Merge branch 'develop' into feature/T27923-python-dev
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ProjectTemplate/

CMakeExternals/

MITK.cmake

CMake/

BuildConfigurations/

All.cmake

Default.cmake

camiPhotoacousticsSetup.cmake

camiPhotoacousticsWorkstation.cmake

mitkNavigationModules.cmake

MITKDashboardScript.download.cmake

PackageDepends/

MITK_ACVD_Config.cmake

MITK_Boost_Config.cmake

MITK_ITK_Config.cmake

MITK_OpenGL_Config.cmake

MITK_OpenMP_Config.cmake

MITK_OpenMesh_Config.cmake

MITK_OpenSSL_Config.cmake

MITK_Poco_Config.cmake

MITK_Python3_Config.cmake

MITK_Qt5_Config.cmake

MITK_VPX_Config.cmake

MITK_VTK_Config.cmake

MITK_cpprestsdk_Config.cmake

MITK_tinyxml2_Config.cmake

MITK_tinyxml_Config.cmake

mitkFunctionAddCustomModuleTest.cmake

mitkFunctionCreateCommandLineApp.cmake

mitkFunctionCreateMatchPointDeployedAlgorithm.cmake

mitkFunctionCreateModule.cmake

mitkFunctionCreatePlugin.cmake

mitkFunctionGetLibrarySearchPaths.cmake

mitkMacroCreateModuleTests.cmake

mitkTestDriverFiles.cmake.in

CMakeExternals/

ACVD.cmake

Boost.cmake

CTK.cmake

CppUnit-1.12.1.patch

CppUnit.cmake

CppUnitCMakeLists.txt

DCMQI.cmake

DCMTK.cmake

ExternalProjectList.cmake

GDCM.cmake

	OpenMesh.cmake
	ACVD.cmake

Qwt-6.1.0.patch

Qwt.cmake

QwtCMakeLists.txt

SWIG.cmake

VTK-8.1.0.patch

VTK-9.0.0.patch

VTK.cmake

cpprestsdk.cmake

cpprestsdk.patch

tinyxml-2.6.2.patch

tinyxml.cmake

	tinyxml2.cmake
	tinyxml.cmake

tinyxmlCMakeLists.txt

Documentation/

MITKPluginManualsList.dox

Doxygen/

2-UserManual/

MITKPluginSpecificManualsList.dox

3-DeveloperManual/

MITKModuleManualsList.dox

Starting/

SettingUpMITK/

BuildInstructions.dox

ThirdPartyLibs.dox

Toolkit/

ModuleManuals/

MITKModuleManualsList.dox

Examples/

FirstSteps/

NewModule/

autoload/

IO/

cmdapps/

Plugins/

org.mitk.example.gui.imaging/

QmitkSimpleExampleView.cpp

src/

internal/

simpleexample/

org.mitk.example.gui.regiongrowing/

Tutorial/

Step6/

Step7/

Step8/

Modules/

AlgorithmsExt/

mitkAnisotropicIterativeClosestPointRegistrationTest.cpp

test/

Annotation/

test/

AppUtil/

Transmission_15-49-35-978_filter700nm.txt

src/

mitkBaseApplication.cpp

BasicImageProcessing/

test_dfmanipulations.py

spectrometerreader.py

test_msimanipulations.py

test_msireaderwriter.py

test_normalize.py

test_nrrdreader.py

test_nrrdwriter.py

test_spectrometerreader.py

tensorflow_dataset.py

tensorflow_estimator.py

scripts

basic_checks

script_evaluate_color_checkerboard.py

commons.py

domain_adaptation

domain_adaptation_paths.py

script_analyze_da_in_silico.py

ipcai2016

script_analyze_ipcai_in_silico.py

script_analyze_ipcai_in_vivo_liver.py

script_analyze_ipcai_in_vivo_small_bowel.py

script_calculate_spectra.py

ipcai_image_hdf5.h5_list.txt

ipcai_solver.prototxt

ipcai_test.prototxt

ipcai_test_hdf5.h5_list.txt

ipcai_test_image.prototxt

ipcai_train.prototxt

ipcai_train_hdf5.h5_list.txt

script_create_hdf5_database.py

script_create_lmdb_database.py

script_test_pretrained_model.py

script_train_caffe.py

script_train_tensorflow_model.py

script_train_theano_model.py

spielewiese

monte_carlo_single_photon.py

Monte Carlo Spectra Generation - Basic tutorial.ipynb

mitkSpectroCamController.cpp

mitkSpectroCamController.h

CEST/

autoload/

IO/

resource/

cest_DKFZ.xml

mitkEndoDebugFromXmlFile.cpp

CameraCalibration/

mitkCameraIntrinsics.cpp

mitkCameraIntrinsics.h

mitkEndoDebugToXmlFile.cpp

mitkTransform.cpp

mitkTransform.h

mitkXMLSerializable.cpp

mitkXMLSerializable.h

Classification/

CLLibSVM/

test/

CLMRUtilities/

test/

CLMiniApps/

CLUtilities/

mitkCLResultXMLWriter.cpp

src/

test/

CLVigraRandomForest/

test/

ContourModel/

mitkContourModelReader.cpp

IO/

mitkContourModelReader.h

mitkContourModelSetReader.h

mitkContourModelSetWriter.cpp

mitkContourModelWriter.cpp

mitkContourModelWriter.h

Core/

TestingHelper/

mitkInteractionTestHelper.cpp

src/

mitkRenderingTestHelper.cpp

mitkGeometryDataReaderService.h

include/

mitkGeometryDataWriterService.h

mitkPlaneOrientationProperty.h

mitkPointSet.h

src/

IO/

mitkGeometry3DToXML.cpp

mitkGeometry3DToXML.h

mitkGeometryDataReaderService.cpp

mitkGeometryDataWriterService.cpp

mitkIOUtil.cpp

mitkPointSetReaderService.cpp

mitkPointSetReaderService.h

mitkPointSetWriterService.cpp

mitkPointSetWriterService.h

mitkProportionalTimeGeometryToXML.cpp

mitkProportionalTimeGeometryToXML.h

mitkSurfaceStlIO.cpp

mitkSurfaceStlIO.h

mitkPlaneGeometryDataVtkMapper3D.cpp

Rendering/

mitkSurfaceVtkMapper3D.cpp

vtkMitkLevelWindowFilter.cpp

test/

mitkGeometry3DTest.cpp

mitkImageGeneratorTest.cpp

mitkImageVtkMapper2DColorTest.cpp

mitkRotatedSlice4DTest.cpp

mitkTinyXMLTest.cpp

DICOM/

autoload/

DICOMImageIO/

mitkDICOMReaderConfigurator.h

include/

resource/

configurations/

3D/

classicreader.xml

imageposition.xml

imageposition_byacquisition.xml

imagetime.xml

instancenumber.xml

instancenumber_soft.xml

simpleinstancenumber_soft.xml

slicelocation.xml

3DnT/

classicreader.xml

imageposition.xml

imageposition_byacquisition.xml

imageposition_bytriggertime.xml

mitkDICOMReaderConfigurator.cpp

src/

DICOMTesting/

mitkNavigationDataRecorderDeprecated.cpp

DataTypesExt/

include/

src/

test/

IGT/

IO/

Testing/

mitkOpenIGTLinkTrackingDeviceTest.cpp

IGTBase/

autoload/

IO/

mitkNavigationDataReaderXML.cpp

mitkNavigationDataReaderXML.h

mitkNavigationDataSetWriterXML.cpp

IOExt/

mitkIOExtObjectFactory.cpp

Internal/

ImageExtraction/

ImageStatistics/

Testing/

mitkExtendedLabelStatisticsImageFilter.hxx

mitkPlanarFigureMaskGenerator.h

LegacyIO/

mitkPointSetReader.cpp

mitkPointSetReader.h

MapperExt/

mitkVolumeMapperVtkSmart3D.h

include/

mitkMeshMapper2D.h

mitkMeshVtkMapper3D.h

src/

mitkMeshMapper2D.cpp

mitkMeshVtkMapper3D.cpp

mitkUnstructuredGridMapper2D.cpp

mitkVolumeMapperVtkSmart3D.cpp

vtkPointSetSlicer.cxx

test/

MatchPointRegistration/

autoload/

IO/

cmdapps/

include/

itkStitchImageFilter.tpp

ModelFit/

cmdapps/

mitkScalarListLookupTablePropertySerializer.h

include/

mitkScalarListLookupTablePropertySerializer.cpp

src/

Common/

ModelFitUI/

ModuleList.cmake

Multilabel/

mitkLabelSetImageTest.cpp

Testing/

mitkLabelSetTest.cpp

autoload/

IO/

mitkLabelSetImageIO.cpp

mitkLabel.cpp

mitkLabel.h

mitkLabelSetIOHelper.cpp

mitkLabelSetIOHelper.h

OpenCL/

OpenCVVideoSupport/

mitkPropertyListsXmlFileReaderAndWriter.cpp

Persistence/

mitkPropertyListsXmlFileReaderAndWriter.h

Pharmacokinetics/

cmdapps/

mitkTwoStepLinearModel.cpp

src/

Models/

PharmacokineticsUI/

itkAnalyticSignalImageFilter.h

PhotoacousticsAlgorithms

itkAnalyticSignalImageFilter.hxx

itkBModeImageFilter.h

itkBModeImageFilter.hxx

itkCurvilinearArraySpecialCoordinatesImage.h

itkCurvilinearArraySpecialCoordinatesImage.hxx

itkFFT1DComplexConjugateToRealImageFilter.h

itkFFT1DComplexConjugateToRealImageFilter.hxx

itkFFT1DComplexToComplexImageFilter.h

itkFFT1DComplexToComplexImageFilter.hxx

itkFFT1DRealToComplexConjugateImageFilter.h

itkFFT1DRealToComplexConjugateImageFilter.hxx

itkRegionFromReferenceImageFilter.h

itkRegionFromReferenceImageFilter.hxx

itkSpectra1DImageFilter.h

itkSpectra1DImageFilter.hxx

itkSpectra1DSupportWindowImageFilter.h

