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Aug 2 2016

vanbruggen added projects to T10455: Segmentation Fault when Starting Extapp or Coreapp: MITK, Bugzilla.
Aug 2 2016, 9:50 AM · Bugzilla, MITK
vanbruggen added projects to T10385: Create separate view for skeletonization and projection: MITK, Bugzilla.
Aug 2 2016, 9:50 AM · Bugzilla, MITK
vanbruggen added a comment to T10385: Create separate view for skeletonization and projection.

[2f10d6]: Merge branch 'bug-10385-skeletonizeView'

Aug 2 2016, 9:50 AM · Bugzilla, MITK
vanbruggen added a comment to T10300: indeterministic brain mask estimation.

weird

Aug 2 2016, 9:50 AM · Bugzilla, MITK
vanbruggen added projects to T10256: clean up tbss public: MITK, Bugzilla.
Aug 2 2016, 9:50 AM · Bugzilla, MITK
vanbruggen added projects to T10187: image slider for .tbss images: MITK, Bugzilla.
Aug 2 2016, 9:50 AM · Bugzilla, MITK
vanbruggen added a comment to T10148: MITK crashes while importing DICOM data.

[2d634c]: Merge branch 'bug-10148-bagiDicom'

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T10148: MITK crashes while importing DICOM data.

is there

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T10148: MITK crashes while importing DICOM data.

I will look at this bug soon

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T10148: MITK crashes while importing DICOM data.

Yes, Martin imported all datasets and will give me the ones that caused the errors so I can search for the bug.

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T10148: MITK crashes while importing DICOM data.

[c9bb01]: Merge branch 'bug-10148-dicomBagi'

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added projects to T10030: PV analysis: MITK, Bugzilla.
Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added projects to T10021: merge tbss changes from release bug into master: MITK, Bugzilla.
Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T10021: merge tbss changes from release bug into master.

[444d8f]: Merge branch 'bug-10021-merge'

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9970: Crash in DI-Reconstruction.

Did you try a QBall estimation from the dti image or the dwi image?

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9970: Crash in DI-Reconstruction.

this should not be done with ivim data. Need to catch this

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9968: Crash in ODF Details Widget.

I am not sure. Jan did something about it yesterday, but the bug is still open and assigned to me.

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9967: Processbar stops at 66% and stays visible all the time.

[704537]: Merge branch 'bug-9967-progressBar'

Merged commits:

2012-01-25 15:28:41 Thomas Van Bruggen [8d52e4]
removed adding of one step to the progress bar. Now there are exactly as much Adds as there are progress steps

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9968: Crash in ODF Details Widget.

The index is calculated incorrectly when another image is loaded

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9967: Processbar stops at 66% and stays visible all the time.

Also this progress bar does not make much sense, since the dicom import doesn't run in a separate thread. Therefore it isn't updated regularly.

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9947: Bram: Angaben, welche Art von Daten benötigt.

ein Textfeld mit Kommentar finde ich nicht so schön. Dafür gibt es das user manual. Große daten finde ich auch nicht so gut. Dann in der Tat lieber dwi verfügbar stellen und selber qballs machen lassen.

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added projects to T9940: deactivate teem: MITK, Bugzilla.
Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9931: Dicom Import test files are missing.

added testdata

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9931: Dicom Import test files are missing.

Also I don't see the Extract B0 and Estimate binary brain mask in this Dicom View

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9934: TBSS Testablauf missing test data folder.

e130-daten/temp/MITK-DI-Demodaten
also modified the test

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9931: Dicom Import test files are missing.

Now it says test 1

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9934: TBSS Testablauf missing test data folder.

take a look at e130-daten

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added projects to T9912: cast to 4d itk: MITK, Bugzilla.
Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added projects to T9903: testing: MITK, Bugzilla.
Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9866: Hide Teem Tensor Reconstruction.

(In reply to comment #3)

I think we should deactivate the option in the app. This is too close to
release now. lets open a new bug.

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9866: Hide Teem Tensor Reconstruction.

I tried a bit. when no tend can be found the int is 35** (not sure exactly). With tend i receive other failures with the int = 512

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9866: Hide Teem Tensor Reconstruction.

how can we check if the executable exists?

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9866: Hide Teem Tensor Reconstruction.

hiding it might be the best solution so shortly before release.

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9845: QmitkPlotWidget error on Dashboard.

[d09995]: Merge branch 'bug-9845-plotWidgetError'

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added projects to T9837: PV analysis crashes wenn planar figure is gone: MITK, Bugzilla.
Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added projects to T9845: QmitkPlotWidget error on Dashboard: MITK, Bugzilla.
Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9837: PV analysis crashes wenn planar figure is gone.

[39b2c0]: Merge branch 'bug-9837-fixPvCrash'

Aug 2 2016, 9:49 AM · Bugzilla, MITK
vanbruggen added a comment to T9826: IVIM crashes when removing planar figure.

also selecting the other colours under the curve causes a crash

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9826: IVIM crashes when removing planar figure.

This bug actually considers the PV analysis tool

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9829: Planar figures are not rendered correctly..

