Description

target_libraries.cmake

CMake/

BuildConfigurations/

	DiffusionAll.cmake
	mitkDiffusion.cmake

mitkDiffusion.cmake

CMakeExternals/

ITK-4.11.0.patch

ITK.cmake

Modules/

Chart/

include/

QmitkChartData.h

QmitkChartWidget.h

resource/

Chart.js

src/

QmitkChartWidget.cpp

DICOMReader/

mitkDICOMITKSeriesGDCMReader.h

include/

resource/

configurations/

3D/

simpleinstancenumber_soft.xml

src/

mitkDICOMITKSeriesGDCMReader.cpp

mitkDICOMReaderConfigurator.cpp

test/

mitkDICOMFileReaderTestHelper.h

mitkDICOMSimpleVolumeImportTest.cpp

DICOMReaderServices/

mitkSimpleVolumeDICOMSeriesReaderService.h

include/

src/

mitkDICOMReaderServicesActivator.cpp

mitkDICOMReaderServicesActivator.h

mitkSimpleVolumeDICOMSeriesReaderService.cpp

DiffusionImaging/

Connectomics/

Algorithms/

mitkFreeSurferParcellationTranslator.cpp

mitkFreeSurferParcellationTranslator.h

cmdapps/

NetworkCreation.cpp

DiffusionCore/

Testing/

mitkImageReconstructionTest.cpp

cmdapps/

CopyGeometry.cpp

Dicom2Nrrd.cpp

DiffusionDICOMLoader.cpp

include/

Algorithms/

itkOdfMaximaExtractionFilter.cpp

DiffusionIO/

mitkFiberBundleTckReader.cpp

mitkFiberBundleTrackVisReader.cpp

mitkFiberBundleVtkReader.cpp

FiberTracking/

Algorithms/

GibbsTracking/

mitkFiberBuilder.h

mitkSimpSamp.h

mitkSphereInterpolator.cpp

mitkSphereInterpolator.h

itkFiberCurvatureFilter.h

itkFitFibersToImageFilter.cpp

itkFitFibersToImageFilter.h

itkGibbsTrackingFilter.cpp

itkTractDensityImageFilter.cpp

itkTractDensityImageFilter.h

Fiberfox/

Sequences/

mitkCartesianReadout.h

mitkSingleShotEpi.h

itkFibersFromPlanarFiguresFilter.cpp

itkFibersFromPlanarFiguresFilter.h

itkKspaceImageFilter.h

itkTractsToDWIImageFilter.cpp

itkTractsToDWIImageFilter.h

IODataStructures/

FiberBundle/

mitkFiberfoxParameters.cpp

mitkFiberfoxParameters.h

mitkTractographyForest.cpp

Testing/

mitkFiberGenerationTest.cpp

mitkFiberfoxSignalGenerationTest.cpp

mitkLocalFiberPlausibilityTest.cpp

cmdapps/

FiberProcessing/

FiberDirectionExtraction.cpp

Fiberfox/

Misc/

FileFormatConverter.cpp

PeakExtraction.cpp

Tractography/

GlobalTractography.cpp

RfTraining.cpp

StreamlineTractography.cpp

TractographyEvaluation/

AnchorBasedScoring.cpp

LocalDirectionalFiberPlausibility.cpp

EvaluateLiFE.cpp

ExtractAnchorTracts.cpp

MergeOverlappingTracts.cpp

PeaksAngularError.cpp

TractPlausibility.cpp

TractPlausibilityFit.cpp

TractometerMetrics.cpp

Quantification/

Algorithms/

mitkTractAnalyzer.cpp

cmdapps/

DiffusionIndices.cpp

MultishellMethods.cpp

QballReconstruction.cpp

TensorDerivedMapsExtraction.cpp

TensorReconstruction.cpp

MatchPointRegistration/

algorithms/

mitkMultiModalRigidDefaultRegistrationAlgorithm.h

mitkMAPRegistrationWrapper.h

O4: MITK Reviewer Group III

MatchPointRegistrationUI/

Qmitk/

QmitkRegistrationJob.h

Plugins/

org.blueberry.ui.qt/

src/

actions/

berryMenuManager.cpp