itkSpectra1DSupportWindowImageFilter.hxx

itkSpectra1DSupportWindowToMaskImageFilter.h

itkSpectra1DSupportWindowToMaskImageFilter.hxx

itkTimeGainCompensationImageFilter.h

itkTimeGainCompensationImageFilter.hxx

itkVnlFFT1DComplexConjugateToRealImageFilter.h

itkVnlFFT1DComplexConjugateToRealImageFilter.hxx

itkVnlFFT1DComplexToComplexImageFilter.h

itkVnlFFT1DComplexToComplexImageFilter.hxx

itkVnlFFT1DRealToComplexConjugateImageFilter.h

itkVnlFFT1DRealToComplexConjugateImageFilter.hxx

itkPhotoacousticBModeImageFilter.h

itkPhotoacousticBModeImageFilter.hxx

MitkPABeamformingTool

PABeamformingTool.cpp

name.options.xml

MitkPAResampleCropTool

mitkPhotoacousticBModeFilter.h

PAResampleCropTool.cpp

UsedLinesCalculation.cl

mitkPhotoacousticOCLBeamformingFilter.h

mitkPhotoacousticOCLDelayCalculation.h

mitkPhotoacousticOCLUsedLinesCalculation.h

mitkBandpassFilter.h

mitkBeamformingFilter.h

mitkBeamformingSettings.h

mitkBeamformingUtils.h

mitkCastToFloatImageFilter.h

mitkCropImageFilter.h

mitkImageSliceSelectionFilter.h

mitkPhotoacousticFilterService.h

mitkPhotoacousticMotionCorrectionFilter.h

source

OpenCLFilter

mitkPhotoacousticBModeFilter.cpp

mitkPhotoacousticOCLBeamformingFilter.cpp

mitkPhotoacousticOCLDelayCalculation.cpp

mitkPhotoacousticOCLUsedLinesCalculation.cpp

filters

mitkBandpassFilter.cpp

mitkBeamformingFilter.cpp

mitkBeamformingSettings.cpp

mitkCastToFloatImageFilter.cpp

mitkCropImageFilter.cpp

mitkImageSliceSelectionFilter.cpp

mitkPhotoacousticMotionCorrectionFilter.cpp

utils

mitkBeamformingUtils.cpp

mitkPhotoacousticFilterService.cpp

test

mitkBandpassFilterTest.cpp

mitkBeamformingFilterTest.cpp

mitkCastToFloatImageFilterTest.cpp

mitkCropImageFilterTest.cpp

mitkPAFilterServiceTest.cpp

mitkPhotoacousticMotionCorrectionFilterTest.cpp

PhotoacousticsHardware

OpotekPhocusMobile.xml

STUNE.dmc

configFastTuneOPO.dmc

configSlowTuneOPO.dmc

executeFastTuneOPO.dmc

executeSlowTuneOPO.dmc

fastTuneOPO.dmc

fastTuneOPO700to900.dmc

homeOPO.dmc

opotekPhocusMobileDkfz160907.ini

MitkPAPhantomGenerator

SpectralUnmixingAppTimeEval.cpp

PAPhantomGenerator.cpp

SpectralUnmixingApp.cpp

MitkTissueBatchGenerator

TissueBatchGenerator.cpp

photoacoustics128x128.png

Resources

spectralLIB.dat

mitkPAFluenceYOffsetPair.h

include

mitkPAComposedVolume.h

mitkPAExceptions.h

mitkPAIOUtil.h

mitkPAInSilicoTissueVolume.h

mitkPALightSource.h

mitkPALinearSpectralUnmixingFilter.h

mitkPAMonteCarloThreadHandler.h

mitkPANoiseGenerator.h

mitkPAPhantomTissueGenerator.h

mitkPAProbe.h

mitkPAPropertyCalculator.h

mitkPASimulationBatchGenerator.h

mitkPASimulationBatchGeneratorParameters.h

mitkPASlicedVolumeGenerator.h

mitkPASpectralUnmixingFilterBase.h

mitkPASpectralUnmixingFilterLagrange.h

mitkPASpectralUnmixingFilterSimplex.h

mitkPASpectralUnmixingFilterVigra.h

mitkPASpectralUnmixingSO2.h

mitkPATissueGenerator.h

mitkPATissueGeneratorParameters.h

mitkPAVector.h

mitkPAVessel.h

mitkPAVesselDrawer.h

mitkPAVesselMeanderStrategy.h

mitkPAVesselProperties.h

mitkPAVesselTree.h

mitkPAVolume.h

mitkPAVolumeManipulator.h

mitkPAVesselMeanderStrategy.cpp

mitkPAVesselProperties.cpp

mitkPAVesselTree.cpp

Volume

mitkPAComposedVolume.cpp

mitkPAFluenceYOffsetPair.cpp

mitkPAInSilicoTissueVolume.cpp

mitkPAVolume.cpp

Generator

mitkPANoiseGenerator.cpp

mitkPAPhantomTissueGenerator.cpp

mitkPASimulationBatchGenerator.cpp

mitkPASimulationBatchGeneratorParameters.cpp

mitkPASlicedVolumeGenerator.cpp

mitkPATissueGenerator.cpp

mitkPAIOUtil.cpp

SUFilter

mitkPALinearSpectralUnmixingFilter.cpp

mitkPASpectralUnmixingFilterBase.cpp

mitkPASpectralUnmixingFilterLagrange.cpp

mitkPASpectralUnmixingFilterSimplex.cpp

mitkPASpectralUnmixingFilterVigra.cpp

mitkPASpectralUnmixingSO2.cpp

Utils

ProbeDesign

mitkPALightSource.cpp

mitkPAProbe.cpp

Thread

mitkPAMonteCarloThreadHandler.cpp

mitkPAPropertyCalculator.cpp

mitkPATissueGeneratorParameters.cpp

mitkPAVector.cpp

mitkPAVesselDrawer.cpp

mitkPAVolumeManipulator.cpp

mitkMCThreadHandlerTest.cpp

mitkMcxyzXmlTest.cpp

mitkPhotoacoustic3dVolumeTest.cpp

mitkPhotoacousticComposedVolumeTest.cpp

mitkPhotoacousticIOTest.cpp

mitkPhotoacousticNoiseGeneratorTest.cpp

mitkPhotoacousticTissueGeneratorTest.cpp

mitkPhotoacousticVectorTest.cpp

mitkPhotoacousticVesselMeanderStrategyTest.cpp

mitkPhotoacousticVesselTest.cpp

mitkPhotoacousticVesselTreeTest.cpp

mitkPhotoacousticVolumeTest.cpp

mitkPropertyCalculatorTest.cpp

mitkSimulationBatchGeneratorTest.cpp

mitkSlicedVolumeGeneratorTest.cpp

mitkSpectralUnmixingTest.cpp

PlanarFigure/

autoload/

IO/

mitkPlanarFigureIO.cpp

mitkPlanarFigureIO.h

test/

PythonService/

QtWidgets/

include/

QmitkRenderWindow.h

QmitkRenderWindowMenu.h

QmitkStdMultiWidget.h

QmitkMultiWidgetLayoutManager.cpp

src/

QmitkRenderWindow.cpp

QmitkRenderWindowMenu.cpp

QmitkRenderWindowWidget.cpp

QmitkStdMultiWidget.cpp

QtWidgetsExt/

REST/

test/

mitkRESTClientTest.cpp

Remeshing/

SceneSerialization/

include/

mitkSceneIO.h

mitkSceneReader.h

mitkGeometryDataSerializer.cpp

src/

mitkPropertyListDeserializer.cpp

mitkPropertyListDeserializerV1.cpp

mitkSceneIO.cpp

mitkSceneReader.cpp

mitkSceneReaderV1.cpp

mitkSceneReaderV1.h

test/

mitkSceneIOTest.cpp

mitkSceneIOTest2.cpp

mitkSceneIOTestScenarioProvider.cpp

SceneSerializationBase/

mitkBasePropertySerializer.h

include/

mitkEnumerationPropertySerializer.h

mitkLookupTablePropertySerializer.h

mitkPropertyListSerializer.h

mitkTransferFunctionPropertySerializer.h

mitkVectorPropertySerializer.h

mitkAnnotationPropertySerializer.cpp

src/

mitkBasePropertySerializer.cpp

mitkBoolLookupTablePropertySerializer.cpp

mitkBoolPropertySerializer.cpp

mitkClippingPropertySerializer.cpp

mitkColorPropertySerializer.cpp

mitkDoublePropertySerializer.cpp

mitkEnumerationPropertySerializer.cpp

mitkEnumerationSubclassesSerializer.cpp

mitkFloatLookupTablePropertySerializer.cpp

mitkFloatPropertySerializer.cpp

mitkGroupTagPropertySerializer.cpp

mitkIntLookupTablePropertySerializer.cpp

mitkIntPropertySerializer.cpp

mitkLevelWindowPropertySerializer.cpp

mitkLookupTablePropertySerializer.cpp

mitkPoint3dPropertySerializer.cpp

mitkPoint3iPropertySerializer.cpp

mitkPoint4dPropertySerializer.cpp

mitkPropertyListSerializer.cpp

mitkStringLookupTablePropertySerializer.cpp

mitkStringPropertySerializer.cpp

mitkTemporoSpatialStringPropertySerializer.cpp

mitkTransferFunctionPropertySerializer.cpp

mitkUIntPropertySerializer.cpp

mitkUShortPropertySerializer.cpp

mitkVector3DPropertySerializer.cpp

mitkPropertySerializationTest.cpp

test/

mitkVectorPropertySerializerTest.cpp

Segmentation/

mitkCreateDistanceImageFromSurfaceFilterTest.cpp

SurfaceInterpolation/

Testing/

mitkComputeContourSetNormalsFilter.cpp

mitkCreateDistanceImageFromSurfaceFilter.cpp

mitkReduceContourSetFilter.cpp

mitkReduceContourSetFilter.h

ToFHardware/

Testing/

mitkAbstractToFDeviceFactory.cpp

ToFProcessing/

Testing/

TubeGraph/

mitkTubeGraphVtkMapper3D.cpp

include/

mitkTubeGraphIO.h

src/

IO/

mitkTubeGraphIO.cpp

Rendering/

US/

mitkUSDiPhASDeviceCustomControls.cpp

USControlInterfaces/

mitkUSDiPhASDeviceCustomControls.h

itkAnalyticSignalImageFilter.h

itkAnalyticSignalImageFilter.hxx

itkBModeImageFilter.h

itkBModeImageFilter.hxx

