.gui.qt.volumevisualization/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.volumevisualization/src/internal/mitkPluginActivator.h