QmitkFreeSurferParcellationHandler.cpp

org.mitk.gui.qt.diffusionimaging.connectomics/

src/

QmitkFreeSurferParcellationHandler.h

org.mitk.gui.qt.diffusionimaging.fiberfox/

src/

internal/

QmitkFiberfoxView.cpp

QmitkFiberfoxView.h

org.mitk.gui.qt.diffusionimaging.fiberprocessing/

documentation/

UserManual/

QmitkFiberProcessingViewUserManual.dox

src/

internal/

QmitkFiberProcessingView.cpp

QmitkFiberProcessingView.h

QmitkFiberProcessingViewControls.ui

org.mitk.gui.qt.diffusionimaging.ivim/

org.mitk.gui.qt.diffusionimaging.odfpeaks/

org.mitk.gui.qt.diffusionimaging.partialvolume/

org.mitk.gui.qt.diffusionimaging.preprocessing/

QmitkPreprocessingView.cpp

src/

internal/

org.mitk.gui.qt.diffusionimaging.registration/

QmitkDiffusionImagingRegistration.dox

documentation/

UserManual/

QmitkSimpleRigidRegistration.dox

QmitkDiffusionRegistrationView.h

plugin.xml

src/

internal/

QmitkDwiRegistrationPerspective.cpp

	QmitkDwiRegistrationPerspective.h
	mitkPluginActivator.cpp

QmitkSimpleRigidRegistrationView.cpp

QmitkSimpleRigidRegistrationView.h

QmitkSimpleRigidRegistrationViewControls.ui

mitkPluginActivator.cpp

org.mitk.gui.qt.remeshing/

documentation/

UserManual/

QmitkRemeshing.dox

QmitkRemeshing_CylinderBad.png

QmitkRemeshing_CylinderGood.png

QmitkRemeshing_Gradation10Percent.png

QmitkRemeshing_NoBoundaryFixing10Percent.png

QmitkRemeshing_OriginalMesh.png

QmitkRemeshing_RemeshingView.png

QmitkRemeshing_Subsampling20percent.png

QmitkRemeshing_cylinder.png

src/

internal/

QmitkRemeshingView.cpp

QmitkRemeshingView.h

QmitkRemeshingViewControls.ui

rMITK9db309b58348

Applications/Diffusion/CMakeLists.txt

Applications/Diffusion/target_libraries.cmake

CMake/BuildConfigurations/DiffusionAll.cmake

CMake/BuildConfigurations/mitkDiffusion.cmake

CMakeExternals/ITK-4.11.0.patch

CMakeExternals/ITK.cmake

Modules/Chart/include/QmitkChartData.h

Modules/Chart/include/QmitkChartWidget.h

Modules/Chart/resource/Chart.js

Modules/Chart/src/QmitkChartWidget.cpp

Modules/DICOMReader/files.cmake

Modules/DICOMReader/include/mitkDICOMITKSeriesGDCMReader.h

Modules/DICOMReader/resource/configurations/3D/simpleinstancenumber_soft.xml

Modules/DICOMReader/src/mitkDICOMITKSeriesGDCMReader.cpp

Modules/DICOMReader/src/mitkDICOMReaderConfigurator.cpp

Modules/DICOMReader/test/CMakeLists.txt

Modules/DICOMReader/test/files.cmake

Modules/DICOMReader/test/mitkDICOMFileReaderTestHelper.h

Modules/DICOMReader/test/mitkDICOMSimpleVolumeImportTest.cpp

Modules/DICOMReaderServices/files.cmake

Modules/DICOMReaderServices/include/mitkSimpleVolumeDICOMSeriesReaderService.h

Modules/DICOMReaderServices/src/mitkDICOMReaderServicesActivator.cpp

Modules/DICOMReaderServices/src/mitkDICOMReaderServicesActivator.h

Modules/DICOMReaderServices/src/mitkSimpleVolumeDICOMSeriesReaderService.cpp

Modules/DiffusionImaging/Connectomics/Algorithms/mitkFreeSurferParcellationTranslator.cpp