itkFFT1DComplexToComplexImageFilter.h

itkFFT1DComplexToComplexImageFilter.hxx

itkFFT1DRealToComplexConjugateImageFilter.h

itkFFT1DRealToComplexConjugateImageFilter.hxx

itkRegionFromReferenceImageFilter.h

itkRegionFromReferenceImageFilter.hxx

itkVnlFFT1DComplexConjugateToRealImageFilter.h

itkVnlFFT1DComplexConjugateToRealImageFilter.hxx

itkVnlFFT1DComplexToComplexImageFilter.h

itkVnlFFT1DComplexToComplexImageFilter.hxx

itkVnlFFT1DRealToComplexConjugateImageFilter.h

itkVnlFFT1DRealToComplexConjugateImageFilter.hxx

mitkUSDiPhASActivator.cpp

mitkUSDiPhASActivator.h

mitkUSDiPhASBModeImageFilter.h

mitkUSDiPhASBModeImageFilter.hxx

mitkUSDiPhASCustomControls.cpp

mitkUSDiPhASCustomControls.h

mitkUSDiPhASDevice.cpp

mitkUSDiPhASDevice.h

mitkUSDiPhASImageSource.cpp

mitkUSDiPhASImageSource.h

mitkUSDiPhASProbe.cpp

mitkUSDiPhASProbe.h

mitkUSDiPhASProbesControls.cpp

mitkUSDiPhASProbesControls.h

USModel/

mitkUSDeviceReaderWriterConstants.cpp

mitkUSDeviceReaderWriterConstants.h

mitkUSDeviceReaderXML.cpp

mitkUSDeviceReaderXML.h

mitkUSDeviceWriterXML.cpp

mitkUSDeviceWriterXML.h

USNavigation/

Testing/

mitkCombinedModalityTest.cpp

mitkAbstractUltrasoundTrackerDevice.cpp

QmitkUSControlsCustomDiPhASDeviceWidget.cpp

USUI/

Qmitk/

QmitkUSControlsCustomDiPhASDeviceWidget.h

QmitkUSControlsCustomDiPhASDeviceWidget.ui

mitkUSUIActivator.cpp

Plugins/

PluginList.cmake

org.blueberry.core.runtime/

org.blueberry.ui.qt.log/

org.blueberry.ui.qt/

org.mitk.gui.qt.basicimageprocessing/

org.mitk.gui.qt.fit.genericfitting/

mitkNavigationDataCSVSequentialPlayer.h

org.mitk.gui.qt.igt.app.hummelprotocolmeasurements/

src/

internal/

org.mitk.gui.qt.igt.app.ultrasoundtrackingnavigation/

org.mitk.gui.qt.lasercontrol

QmitkLaserControlControls.ui

QmitkLaserControl.cpp

QmitkLaserControl.h

mitkLaserControlPluginActivator.cpp

mitkLaserControlPluginActivator.h

org.mitk.gui.qt.moviemaker/

QmitkMultiLabelSegmentationView.cpp

org.mitk.gui.qt.multilabelsegmentation/

src/

internal/

org.mitk.gui.qt.pharmacokinetics.concentration.mri/

org.mitk.gui.qt.pharmacokinetics.mri/

org.mitk.gui.qt.pharmacokinetics.simulation/

org.mitk.gui.qt.photoacoustics.imageprocessing

QmikPhotoacousticsImageProcessing_DataManager.png

QmikPhotoacousticsImageProcessing_Settings.png

PAImageProcessingControls.ui

PAImageProcessing.cpp

PAImageProcessing.h

org_mitk_gui_qt_photoacoustics_imageprocessing_Activator.cpp

org_mitk_gui_qt_photoacoustics_imageprocessing_Activator.h

org.mitk.gui.qt.photoacoustics.pausmotioncompensation

PAUSMotionCompensation.cpp

PAUSMotionCompensation.h

PAUSMotionCompensationControls.ui

org_mitk_gui_qt_photoacoustics_pausmotioncompensation_Activator.cpp

org_mitk_gui_qt_photoacoustics_pausmotioncompensation_Activator.h

org.mitk.gui.qt.photoacoustics.pausviewer

QmitkPAUSViewerViewControls.ui

QmitkPAUSViewerView.cpp

QmitkPAUSViewerView.h

internal

org_mitk_gui_qt_photoacoustics_pausviewer_Activator.cpp

org_mitk_gui_qt_photoacoustics_pausviewer_Activator.h

org.mitk.gui.qt.photoacoustics.simulation

org_mitk_gui_qt_photoacousticsimulation_Activator.cpp

PASimulatorControls.ui

org_mitk_gui_qt_photoacousticsimulation_Activator.h

org.mitk.gui.qt.photoacoustics.spectralunmixing

photoacoustics_spectralunmixing-dox.png

SpectralUnmixingControls.ui

org_mitk_gui_qt_photoacoustics_spectralunmixing_Activator.cpp

org_mitk_gui_qt_photoacoustics_spectralunmixing_Activator.h

org.mitk.gui.qt.preprocessing.resampling/

org.mitk.gui.qt.radiomics/

org.mitk.gui.qt.remeshing/

documentation/

UserManual/

QmitkRemeshing.dox

src/

internal/

	QmitkPluginActivator.cpp
	org_mitk_gui_qt_remeshing_Activator.cpp

QmitkRemeshingView.cpp

QmitkRemeshingView.h

QmitkRemeshingViewControls.ui

org_mitk_gui_qt_remeshing_Activator.cpp

org_mitk_gui_qt_remeshing_Activator.h

target_libraries.cmake

	org.mitk.gui.qt.remeshing/	src/	internal/
	org.mitk.gui.qt.lasercontrol/	src/	internal/

	QmitkPluginActivator.h
	mitkLaserControlPluginActivator.h

org.mitk.gui.qt.spectrocamrecorder

SpectroCamRecorderControls.ui

SpectroCamRecorder.cpp

SpectroCamRecorder.h

org_mitk_gui_qt_spectrocamrecorder_Activator.cpp

org_mitk_gui_qt_spectrocamrecorder_Activator.h

org.mitk.gui.qt.tofutil/

src/

internal/

QmitkToFUtilView.cpp

org.mitk.gui.qt.xnat/

SuperBuild.cmake

Utilities/

IpPic/

rMITK6cc04726ea60

Applications/PluginGenerator/CMakeLists.txt

Applications/PluginGenerator/ProjectTemplate/CMakeExternals/MITK.cmake

Applications/PluginGenerator/ProjectTemplate/CMakeLists.txt

CMake/BuildConfigurations/All.cmake

CMake/BuildConfigurations/Default.cmake

CMake/BuildConfigurations/camiPhotoacousticsSetup.cmake

CMake/BuildConfigurations/camiPhotoacousticsWorkstation.cmake

CMake/BuildConfigurations/mitkNavigationModules.cmake

CMake/MITKDashboardScript.download.cmake

CMake/PackageDepends/MITK_ACVD_Config.cmake

CMake/PackageDepends/MITK_Boost_Config.cmake

CMake/PackageDepends/MITK_ITK_Config.cmake

CMake/PackageDepends/MITK_OpenGL_Config.cmake

CMake/PackageDepends/MITK_OpenMP_Config.cmake

CMake/PackageDepends/MITK_OpenMesh_Config.cmake

CMake/PackageDepends/MITK_OpenSSL_Config.cmake

CMake/PackageDepends/MITK_Poco_Config.cmake

CMake/PackageDepends/MITK_Python3_Config.cmake

CMake/PackageDepends/MITK_Qt5_Config.cmake

CMake/PackageDepends/MITK_VPX_Config.cmake

CMake/PackageDepends/MITK_VTK_Config.cmake

CMake/PackageDepends/MITK_cpprestsdk_Config.cmake

CMake/PackageDepends/MITK_tinyxml2_Config.cmake

CMake/PackageDepends/MITK_tinyxml_Config.cmake

CMake/mitkFunctionAddCustomModuleTest.cmake

CMake/mitkFunctionCreateCommandLineApp.cmake

CMake/mitkFunctionCreateMatchPointDeployedAlgorithm.cmake

CMake/mitkFunctionCreateModule.cmake

CMake/mitkFunctionCreatePlugin.cmake

CMake/mitkFunctionGetLibrarySearchPaths.cmake

CMake/mitkMacroCreateModuleTests.cmake

CMake/mitkTestDriverFiles.cmake.in

CMakeExternals/ACVD.cmake

CMakeExternals/Boost.cmake

CMakeExternals/CTK.cmake

CMakeExternals/CppUnit-1.12.1.patch

CMakeExternals/CppUnit.cmake

CMakeExternals/CppUnitCMakeLists.txt

CMakeExternals/DCMQI.cmake

CMakeExternals/DCMTK.cmake

CMakeExternals/ExternalProjectList.cmake

CMakeExternals/GDCM.cmake

CMakeExternals/OpenMesh.cmake

CMakeExternals/Qwt-6.1.0.patch

CMakeExternals/Qwt.cmake

CMakeExternals/QwtCMakeLists.txt

CMakeExternals/SWIG.cmake

CMakeExternals/VTK-8.1.0.patch

CMakeExternals/VTK-9.0.0.patch

CMakeExternals/VTK.cmake

CMakeExternals/cpprestsdk.cmake

CMakeExternals/cpprestsdk.patch

CMakeExternals/tinyxml-2.6.2.patch

CMakeExternals/tinyxml.cmake

CMakeExternals/tinyxml2.cmake

CMakeExternals/tinyxmlCMakeLists.txt

CMakeLists.txt

Documentation/CMakeLists.txt

Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox

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Documentation/Doxygen/3-DeveloperManual/MITKModuleManualsList.dox

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Documentation/Doxygen/3-DeveloperManual/Toolkit/ModuleManuals/MITKModuleManualsList.dox

Examples/FirstSteps/NewModule/autoload/IO/CMakeLists.txt

Examples/FirstSteps/NewModule/cmdapps/CMakeLists.txt

Examples/Plugins/org.mitk.example.gui.imaging/CMakeLists.txt

Examples/Plugins/org.mitk.example.gui.imaging/src/internal/simpleexample/QmitkSimpleExampleView.cpp

