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Replace all *.pic and *.pic.gz files in MITK by *.nrrd
Closed, ResolvedPublic

Description

Especially our testing data in ../MITK-build/CMakeExternals/Source/MITK-Data contains lots of old data sets in the *.pic or *.pic.gz format which should be replaced by *.nrrd.

We should also make sure that our documentation does not contain unnecessary pic-files. One should use a "git grep" to double that everything unnecessary was removed. In addition, our test protocols for the releases should be adapted to use the new format.

Since we officially replaced the pic-format a long time ago I put this bug to "major" severity and "high" importance. Very easy to do.

Event Timeline

Changing target milestone to upcoming release

Small circular dependency:

  • the IpPic support module: IpPicSupport -> mitkPicFileIOTest.cpp needs .pic.gz data in the MITK-Data to run

    --> possible solution: use IOUtil to read in a .nrrd, save as temporary .pic.gz and use this as input for the test

    --> drop the IpPicSupport module tests

    --> drop the IpPic support completely [ problems with backward compatibility ]

This bug could not be fixed within the 2013-06 release and has medium severity. Setting target milestone to unspecified.

This bug could not be fixed within the release 2013-06. Setting its target milestone to unspecified

hering lowered the priority of this task from High to Low.
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Hi there! 🙂

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Best wishes,
The MITK devs

kislinsk removed kislinsk as the assignee of this task.May 26 2020, 12:05 PM
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kislinsk lowered the priority of this task from Low to Wishlist.

I am currently removing the last remains of ipPic from MITK (not yet as a dependency of ipFunc, though), and will also remove or convert the last .pic and .pic.gz files from MITK-Data