Page MenuHomePhabricator

[Segmentation Utilities] Various issues
Open, HighPublic

Description

Test data

US4DCyl with:

  • Two static overlapping segmentations: static_A and static_B
  • Two dynamic overlapping segmentations in t=1: dynamic_1_A and dynamic_1_B
  • One dynamic segmentation in t=2 that theoretically would overlap with dynamic_1_A, if it would be in t=1: dynamic_2_B

Issues

  • Boolean Operations
    • Works with dynamic images but result is static image with infinite bounds. Input of the operation is the current time step
  • Contour to Image
    • Works at least the the contour test data in MITK-Data but still produces legacy binary image
  • Image Masking
    • Works with dynamic images but does not produce expected masked image most of the time (dynamic_2_B works, dynamic_1_[A,B] produces binary image.
    • Does not work with dynamic image and static segmentation even though they have the same time bounds in principle (GUI says "Different image sizes cannot be masked")
  • Surface to Image
    • Surface selection widget also shows helper objects
    • Does not work with dynamic image and static segmentation even though they have the same time bounds in principle (GUI says "Different image sizes cannot be masked")

Summary

View needs a major overhaul. Same for the Multilabel version. Most issues are time-related issues. We may be able to fix the masking output for the upcoming release?

Event Timeline

kislinsk triaged this task as Normal priority.Feb 1 2021, 9:08 AM
kislinsk created this task.
kislinsk updated the task description. (Show Details)
kislinsk updated the task description. (Show Details)
kislinsk edited projects, added MITK, Next Milestone; removed MITK (v2021.02).
kislinsk removed a parent task: T28000: MITK v2021.02.
kislinsk raised the priority of this task from Normal to High.Apr 8 2021, 7:08 PM
kislinsk edited projects, added MITK (v2021.10); removed Next Milestone, MITK.