Examples/Plugins/org.mitk.example.gui.regiongrowing/CMakeLists.txt

Examples/Tutorial/Step6/CMakeLists.txt

Examples/Tutorial/Step7/CMakeLists.txt

Examples/Tutorial/Step8/CMakeLists.txt

MITKConfig.cmake.in

Modules/AlgorithmsExt/CMakeLists.txt

Modules/AlgorithmsExt/test/mitkAnisotropicIterativeClosestPointRegistrationTest.cpp

Modules/Annotation/CMakeLists.txt

Modules/Annotation/test/files.cmake

Modules/AppUtil/CMakeLists.txt

Modules/AppUtil/src/mitkBaseApplication.cpp

Modules/BasicImageProcessing/CMakeLists.txt

Modules/Biophotonics

Modules/Biophotonics/CMakeLists.txt

Modules/Biophotonics/python

Modules/Biophotonics/python/iMC

Modules/Biophotonics/python/iMC/mc

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Modules/Biophotonics/python/iMC/mc/batches.py

Modules/Biophotonics/python/iMC/mc/create_spectrum.py

Modules/Biophotonics/python/iMC/mc/data

Modules/Biophotonics/python/iMC/mc/data/beta_carotin.txt

Modules/Biophotonics/python/iMC/mc/data/bilirubin.txt

Modules/Biophotonics/python/iMC/mc/data/colon_default.mci

Modules/Biophotonics/python/iMC/mc/data/correct.mci

Modules/Biophotonics/python/iMC/mc/data/haemoglobin.txt

Modules/Biophotonics/python/iMC/mc/dfmanipulations.py

Modules/Biophotonics/python/iMC/mc/factories.py

Modules/Biophotonics/python/iMC/mc/plot.py

Modules/Biophotonics/python/iMC/mc/sim.py

Modules/Biophotonics/python/iMC/mc/test

Modules/Biophotonics/python/iMC/mc/test/init.py

Modules/Biophotonics/python/iMC/mc/test/test_dfmanipulations.py

Modules/Biophotonics/python/iMC/mc/test/test_sim.py

Modules/Biophotonics/python/iMC/mc/test/test_tissuemodels.py

Modules/Biophotonics/python/iMC/mc/test/test_ua.py

Modules/Biophotonics/python/iMC/mc/test/test_usg.py

Modules/Biophotonics/python/iMC/mc/tissuemodels.py

Modules/Biophotonics/python/iMC/mc/usuag.py

Modules/Biophotonics/python/iMC/msi

Modules/Biophotonics/python/iMC/msi/init.py

Modules/Biophotonics/python/iMC/msi/data

Modules/Biophotonics/python/iMC/msi/data/Transmission_15-49-35-978_filter700nm.txt

Modules/Biophotonics/python/iMC/msi/data/testMsi.nrrd

Modules/Biophotonics/python/iMC/msi/imgmani.py

Modules/Biophotonics/python/iMC/msi/io

Modules/Biophotonics/python/iMC/msi/io/init.py

Modules/Biophotonics/python/iMC/msi/io/msireader.py

Modules/Biophotonics/python/iMC/msi/io/msiwriter.py

Modules/Biophotonics/python/iMC/msi/io/nrrdreader.py

Modules/Biophotonics/python/iMC/msi/io/nrrdwriter.py

Modules/Biophotonics/python/iMC/msi/io/pngreader.py

Modules/Biophotonics/python/iMC/msi/io/reader.py

Modules/Biophotonics/python/iMC/msi/io/spectrometerreader.py

Modules/Biophotonics/python/iMC/msi/io/tiffreader.py

Modules/Biophotonics/python/iMC/msi/io/tiffringreader.py

Modules/Biophotonics/python/iMC/msi/io/tiffwriter.py

Modules/Biophotonics/python/iMC/msi/io/writer.py

Modules/Biophotonics/python/iMC/msi/msi.py

Modules/Biophotonics/python/iMC/msi/msimanipulations.py

Modules/Biophotonics/python/iMC/msi/normalize.py

Modules/Biophotonics/python/iMC/msi/plot.py

Modules/Biophotonics/python/iMC/msi/test

Modules/Biophotonics/python/iMC/msi/test/init.py

Modules/Biophotonics/python/iMC/msi/test/helpers.py

Modules/Biophotonics/python/iMC/msi/test/test_imgmani.py

Modules/Biophotonics/python/iMC/msi/test/test_msi.py

Modules/Biophotonics/python/iMC/msi/test/test_msimanipulations.py

Modules/Biophotonics/python/iMC/msi/test/test_msireaderwriter.py

Modules/Biophotonics/python/iMC/msi/test/test_normalize.py

Modules/Biophotonics/python/iMC/msi/test/test_nrrdreader.py

Modules/Biophotonics/python/iMC/msi/test/test_nrrdwriter.py

Modules/Biophotonics/python/iMC/msi/test/test_spectrometerreader.py

Modules/Biophotonics/python/iMC/msi/test/test_tiffwriter.py

Modules/Biophotonics/python/iMC/regression

Modules/Biophotonics/python/iMC/regression/init.py

Modules/Biophotonics/python/iMC/regression/domain_adaptation.py

Modules/Biophotonics/python/iMC/regression/estimation.py

Modules/Biophotonics/python/iMC/regression/linear.py

Modules/Biophotonics/python/iMC/regression/preprocessing.py

Modules/Biophotonics/python/iMC/regression/tensorflow_dataset.py

Modules/Biophotonics/python/iMC/regression/tensorflow_estimator.py

Modules/Biophotonics/python/iMC/scripts

Modules/Biophotonics/python/iMC/scripts/basic_checks

Modules/Biophotonics/python/iMC/scripts/basic_checks/init.py

Modules/Biophotonics/python/iMC/scripts/basic_checks/script_evaluate_color_checkerboard.py

Modules/Biophotonics/python/iMC/scripts/commons.py

Modules/Biophotonics/python/iMC/scripts/domain_adaptation

Modules/Biophotonics/python/iMC/scripts/domain_adaptation/init.py

Modules/Biophotonics/python/iMC/scripts/domain_adaptation/domain_adaptation_paths.py

Modules/Biophotonics/python/iMC/scripts/domain_adaptation/script_analyze_da_in_silico.py

Modules/Biophotonics/python/iMC/scripts/ipcai2016

Modules/Biophotonics/python/iMC/scripts/ipcai2016/init.py

Modules/Biophotonics/python/iMC/scripts/ipcai2016/script_analyze_ipcai_in_silico.py

Modules/Biophotonics/python/iMC/scripts/ipcai2016/script_analyze_ipcai_in_vivo_liver.py

Modules/Biophotonics/python/iMC/scripts/ipcai2016/script_analyze_ipcai_in_vivo_small_bowel.py

Modules/Biophotonics/python/iMC/scripts/ipcai2016/script_calculate_spectra.py

Modules/Biophotonics/python/iMC/scripts/ipcai2016/tasks_common.py

Modules/Biophotonics/python/iMC/scripts/ipcai2016/tasks_mc.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/init.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_image_hdf5.h5_list.txt

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_solver.prototxt

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_test.prototxt

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_test_hdf5.h5_list.txt

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_test_image.prototxt

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_train.prototxt

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_train_hdf5.h5_list.txt

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/script_create_hdf5_database.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/script_create_lmdb_database.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/script_test_pretrained_model.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/script_train_caffe.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_tensorflow

Modules/Biophotonics/python/iMC/scripts/ipcai_to_tensorflow/init.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_tensorflow/input_data.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_tensorflow/input_ipcai_data.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_tensorflow/script_train_tensorflow_model.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_theano

Modules/Biophotonics/python/iMC/scripts/ipcai_to_theano/init.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_theano/input_icai_data.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_theano/logistic_sgd.py

Modules/Biophotonics/python/iMC/scripts/ipcai_to_theano/script_train_theano_model.py

Modules/Biophotonics/python/iMC/scripts/spielewiese

Modules/Biophotonics/python/iMC/scripts/spielewiese/init.py

Modules/Biophotonics/python/iMC/scripts/spielewiese/monte_carlo_single_photon.py

Modules/Biophotonics/python/iMC/scripts/spielewiese/spielewiese.py

Modules/Biophotonics/python/iMC/setup.py

Modules/Biophotonics/python/iMC/tox.ini

Modules/Biophotonics/python/iMC/tutorials

Modules/Biophotonics/python/iMC/tutorials/Monte Carlo Spectra Generation - Basic tutorial.ipynb