Modules/DiffusionImaging/Connectomics/Algorithms/mitkFreeSurferParcellationTranslator.h

Modules/DiffusionImaging/Connectomics/cmdapps/NetworkCreation.cpp

Modules/DiffusionImaging/DiffusionCore/Testing/mitkImageReconstructionTest.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/CopyGeometry.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/Dicom2Nrrd.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/DiffusionDICOMLoader.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/DwiDenoising.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/ExportShImage.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/ImageResampler.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/Registration.cpp

Modules/DiffusionImaging/DiffusionCore/include/Algorithms/itkOdfMaximaExtractionFilter.cpp

Modules/DiffusionImaging/DiffusionIO/mitkFiberBundleTckReader.cpp

Modules/DiffusionImaging/DiffusionIO/mitkFiberBundleTrackVisReader.cpp

Modules/DiffusionImaging/DiffusionIO/mitkFiberBundleVtkReader.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/GibbsTracking/mitkFiberBuilder.h

Modules/DiffusionImaging/FiberTracking/Algorithms/GibbsTracking/mitkSimpSamp.h

Modules/DiffusionImaging/FiberTracking/Algorithms/GibbsTracking/mitkSphereInterpolator.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/GibbsTracking/mitkSphereInterpolator.h

Modules/DiffusionImaging/FiberTracking/Algorithms/itkFiberCurvatureFilter.h

Modules/DiffusionImaging/FiberTracking/Algorithms/itkFitFibersToImageFilter.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkFitFibersToImageFilter.h

Modules/DiffusionImaging/FiberTracking/Algorithms/itkGibbsTrackingFilter.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractDensityImageFilter.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkTractDensityImageFilter.h

Modules/DiffusionImaging/FiberTracking/Fiberfox/Sequences/mitkCartesianReadout.h

Modules/DiffusionImaging/FiberTracking/Fiberfox/Sequences/mitkSingleShotEpi.h

Modules/DiffusionImaging/FiberTracking/Fiberfox/itkFibersFromPlanarFiguresFilter.cpp

Modules/DiffusionImaging/FiberTracking/Fiberfox/itkFibersFromPlanarFiguresFilter.h

Modules/DiffusionImaging/FiberTracking/Fiberfox/itkKspaceImageFilter.h

Modules/DiffusionImaging/FiberTracking/Fiberfox/itkTractsToDWIImageFilter.cpp

Modules/DiffusionImaging/FiberTracking/Fiberfox/itkTractsToDWIImageFilter.h

Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundle/mitkFiberBundle.cpp

Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundle/mitkFiberBundle.h

Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundle/mitkTrackvis.cpp

Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundle/mitkTrackvis.h

Modules/DiffusionImaging/FiberTracking/IODataStructures/mitkFiberfoxParameters.cpp

Modules/DiffusionImaging/FiberTracking/IODataStructures/mitkFiberfoxParameters.h

Modules/DiffusionImaging/FiberTracking/IODataStructures/mitkTractographyForest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkFiberGenerationTest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkFiberfoxSignalGenerationTest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkLocalFiberPlausibilityTest.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberDirectionExtraction.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberExtraction.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberProcessing.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FitFibersToImage.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/Fiberfox.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/FileFormatConverter.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/PeakExtraction.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/GlobalTractography.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/RfTraining.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/StreamlineTractography.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/AnchorBasedScoring.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/EvaluateLiFE.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/ExtractAnchorTracts.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/LocalDirectionalFiberPlausibility.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/MergeOverlappingTracts.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/PeaksAngularError.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractPlausibility.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractPlausibilityFit.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractometerMetrics.cpp

Modules/DiffusionImaging/Quantification/Algorithms/mitkTractAnalyzer.cpp

Modules/DiffusionImaging/Quantification/cmdapps/DiffusionIndices.cpp

Modules/DiffusionImaging/Quantification/cmdapps/MultishellMethods.cpp

Modules/DiffusionImaging/Quantification/cmdapps/QballReconstruction.cpp

Modules/DiffusionImaging/Quantification/cmdapps/TensorDerivedMapsExtraction.cpp

Modules/DiffusionImaging/Quantification/cmdapps/TensorReconstruction.cpp

Modules/MatchPointRegistration/algorithms/mitkMultiModalRigidDefaultRegistrationAlgorithm.h