Seems correct to me

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added projects to T9826: IVIM crashes when removing planar figure: MITK, Bugzilla.
Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9823: Option regularized IVIM shows no plot.

Since it will only be disabled for the release, I Think it is best to only remove this option from the interface and only merge it in the release branch.

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added projects to T9823: Option regularized IVIM shows no plot: MITK, Bugzilla.
Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9809: Customize about dialogue.

The team list should be modified. I don't know whether we want wo list everyone from the MBI and MINT teams, but at least each of us should be named.

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9808: Activate F1 help for DI App.

When I press F1 nothing happens

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9781: Provide user documentation for all perspectives of the DI-App.

code docu is not relevant for the release.
Blocks 9596 can be removed when all user interfrace elements have clear tooltips and a user manual.

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9743: data type for tbss gradient images.

[64eebf]: Merge branch 'bug-9743-gradientImage'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9743: data type for tbss gradient images.

[8eb91f]: Merge branch 'bug-9743-gradientImage'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added projects to T9743: data type for tbss gradient images: MITK, Bugzilla.
Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9743: data type for tbss gradient images.

Not relevant any more. To keep things simple this will be calculated wenn it is needed, with no need for saving it

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[27347b]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[8e9571]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[532448]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added projects to T9731: Tbss open source: MITK, Bugzilla.
Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9728: Code review for diffusion app.

Wat is the status on this one and the two bugs that depend on it?

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[7dd686]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[4d0cb5]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[b662ee]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[920fc6]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[fd8240]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[12e089]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[f84038]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[c3bc4b]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[920bc6]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[7375b0]: Merge branch 'bug-9731-tbssOpenSource'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[85b712]: Merge branch 'bug-9731-tbssOpenSource'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[8d192a]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9731: Tbss open source.

[3441ca]: Merge branch 'bug-9731-fix'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9716: Improve DI error messages.

Should it still blog T9596 even though there are no open issues? I will remove the blockade until such an issue pops up.

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9617: Wrong Welcome-screen on second run of the ExtApp.

Problem still exists

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9584: Dicom import.

They crash could be yet another bug

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added projects to T9585: save dwi directly to disk: MITK, Bugzilla.
Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added projects to T9584: Dicom import: MITK, Bugzilla.
Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9336: PV analysis can not work with mask images with pixeltype short.

[0d3add]: Merge branch 'bug-9336-pvShortMask'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added projects to T9336: PV analysis can not work with mask images with pixeltype short: MITK, Bugzilla.
Aug 2 2016, 9:48 AM · Bugzilla, MITK
vanbruggen added a comment to T9201: Dicom import fails.

[1d9c31]: Merge branch 'bug-9201-diffDicom'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9201: Dicom import fails.

Data to reproduce can be found in /mnt/E130-Projekte/NeuroDiffusion/BAGI

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added projects to T9201: Dicom import fails: MITK, Bugzilla.
Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9152: Publish PV analysis view open source.

Can't draw Rois anymore

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9152: Publish PV analysis view open source.

[5dc64a]: Merge branch 'bug-9152-PVext'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9009: tensor and qball reconstruction do not work.

reopened for some cleaning

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9009: tensor and qball reconstruction do not work.

stuff was in itk code so will not go in mitk branch anyway

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9009: tensor and qball reconstruction do not work.

on linux:

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9009: tensor and qball reconstruction do not work.

dynamic cast did not work with gcc compilers < 4.4. Therefore dynamic casts of dwi to tensor images did not work properly. Some recent changes with regard to T9250 and 9248 resolved this problem.

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added projects to T9009: tensor and qball reconstruction do not work: MITK, Bugzilla.
Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9009: tensor and qball reconstruction do not work.

Does not appear on every pc. Iggy and I had this problem. Jan did not.

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[7d2e8b]: Merge branch 'bug-9000-tbssInteraction'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[784fb3]: Merge branch 'bug-9000-tbssImage'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[32fff1]: Merge branch 'bug-9000-tbssImage'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[fb2b38]: Merge branch 'bug-9000-tbssInteraction'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added projects to T9000: Tbss Image type: MITK, Bugzilla.
Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[aa9c72]: Merge branch 'bug-9000-fixTbssImage'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[398862]: Merge branch 'bug-9000-tbssImage'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[dea1fa]: Merge branch 'bug-9000-fix'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[e9c980]: Merge branch 'bug-9000-fix'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[e44442]: Merge branch 'bug-9000-fix'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[cda7e6]: Merge branch 'bug-9000-fix'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[bb04ef]: Merge branch 'bug-9000-fix'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T9000: Tbss Image type.

[a54d80]: Merge branch 'bug-9000-plotWidget'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
vanbruggen added a comment to T8858: ExtApp crashes if planar figure is used without image.

Tried to fix it with exception handling, but the error occurs somewhere deep in QT code, so this does not work. Implemented a much more simple solution. It needs a Fiber Bundle to work so no the buttons for these planar figures are enabled and disabled depending on whether there are fiber bundles in the current selection or not.

Aug 2 2016, 9:46 AM · Bugzilla, MITK