Modules/Biophotonics/python/iMC/tutorials/README.txt

Modules/Biophotonics/python/iMC_ipcai_jcars_save

Modules/Biophotonics/python/iMC_ipcai_jcars_save/iMC

Modules/Biophotonics/python/iMC_ipcai_jcars_save/iMC/tox.ini

Modules/BiophotonicsHardware

Modules/BiophotonicsHardware/CMakeLists.txt

Modules/BiophotonicsHardware/SpectroCam

Modules/BiophotonicsHardware/SpectroCam/CMakeLists.txt

Modules/BiophotonicsHardware/SpectroCam/files.cmake

Modules/BiophotonicsHardware/SpectroCam/mitkSpectroCamController.cpp

Modules/BiophotonicsHardware/SpectroCam/mitkSpectroCamController.h

Modules/CEST/CMakeLists.txt

Modules/CEST/autoload/IO/CMakeLists.txt

Modules/CEST/autoload/IO/resource/cest_DKFZ.xml

Modules/CameraCalibration/mitkCameraIntrinsics.cpp

Modules/CameraCalibration/mitkCameraIntrinsics.h

Modules/CameraCalibration/mitkEndoDebugFromXmlFile.cpp

Modules/CameraCalibration/mitkEndoDebugToXmlFile.cpp

Modules/CameraCalibration/mitkTransform.cpp

Modules/CameraCalibration/mitkTransform.h

Modules/CameraCalibration/mitkXMLSerializable.cpp

Modules/CameraCalibration/mitkXMLSerializable.h

Modules/Classification/CLLibSVM/test/CMakeLists.txt

Modules/Classification/CLMRUtilities/test/CMakeLists.txt

Modules/Classification/CLMiniApps/CMakeLists.txt

Modules/Classification/CLUtilities/CMakeLists.txt

Modules/Classification/CLUtilities/src/mitkCLResultXMLWriter.cpp

Modules/Classification/CLUtilities/test/CMakeLists.txt

Modules/Classification/CLVigraRandomForest/CMakeLists.txt

Modules/Classification/CLVigraRandomForest/test/CMakeLists.txt

Modules/ContourModel/CMakeLists.txt

Modules/ContourModel/IO/mitkContourModelReader.cpp

Modules/ContourModel/IO/mitkContourModelReader.h

Modules/ContourModel/IO/mitkContourModelSetReader.h

Modules/ContourModel/IO/mitkContourModelSetWriter.cpp

Modules/ContourModel/IO/mitkContourModelWriter.cpp

Modules/ContourModel/IO/mitkContourModelWriter.h

Modules/Core/CMakeLists.txt

Modules/Core/TestingHelper/CMakeLists.txt

Modules/Core/TestingHelper/src/mitkInteractionTestHelper.cpp

Modules/Core/TestingHelper/src/mitkRenderingTestHelper.cpp

Modules/Core/include/mitkGeometryDataReaderService.h

Modules/Core/include/mitkGeometryDataWriterService.h

Modules/Core/include/mitkPlaneOrientationProperty.h

Modules/Core/include/mitkPointSet.h

Modules/Core/src/IO/mitkGeometry3DToXML.cpp

Modules/Core/src/IO/mitkGeometry3DToXML.h

Modules/Core/src/IO/mitkGeometryDataReaderService.cpp

Modules/Core/src/IO/mitkGeometryDataWriterService.cpp

Modules/Core/src/IO/mitkIOUtil.cpp

Modules/Core/src/IO/mitkPointSetReaderService.cpp

Modules/Core/src/IO/mitkPointSetReaderService.h

Modules/Core/src/IO/mitkPointSetWriterService.cpp

Modules/Core/src/IO/mitkPointSetWriterService.h

Modules/Core/src/IO/mitkProportionalTimeGeometryToXML.cpp

Modules/Core/src/IO/mitkProportionalTimeGeometryToXML.h

Modules/Core/src/IO/mitkSurfaceStlIO.cpp

Modules/Core/src/IO/mitkSurfaceStlIO.h

Modules/Core/src/Rendering/mitkPlaneGeometryDataVtkMapper3D.cpp

Modules/Core/src/Rendering/mitkSurfaceVtkMapper3D.cpp

Modules/Core/src/Rendering/vtkMitkLevelWindowFilter.cpp

Modules/Core/test/CMakeLists.txt

Modules/Core/test/files.cmake

Modules/Core/test/mitkGeometry3DTest.cpp

Modules/Core/test/mitkImageGeneratorTest.cpp

Modules/Core/test/mitkImageVtkMapper2DColorTest.cpp

Modules/Core/test/mitkRotatedSlice4DTest.cpp

Modules/Core/test/mitkTinyXMLTest.cpp

Modules/DICOM/CMakeLists.txt

Modules/DICOM/autoload/DICOMImageIO/CMakeLists.txt

Modules/DICOM/include/mitkDICOMReaderConfigurator.h

Modules/DICOM/resource/configurations/3D/classicreader.xml

Modules/DICOM/resource/configurations/3D/imageposition.xml

Modules/DICOM/resource/configurations/3D/imageposition_byacquisition.xml

Modules/DICOM/resource/configurations/3D/imagetime.xml

Modules/DICOM/resource/configurations/3D/instancenumber.xml

Modules/DICOM/resource/configurations/3D/instancenumber_soft.xml

Modules/DICOM/resource/configurations/3D/simpleinstancenumber_soft.xml

Modules/DICOM/resource/configurations/3D/slicelocation.xml

Modules/DICOM/resource/configurations/3DnT/classicreader.xml

Modules/DICOM/resource/configurations/3DnT/imageposition.xml

Modules/DICOM/resource/configurations/3DnT/imageposition_byacquisition.xml

Modules/DICOM/resource/configurations/3DnT/imageposition_bytriggertime.xml

Modules/DICOM/src/mitkDICOMReaderConfigurator.cpp

Modules/DICOMTesting/CMakeLists.txt

Modules/DataTypesExt/CMakeLists.txt

Modules/DataTypesExt/files.cmake

Modules/DataTypesExt/include/mitkMesh.h

Modules/DataTypesExt/include/mitkMeshUtil.h

Modules/DataTypesExt/src/mitkMesh.cpp

Modules/DataTypesExt/test/files.cmake

Modules/DataTypesExt/test/mitkMeshTest.cpp

Modules/IGT/CMakeLists.txt

Modules/IGT/IO/mitkNavigationDataRecorderDeprecated.cpp

Modules/IGT/Testing/mitkOpenIGTLinkTrackingDeviceTest.cpp

Modules/IGTBase/autoload/IO/CMakeLists.txt

Modules/IGTBase/autoload/IO/mitkNavigationDataReaderXML.cpp

Modules/IGTBase/autoload/IO/mitkNavigationDataReaderXML.h

Modules/IGTBase/autoload/IO/mitkNavigationDataSetWriterXML.cpp

Modules/IOExt/CMakeLists.txt

Modules/IOExt/Internal/mitkIOExtObjectFactory.cpp

Modules/ImageExtraction/CMakeLists.txt

Modules/ImageStatistics/CMakeLists.txt

Modules/ImageStatistics/Testing/CMakeLists.txt

Modules/ImageStatistics/mitkExtendedLabelStatisticsImageFilter.hxx

Modules/ImageStatistics/mitkPlanarFigureMaskGenerator.h

Modules/LegacyIO/CMakeLists.txt

Modules/LegacyIO/mitkPointSetReader.cpp

Modules/LegacyIO/mitkPointSetReader.h

Modules/MapperExt/CMakeLists.txt

Modules/MapperExt/files.cmake

Modules/MapperExt/include/mitkMeshMapper2D.h

Modules/MapperExt/include/mitkMeshVtkMapper3D.h

Modules/MapperExt/include/mitkVolumeMapperVtkSmart3D.h

Modules/MapperExt/src/mitkMeshMapper2D.cpp

Modules/MapperExt/src/mitkMeshVtkMapper3D.cpp

Modules/MapperExt/src/mitkUnstructuredGridMapper2D.cpp

Modules/MapperExt/src/mitkVolumeMapperVtkSmart3D.cpp

Modules/MapperExt/src/vtkPointSetSlicer.cxx

Modules/MapperExt/test/CMakeLists.txt

Modules/MapperExt/test/files.cmake

Modules/MatchPointRegistration/CMakeLists.txt

Modules/MatchPointRegistration/autoload/IO/CMakeLists.txt

Modules/MatchPointRegistration/cmdapps/CMakeLists.txt

Modules/MatchPointRegistration/include/itkStitchImageFilter.tpp

Modules/ModelFit/CMakeLists.txt

Modules/ModelFit/cmdapps/CMakeLists.txt

Modules/ModelFit/include/mitkScalarListLookupTablePropertySerializer.h

Modules/ModelFit/src/Common/mitkScalarListLookupTablePropertySerializer.cpp

Modules/ModelFitUI/CMakeLists.txt

Modules/ModuleList.cmake

Modules/Multilabel/CMakeLists.txt

Modules/Multilabel/Testing/mitkLabelSetImageTest.cpp

Modules/Multilabel/Testing/mitkLabelSetTest.cpp

Modules/Multilabel/autoload/IO/CMakeLists.txt

Modules/Multilabel/autoload/IO/mitkLabelSetImageIO.cpp

Modules/Multilabel/mitkLabel.cpp

Modules/Multilabel/mitkLabel.h

Modules/Multilabel/mitkLabelSetIOHelper.cpp

Modules/Multilabel/mitkLabelSetIOHelper.h

Modules/OpenCL/CMakeLists.txt

Modules/OpenCVVideoSupport/CMakeLists.txt

Modules/Persistence/mitkPropertyListsXmlFileReaderAndWriter.cpp

Modules/Persistence/mitkPropertyListsXmlFileReaderAndWriter.h

Modules/Pharmacokinetics/CMakeLists.txt

Modules/Pharmacokinetics/cmdapps/CMakeLists.txt

Modules/Pharmacokinetics/src/Models/mitkTwoStepLinearModel.cpp

Modules/PharmacokineticsUI/CMakeLists.txt

Modules/PhotoacousticsAlgorithms

Modules/PhotoacousticsAlgorithms/CMakeLists.txt

Modules/PhotoacousticsAlgorithms/Documentation

Modules/PhotoacousticsAlgorithms/Documentation/doxygen

Modules/PhotoacousticsAlgorithms/Documentation/doxygen/PAModule.dox

Modules/PhotoacousticsAlgorithms/ITKFilter

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/LICENSE

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/README.rst

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkAnalyticSignalImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkAnalyticSignalImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkBModeImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkBModeImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkCurvilinearArraySpecialCoordinatesImage.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkCurvilinearArraySpecialCoordinatesImage.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexConjugateToRealImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexConjugateToRealImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkRegionFromReferenceImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkRegionFromReferenceImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkSpectra1DImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkSpectra1DImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkSpectra1DSupportWindowImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkSpectra1DSupportWindowImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkSpectra1DSupportWindowToMaskImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkSpectra1DSupportWindowToMaskImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkTimeGainCompensationImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkTimeGainCompensationImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkVnlFFT1DComplexConjugateToRealImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkVnlFFT1DComplexConjugateToRealImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkVnlFFT1DComplexToComplexImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkVnlFFT1DComplexToComplexImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkVnlFFT1DRealToComplexConjugateImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkVnlFFT1DRealToComplexConjugateImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/itkPhotoacousticBModeImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/itkPhotoacousticBModeImageFilter.hxx