Modules/MatchPointRegistration/mitkMAPRegistrationWrapper.h

Modules/MatchPointRegistrationUI/Qmitk/QmitkRegistrationJob.h

Plugins/org.blueberry.ui.qt/src/actions/berryMenuManager.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/src/QmitkFreeSurferParcellationHandler.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/src/QmitkFreeSurferParcellationHandler.h

Plugins/org.mitk.gui.qt.diffusionimaging.fiberfox/src/internal/QmitkFiberfoxView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberfox/src/internal/QmitkFiberfoxView.h

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/documentation/UserManual/QmitkFiberProcessingViewUserManual.dox

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingView.h

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging.ivim/manifest_headers.cmake

Plugins/org.mitk.gui.qt.diffusionimaging.odfpeaks/manifest_headers.cmake

Plugins/org.mitk.gui.qt.diffusionimaging.partialvolume/manifest_headers.cmake

Plugins/org.mitk.gui.qt.diffusionimaging.preprocessing/manifest_headers.cmake

Plugins/org.mitk.gui.qt.diffusionimaging.preprocessing/src/internal/QmitkPreprocessingView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.registration/CMakeLists.txt

Plugins/org.mitk.gui.qt.diffusionimaging.registration/documentation/UserManual/QmitkDiffusionImagingRegistration.dox

Plugins/org.mitk.gui.qt.diffusionimaging.registration/documentation/UserManual/QmitkSimpleRigidRegistration.dox

Plugins/org.mitk.gui.qt.diffusionimaging.registration/files.cmake

Plugins/org.mitk.gui.qt.diffusionimaging.registration/manifest_headers.cmake

Plugins/org.mitk.gui.qt.diffusionimaging.registration/plugin.xml

Plugins/org.mitk.gui.qt.diffusionimaging.registration/src/internal/QmitkDiffusionRegistrationView.h

Plugins/org.mitk.gui.qt.diffusionimaging.registration/src/internal/QmitkDwiRegistrationPerspective.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.registration/src/internal/QmitkDwiRegistrationPerspective.h

Plugins/org.mitk.gui.qt.diffusionimaging.registration/src/internal/QmitkSimpleRigidRegistrationView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.registration/src/internal/QmitkSimpleRigidRegistrationView.h

Plugins/org.mitk.gui.qt.diffusionimaging.registration/src/internal/QmitkSimpleRigidRegistrationViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging.registration/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.remeshing/documentation/UserManual/QmitkRemeshing.dox

Plugins/org.mitk.gui.qt.remeshing/documentation/UserManual/QmitkRemeshing_CylinderBad.png

Plugins/org.mitk.gui.qt.remeshing/documentation/UserManual/QmitkRemeshing_CylinderGood.png

Plugins/org.mitk.gui.qt.remeshing/documentation/UserManual/QmitkRemeshing_Gradation10Percent.png

Plugins/org.mitk.gui.qt.remeshing/documentation/UserManual/QmitkRemeshing_NoBoundaryFixing10Percent.png

Plugins/org.mitk.gui.qt.remeshing/documentation/UserManual/QmitkRemeshing_OriginalMesh.png

Plugins/org.mitk.gui.qt.remeshing/documentation/UserManual/QmitkRemeshing_RemeshingView.png

Plugins/org.mitk.gui.qt.remeshing/documentation/UserManual/QmitkRemeshing_Subsampling20percent.png

Plugins/org.mitk.gui.qt.remeshing/documentation/UserManual/QmitkRemeshing_cylinder.png

Plugins/org.mitk.gui.qt.remeshing/src/internal/QmitkRemeshingView.cpp

Plugins/org.mitk.gui.qt.remeshing/src/internal/QmitkRemeshingView.h

Plugins/org.mitk.gui.qt.remeshing/src/internal/QmitkRemeshingViewControls.ui