Modules/PhotoacousticsAlgorithms/MitkPABeamformingTool

Modules/PhotoacousticsAlgorithms/MitkPABeamformingTool/CMakeLists.txt

Modules/PhotoacousticsAlgorithms/MitkPABeamformingTool/PABeamformingTool.cpp

Modules/PhotoacousticsAlgorithms/MitkPABeamformingTool/files.cmake

Modules/PhotoacousticsAlgorithms/MitkPABeamformingTool/name.options.xml

Modules/PhotoacousticsAlgorithms/MitkPAResampleCropTool

Modules/PhotoacousticsAlgorithms/MitkPAResampleCropTool/CMakeLists.txt

Modules/PhotoacousticsAlgorithms/MitkPAResampleCropTool/PAResampleCropTool.cpp

Modules/PhotoacousticsAlgorithms/MitkPAResampleCropTool/files.cmake

Modules/PhotoacousticsAlgorithms/Resources

Modules/PhotoacousticsAlgorithms/Resources/DAS.cl

Modules/PhotoacousticsAlgorithms/Resources/DMAS.cl

Modules/PhotoacousticsAlgorithms/Resources/DelayCalculation.cl

Modules/PhotoacousticsAlgorithms/Resources/UsedLinesCalculation.cl

Modules/PhotoacousticsAlgorithms/Resources/sDMAS.cl

Modules/PhotoacousticsAlgorithms/files.cmake

Modules/PhotoacousticsAlgorithms/include

Modules/PhotoacousticsAlgorithms/include/OpenCLFilter

Modules/PhotoacousticsAlgorithms/include/OpenCLFilter/mitkPhotoacousticBModeFilter.h

Modules/PhotoacousticsAlgorithms/include/OpenCLFilter/mitkPhotoacousticOCLBeamformingFilter.h

Modules/PhotoacousticsAlgorithms/include/OpenCLFilter/mitkPhotoacousticOCLDelayCalculation.h

Modules/PhotoacousticsAlgorithms/include/OpenCLFilter/mitkPhotoacousticOCLUsedLinesCalculation.h

Modules/PhotoacousticsAlgorithms/include/mitkBandpassFilter.h

Modules/PhotoacousticsAlgorithms/include/mitkBeamformingFilter.h

Modules/PhotoacousticsAlgorithms/include/mitkBeamformingSettings.h

Modules/PhotoacousticsAlgorithms/include/mitkBeamformingUtils.h

Modules/PhotoacousticsAlgorithms/include/mitkCastToFloatImageFilter.h

Modules/PhotoacousticsAlgorithms/include/mitkCropImageFilter.h

Modules/PhotoacousticsAlgorithms/include/mitkImageSliceSelectionFilter.h

Modules/PhotoacousticsAlgorithms/include/mitkPhotoacousticFilterService.h

Modules/PhotoacousticsAlgorithms/include/mitkPhotoacousticMotionCorrectionFilter.h

Modules/PhotoacousticsAlgorithms/source

Modules/PhotoacousticsAlgorithms/source/OpenCLFilter

Modules/PhotoacousticsAlgorithms/source/OpenCLFilter/mitkPhotoacousticBModeFilter.cpp

Modules/PhotoacousticsAlgorithms/source/OpenCLFilter/mitkPhotoacousticOCLBeamformingFilter.cpp

Modules/PhotoacousticsAlgorithms/source/OpenCLFilter/mitkPhotoacousticOCLDelayCalculation.cpp

Modules/PhotoacousticsAlgorithms/source/OpenCLFilter/mitkPhotoacousticOCLUsedLinesCalculation.cpp

Modules/PhotoacousticsAlgorithms/source/filters

Modules/PhotoacousticsAlgorithms/source/filters/mitkBandpassFilter.cpp

Modules/PhotoacousticsAlgorithms/source/filters/mitkBeamformingFilter.cpp

Modules/PhotoacousticsAlgorithms/source/filters/mitkBeamformingSettings.cpp

Modules/PhotoacousticsAlgorithms/source/filters/mitkCastToFloatImageFilter.cpp

Modules/PhotoacousticsAlgorithms/source/filters/mitkCropImageFilter.cpp

Modules/PhotoacousticsAlgorithms/source/filters/mitkImageSliceSelectionFilter.cpp

Modules/PhotoacousticsAlgorithms/source/mitkPhotoacousticMotionCorrectionFilter.cpp

Modules/PhotoacousticsAlgorithms/source/utils

Modules/PhotoacousticsAlgorithms/source/utils/mitkBeamformingUtils.cpp

Modules/PhotoacousticsAlgorithms/source/utils/mitkPhotoacousticFilterService.cpp

Modules/PhotoacousticsAlgorithms/test

Modules/PhotoacousticsAlgorithms/test/CMakeLists.txt

Modules/PhotoacousticsAlgorithms/test/files.cmake

Modules/PhotoacousticsAlgorithms/test/mitkBandpassFilterTest.cpp

Modules/PhotoacousticsAlgorithms/test/mitkBeamformingFilterTest.cpp

Modules/PhotoacousticsAlgorithms/test/mitkCastToFloatImageFilterTest.cpp

Modules/PhotoacousticsAlgorithms/test/mitkCropImageFilterTest.cpp

Modules/PhotoacousticsAlgorithms/test/mitkPAFilterServiceTest.cpp

Modules/PhotoacousticsAlgorithms/test/mitkPhotoacousticMotionCorrectionFilterTest.cpp

Modules/PhotoacousticsHardware

Modules/PhotoacousticsHardware/CMakeLists.txt

Modules/PhotoacousticsHardware/OphirCppWrapper

Modules/PhotoacousticsHardware/OphirCppWrapper/ConsoleExample.cpp

Modules/PhotoacousticsHardware/OphirCppWrapper/OphirPyroWrapper.cpp

Modules/PhotoacousticsHardware/OphirCppWrapper/OphirPyroWrapper.h

Modules/PhotoacousticsHardware/OphirCppWrapper/readme.txt

Modules/PhotoacousticsHardware/Resources

Modules/PhotoacousticsHardware/Resources/FTUNE.dmc

Modules/PhotoacousticsHardware/Resources/GHOME.dmc

Modules/PhotoacousticsHardware/Resources/OpotekPhocusMobile.xml

Modules/PhotoacousticsHardware/Resources/STUNE.dmc

Modules/PhotoacousticsHardware/Resources/configFastTuneOPO.dmc

Modules/PhotoacousticsHardware/Resources/configSlowTuneOPO.dmc

Modules/PhotoacousticsHardware/Resources/executeFastTuneOPO.dmc

Modules/PhotoacousticsHardware/Resources/executeSlowTuneOPO.dmc

Modules/PhotoacousticsHardware/Resources/fastTuneOPO.dmc

Modules/PhotoacousticsHardware/Resources/fastTuneOPO700to900.dmc

Modules/PhotoacousticsHardware/Resources/homeOPO.dmc

Modules/PhotoacousticsHardware/Resources/opotekPhocusMobileDkfz160907.ini

Modules/PhotoacousticsHardware/Resources/test.dmc

Modules/PhotoacousticsHardware/Resources/tuneOPOto700.dmc

Modules/PhotoacousticsHardware/files.cmake

Modules/PhotoacousticsHardware/mitkGalilMotor.cpp

Modules/PhotoacousticsHardware/mitkGalilMotor.h

Modules/PhotoacousticsHardware/mitkOphirPyro.cpp

Modules/PhotoacousticsHardware/mitkOphirPyro.h

Modules/PhotoacousticsHardware/mitkQuantelLaser.cpp

Modules/PhotoacousticsHardware/mitkQuantelLaser.h

Modules/PhotoacousticsLib

Modules/PhotoacousticsLib/CMakeLists.txt

Modules/PhotoacousticsLib/MitkMCxyz

Modules/PhotoacousticsLib/MitkMCxyz/CMakeLists.txt

Modules/PhotoacousticsLib/MitkMCxyz/MitkMCxyz.cpp

Modules/PhotoacousticsLib/MitkMCxyz/files.cmake

Modules/PhotoacousticsLib/MitkPAPhantomGenerator

Modules/PhotoacousticsLib/MitkPAPhantomGenerator/CMakeLists.txt

Modules/PhotoacousticsLib/MitkPAPhantomGenerator/PAPhantomGenerator.cpp

Modules/PhotoacousticsLib/MitkPAPhantomGenerator/files.cmake

Modules/PhotoacousticsLib/MitkSpectralUnmixing

Modules/PhotoacousticsLib/MitkSpectralUnmixing/CMakeLists.txt

Modules/PhotoacousticsLib/MitkSpectralUnmixing/ReadMe.txt

Modules/PhotoacousticsLib/MitkSpectralUnmixing/SpectralUnmixingApp.cpp

Modules/PhotoacousticsLib/MitkSpectralUnmixing/SpectralUnmixingAppTimeEval.cpp

Modules/PhotoacousticsLib/MitkSpectralUnmixing/files.cmake

Modules/PhotoacousticsLib/MitkTissueBatchGenerator

Modules/PhotoacousticsLib/MitkTissueBatchGenerator/CMakeLists.txt

Modules/PhotoacousticsLib/MitkTissueBatchGenerator/TissueBatchGenerator.cpp

Modules/PhotoacousticsLib/MitkTissueBatchGenerator/files.cmake

Modules/PhotoacousticsLib/Resources

Modules/PhotoacousticsLib/Resources/photoacoustics128x128.png

Modules/PhotoacousticsLib/Resources/spectralLIB.dat

Modules/PhotoacousticsLib/files.cmake

Modules/PhotoacousticsLib/include

Modules/PhotoacousticsLib/include/mitkPAComposedVolume.h

Modules/PhotoacousticsLib/include/mitkPAExceptions.h

Modules/PhotoacousticsLib/include/mitkPAFluenceYOffsetPair.h

Modules/PhotoacousticsLib/include/mitkPAIOUtil.h

Modules/PhotoacousticsLib/include/mitkPAInSilicoTissueVolume.h

Modules/PhotoacousticsLib/include/mitkPALightSource.h

Modules/PhotoacousticsLib/include/mitkPALinearSpectralUnmixingFilter.h

Modules/PhotoacousticsLib/include/mitkPAMonteCarloThreadHandler.h

Modules/PhotoacousticsLib/include/mitkPANoiseGenerator.h

Modules/PhotoacousticsLib/include/mitkPAPhantomTissueGenerator.h

Modules/PhotoacousticsLib/include/mitkPAProbe.h

Modules/PhotoacousticsLib/include/mitkPAPropertyCalculator.h

Modules/PhotoacousticsLib/include/mitkPASimulationBatchGenerator.h

Modules/PhotoacousticsLib/include/mitkPASimulationBatchGeneratorParameters.h

Modules/PhotoacousticsLib/include/mitkPASlicedVolumeGenerator.h

Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterBase.h

Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterLagrange.h

Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterSimplex.h

Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingFilterVigra.h

Modules/PhotoacousticsLib/include/mitkPASpectralUnmixingSO2.h

Modules/PhotoacousticsLib/include/mitkPATissueGenerator.h

Modules/PhotoacousticsLib/include/mitkPATissueGeneratorParameters.h

Modules/PhotoacousticsLib/include/mitkPAVector.h

Modules/PhotoacousticsLib/include/mitkPAVessel.h

Modules/PhotoacousticsLib/include/mitkPAVesselDrawer.h

Modules/PhotoacousticsLib/include/mitkPAVesselMeanderStrategy.h

Modules/PhotoacousticsLib/include/mitkPAVesselProperties.h

Modules/PhotoacousticsLib/include/mitkPAVesselTree.h

Modules/PhotoacousticsLib/include/mitkPAVolume.h

Modules/PhotoacousticsLib/include/mitkPAVolumeManipulator.h

Modules/PhotoacousticsLib/src

Modules/PhotoacousticsLib/src/Domain

Modules/PhotoacousticsLib/src/Domain/Vessel

Modules/PhotoacousticsLib/src/Domain/Vessel/mitkPAVessel.cpp

Modules/PhotoacousticsLib/src/Domain/Vessel/mitkPAVesselMeanderStrategy.cpp

Modules/PhotoacousticsLib/src/Domain/Vessel/mitkPAVesselProperties.cpp

Modules/PhotoacousticsLib/src/Domain/Vessel/mitkPAVesselTree.cpp

Modules/PhotoacousticsLib/src/Domain/Volume

Modules/PhotoacousticsLib/src/Domain/Volume/mitkPAComposedVolume.cpp

Modules/PhotoacousticsLib/src/Domain/Volume/mitkPAFluenceYOffsetPair.cpp

Modules/PhotoacousticsLib/src/Domain/Volume/mitkPAInSilicoTissueVolume.cpp

Modules/PhotoacousticsLib/src/Domain/Volume/mitkPAVolume.cpp

Modules/PhotoacousticsLib/src/Generator

Modules/PhotoacousticsLib/src/Generator/mitkPANoiseGenerator.cpp

Modules/PhotoacousticsLib/src/Generator/mitkPAPhantomTissueGenerator.cpp

Modules/PhotoacousticsLib/src/Generator/mitkPASimulationBatchGenerator.cpp

Modules/PhotoacousticsLib/src/Generator/mitkPASimulationBatchGeneratorParameters.cpp

Modules/PhotoacousticsLib/src/Generator/mitkPASlicedVolumeGenerator.cpp

Modules/PhotoacousticsLib/src/Generator/mitkPATissueGenerator.cpp

Modules/PhotoacousticsLib/src/IO

Modules/PhotoacousticsLib/src/IO/mitkPAIOUtil.cpp

Modules/PhotoacousticsLib/src/SUFilter

Modules/PhotoacousticsLib/src/SUFilter/mitkPALinearSpectralUnmixingFilter.cpp

Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterBase.cpp

Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterLagrange.cpp

Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterSimplex.cpp

Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingFilterVigra.cpp

Modules/PhotoacousticsLib/src/SUFilter/mitkPASpectralUnmixingSO2.cpp

Modules/PhotoacousticsLib/src/Utils

Modules/PhotoacousticsLib/src/Utils/ProbeDesign

Modules/PhotoacousticsLib/src/Utils/ProbeDesign/mitkPALightSource.cpp

Modules/PhotoacousticsLib/src/Utils/ProbeDesign/mitkPAProbe.cpp

Modules/PhotoacousticsLib/src/Utils/Thread

Modules/PhotoacousticsLib/src/Utils/Thread/mitkPAMonteCarloThreadHandler.cpp

Modules/PhotoacousticsLib/src/Utils/mitkPAPropertyCalculator.cpp

Modules/PhotoacousticsLib/src/Utils/mitkPATissueGeneratorParameters.cpp

Modules/PhotoacousticsLib/src/Utils/mitkPAVector.cpp

Modules/PhotoacousticsLib/src/Utils/mitkPAVesselDrawer.cpp

Modules/PhotoacousticsLib/src/Utils/mitkPAVolumeManipulator.cpp

Modules/PhotoacousticsLib/test

Modules/PhotoacousticsLib/test/CMakeLists.txt

Modules/PhotoacousticsLib/test/Resources

Modules/PhotoacousticsLib/test/Resources/allsources.xml

Modules/PhotoacousticsLib/test/Resources/circlesource.xml

Modules/PhotoacousticsLib/test/Resources/pointsource.xml

Modules/PhotoacousticsLib/test/Resources/rectanglesource.xml

Modules/PhotoacousticsLib/test/Resources/twopointsources.xml

Modules/PhotoacousticsLib/test/files.cmake

Modules/PhotoacousticsLib/test/mitkMCThreadHandlerTest.cpp

Modules/PhotoacousticsLib/test/mitkMcxyzXmlTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacoustic3dVolumeTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticComposedVolumeTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticIOTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticNoiseGeneratorTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticTissueGeneratorTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticVectorTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticVesselMeanderStrategyTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticVesselTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticVesselTreeTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticVolumeTest.cpp

Modules/PhotoacousticsLib/test/mitkPropertyCalculatorTest.cpp

Modules/PhotoacousticsLib/test/mitkSimulationBatchGeneratorTest.cpp

Modules/PhotoacousticsLib/test/mitkSlicedVolumeGeneratorTest.cpp

Modules/PhotoacousticsLib/test/mitkSpectralUnmixingTest.cpp

Modules/PlanarFigure/CMakeLists.txt

Modules/PlanarFigure/autoload/IO/mitkPlanarFigureIO.cpp

Modules/PlanarFigure/autoload/IO/mitkPlanarFigureIO.h

Modules/PlanarFigure/test/CMakeLists.txt

Modules/PlanarFigure/test/files.cmake

Modules/PythonService/CMakeLists.txt

Modules/QtWidgets/CMakeLists.txt

Modules/QtWidgets/include/QmitkRenderWindow.h

Modules/QtWidgets/include/QmitkRenderWindowMenu.h

Modules/QtWidgets/include/QmitkStdMultiWidget.h

Modules/QtWidgets/src/QmitkMultiWidgetLayoutManager.cpp

Modules/QtWidgets/src/QmitkRenderWindow.cpp

Modules/QtWidgets/src/QmitkRenderWindowMenu.cpp

Modules/QtWidgets/src/QmitkRenderWindowWidget.cpp

Modules/QtWidgets/src/QmitkStdMultiWidget.cpp

Modules/QtWidgetsExt/CMakeLists.txt

Modules/REST/CMakeLists.txt

Modules/REST/test/mitkRESTClientTest.cpp

Modules/Remeshing/CMakeLists.txt

Modules/Remeshing/Testing

Modules/Remeshing/Testing/CMakeLists.txt

Modules/Remeshing/Testing/files.cmake

Modules/Remeshing/Testing/mitkACVDTest.cpp

Modules/Remeshing/files.cmake

Modules/Remeshing/include/mitkRemeshing.h

Modules/Remeshing/mitkACVD.cpp

Modules/Remeshing/mitkACVD.h

Modules/Remeshing/src/mitkRemeshing.cpp

Modules/SceneSerialization/include/mitkSceneIO.h

Modules/SceneSerialization/include/mitkSceneReader.h

Modules/SceneSerialization/src/mitkGeometryDataSerializer.cpp

Modules/SceneSerialization/src/mitkPropertyListDeserializer.cpp

Modules/SceneSerialization/src/mitkPropertyListDeserializerV1.cpp

Modules/SceneSerialization/src/mitkSceneIO.cpp

Modules/SceneSerialization/src/mitkSceneReader.cpp

Modules/SceneSerialization/src/mitkSceneReaderV1.cpp

Modules/SceneSerialization/src/mitkSceneReaderV1.h

Modules/SceneSerialization/test/CMakeLists.txt

Modules/SceneSerialization/test/mitkSceneIOTest.cpp

Modules/SceneSerialization/test/mitkSceneIOTest2.cpp

Modules/SceneSerialization/test/mitkSceneIOTestScenarioProvider.cpp

Modules/SceneSerializationBase/CMakeLists.txt

Modules/SceneSerializationBase/include/mitkBasePropertySerializer.h

Modules/SceneSerializationBase/include/mitkEnumerationPropertySerializer.h

Modules/SceneSerializationBase/include/mitkLookupTablePropertySerializer.h

Modules/SceneSerializationBase/include/mitkPropertyListSerializer.h

Modules/SceneSerializationBase/include/mitkTransferFunctionPropertySerializer.h

Modules/SceneSerializationBase/include/mitkVectorPropertySerializer.h

Modules/SceneSerializationBase/src/mitkAnnotationPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkBasePropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkBoolLookupTablePropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkBoolPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkClippingPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkColorPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkDoublePropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkEnumerationPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkEnumerationSubclassesSerializer.cpp

Modules/SceneSerializationBase/src/mitkFloatLookupTablePropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkFloatPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkGroupTagPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkIntLookupTablePropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkIntPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkLevelWindowPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkLookupTablePropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkPoint3dPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkPoint3iPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkPoint4dPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkPropertyListSerializer.cpp

Modules/SceneSerializationBase/src/mitkStringLookupTablePropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkStringPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkTemporoSpatialStringPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkTransferFunctionPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkUIntPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkUShortPropertySerializer.cpp

Modules/SceneSerializationBase/src/mitkVector3DPropertySerializer.cpp

Modules/SceneSerializationBase/test/mitkPropertySerializationTest.cpp

Modules/SceneSerializationBase/test/mitkVectorPropertySerializerTest.cpp

Modules/Segmentation/CMakeLists.txt

Modules/SurfaceInterpolation/Testing/mitkCreateDistanceImageFromSurfaceFilterTest.cpp

Modules/SurfaceInterpolation/mitkComputeContourSetNormalsFilter.cpp

Modules/SurfaceInterpolation/mitkCreateDistanceImageFromSurfaceFilter.cpp

Modules/SurfaceInterpolation/mitkReduceContourSetFilter.cpp

Modules/SurfaceInterpolation/mitkReduceContourSetFilter.h

Modules/ToFHardware/CMakeLists.txt

Modules/ToFHardware/Testing/CMakeLists.txt

Modules/ToFHardware/mitkAbstractToFDeviceFactory.cpp

Modules/ToFProcessing/Testing/CMakeLists.txt

Modules/TubeGraph/CMakeLists.txt

Modules/TubeGraph/include/mitkTubeGraphIO.h

Modules/TubeGraph/src/IO/mitkTubeGraphIO.cpp

Modules/TubeGraph/src/Rendering/mitkTubeGraphVtkMapper3D.cpp

Modules/US/CMakeLists.txt

Modules/US/USControlInterfaces/mitkUSDiPhASDeviceCustomControls.cpp

Modules/US/USControlInterfaces/mitkUSDiPhASDeviceCustomControls.h

Modules/US/USHardwareDiPhAS

Modules/US/USHardwareDiPhAS/CMakeLists.txt

Modules/US/USHardwareDiPhAS/FranzTissue.nrrd

Modules/US/USHardwareDiPhAS/ITKUltrasound

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkAnalyticSignalImageFilter.h

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkAnalyticSignalImageFilter.hxx

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkBModeImageFilter.h

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkBModeImageFilter.hxx

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.h

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.hxx

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.h

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.hxx

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkRegionFromReferenceImageFilter.h

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkRegionFromReferenceImageFilter.hxx

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkVnlFFT1DComplexConjugateToRealImageFilter.h

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkVnlFFT1DComplexConjugateToRealImageFilter.hxx

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkVnlFFT1DComplexToComplexImageFilter.h

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkVnlFFT1DComplexToComplexImageFilter.hxx

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkVnlFFT1DRealToComplexConjugateImageFilter.h

Modules/US/USHardwareDiPhAS/ITKUltrasound/itkVnlFFT1DRealToComplexConjugateImageFilter.hxx

Modules/US/USHardwareDiPhAS/Resources

Modules/US/USHardwareDiPhAS/Resources/Fluence05.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence06.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence07.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence08.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence09.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence10.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence11.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence12.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence13.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence14.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence15.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence16.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence17.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence18.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence19.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence20.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence21.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence22.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence23.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence24.nrrd

Modules/US/USHardwareDiPhAS/Resources/Fluence25.nrrd

Modules/US/USHardwareDiPhAS/files.cmake

Modules/US/USHardwareDiPhAS/mitkUSDiPhASActivator.cpp

Modules/US/USHardwareDiPhAS/mitkUSDiPhASActivator.h

Modules/US/USHardwareDiPhAS/mitkUSDiPhASBModeImageFilter.h

Modules/US/USHardwareDiPhAS/mitkUSDiPhASBModeImageFilter.hxx

Modules/US/USHardwareDiPhAS/mitkUSDiPhASCustomControls.cpp

Modules/US/USHardwareDiPhAS/mitkUSDiPhASCustomControls.h

Modules/US/USHardwareDiPhAS/mitkUSDiPhASDevice.cpp

Modules/US/USHardwareDiPhAS/mitkUSDiPhASDevice.h

Modules/US/USHardwareDiPhAS/mitkUSDiPhASImageSource.cpp

Modules/US/USHardwareDiPhAS/mitkUSDiPhASImageSource.h

Modules/US/USHardwareDiPhAS/mitkUSDiPhASProbe.cpp

Modules/US/USHardwareDiPhAS/mitkUSDiPhASProbe.h

Modules/US/USHardwareDiPhAS/mitkUSDiPhASProbesControls.cpp

Modules/US/USHardwareDiPhAS/mitkUSDiPhASProbesControls.h

Modules/US/USModel/mitkUSDeviceReaderWriterConstants.cpp

Modules/US/USModel/mitkUSDeviceReaderWriterConstants.h

Modules/US/USModel/mitkUSDeviceReaderXML.cpp

Modules/US/USModel/mitkUSDeviceReaderXML.h

Modules/US/USModel/mitkUSDeviceWriterXML.cpp

Modules/US/USModel/mitkUSDeviceWriterXML.h

Modules/US/USNavigation/Testing/mitkCombinedModalityTest.cpp

Modules/US/USNavigation/mitkAbstractUltrasoundTrackerDevice.cpp

Modules/US/files.cmake

Modules/USUI/Qmitk/QmitkUSControlsCustomDiPhASDeviceWidget.cpp

Modules/USUI/Qmitk/QmitkUSControlsCustomDiPhASDeviceWidget.h

Modules/USUI/Qmitk/QmitkUSControlsCustomDiPhASDeviceWidget.ui

Modules/USUI/files.cmake

Modules/USUI/mitkUSUIActivator.cpp

Plugins/PluginList.cmake

Plugins/org.blueberry.core.runtime/CMakeLists.txt

Plugins/org.blueberry.ui.qt.log/CMakeLists.txt

Plugins/org.blueberry.ui.qt/CMakeLists.txt

Plugins/org.mitk.gui.qt.basicimageprocessing/CMakeLists.txt

Plugins/org.mitk.gui.qt.fit.genericfitting/CMakeLists.txt

Plugins/org.mitk.gui.qt.igt.app.hummelprotocolmeasurements/src/internal/mitkNavigationDataCSVSequentialPlayer.h

Plugins/org.mitk.gui.qt.igt.app.ultrasoundtrackingnavigation/CMakeLists.txt

Plugins/org.mitk.gui.qt.lasercontrol

Plugins/org.mitk.gui.qt.lasercontrol/CMakeLists.txt

Plugins/org.mitk.gui.qt.lasercontrol/files.cmake

Plugins/org.mitk.gui.qt.lasercontrol/manifest_headers.cmake

Plugins/org.mitk.gui.qt.lasercontrol/plugin.xml

Plugins/org.mitk.gui.qt.lasercontrol/resources

Plugins/org.mitk.gui.qt.lasercontrol/resources/iconLaser.xpm

Plugins/org.mitk.gui.qt.lasercontrol/resources/iconLaserControl.svg

Plugins/org.mitk.gui.qt.lasercontrol/src

Plugins/org.mitk.gui.qt.lasercontrol/src/internal

Plugins/org.mitk.gui.qt.lasercontrol/src/internal/QmitkLaserControl.cpp

Plugins/org.mitk.gui.qt.lasercontrol/src/internal/QmitkLaserControl.h

Plugins/org.mitk.gui.qt.lasercontrol/src/internal/QmitkLaserControlControls.ui

Plugins/org.mitk.gui.qt.lasercontrol/src/internal/mitkLaserControlPluginActivator.cpp

Plugins/org.mitk.gui.qt.lasercontrol/src/internal/mitkLaserControlPluginActivator.h

Plugins/org.mitk.gui.qt.moviemaker/CMakeLists.txt

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkMultiLabelSegmentationView.cpp

Plugins/org.mitk.gui.qt.pharmacokinetics.concentration.mri/CMakeLists.txt

Plugins/org.mitk.gui.qt.pharmacokinetics.mri/CMakeLists.txt

Plugins/org.mitk.gui.qt.pharmacokinetics.simulation/CMakeLists.txt

Plugins/org.mitk.gui.qt.photoacoustics.imageprocessing

Plugins/org.mitk.gui.qt.photoacoustics.imageprocessing/CMakeLists.txt

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Plugins/org.mitk.gui.qt.photoacoustics.imageprocessing/src/internal/PAImageProcessingControls.ui

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Plugins/org.mitk.gui.qt.photoacoustics.pausmotioncompensation

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Plugins/org.mitk.gui.qt.photoacoustics.pausmotioncompensation/src/internal/org_mitk_gui_qt_photoacoustics_pausmotioncompensation_Activator.cpp

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Plugins/org.mitk.gui.qt.photoacoustics.pausviewer

Plugins/org.mitk.gui.qt.photoacoustics.pausviewer/CMakeLists.txt

Plugins/org.mitk.gui.qt.photoacoustics.pausviewer/files.cmake

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Plugins/org.mitk.gui.qt.photoacoustics.simulation

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Plugins/org.mitk.gui.qt.photoacoustics.simulation/src/internal/PASimulator.h

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/CMakeLists.txt

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Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/SpectralUnmixing.h

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/SpectralUnmixingControls.ui

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/org_mitk_gui_qt_photoacoustics_spectralunmixing_Activator.cpp

Plugins/org.mitk.gui.qt.photoacoustics.spectralunmixing/src/internal/org_mitk_gui_qt_photoacoustics_spectralunmixing_Activator.h

Plugins/org.mitk.gui.qt.preprocessing.resampling/CMakeLists.txt

Plugins/org.mitk.gui.qt.radiomics/CMakeLists.txt

Plugins/org.mitk.gui.qt.remeshing/CMakeLists.txt

Plugins/org.mitk.gui.qt.remeshing/documentation/UserManual/QmitkRemeshing.dox

Plugins/org.mitk.gui.qt.remeshing/files.cmake

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Plugins/org.mitk.gui.qt.spectrocamrecorder

Plugins/org.mitk.gui.qt.spectrocamrecorder/CMakeLists.txt

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Plugins/org.mitk.gui.qt.spectrocamrecorder/src/internal

Plugins/org.mitk.gui.qt.spectrocamrecorder/src/internal/SpectroCamRecorder.cpp

Plugins/org.mitk.gui.qt.spectrocamrecorder/src/internal/SpectroCamRecorder.h

Plugins/org.mitk.gui.qt.spectrocamrecorder/src/internal/SpectroCamRecorderControls.ui

Plugins/org.mitk.gui.qt.spectrocamrecorder/src/internal/org_mitk_gui_qt_spectrocamrecorder_Activator.cpp

Plugins/org.mitk.gui.qt.spectrocamrecorder/src/internal/org_mitk_gui_qt_spectrocamrecorder_Activator.h

Plugins/org.mitk.gui.qt.tofutil/src/internal/QmitkToFUtilView.cpp

Plugins/org.mitk.gui.qt.xnat/CMakeLists.txt

SuperBuild.cmake