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Methods and open-source toolkit for analyzing and visualizing challenge results

Recent Activity

Tue, Jul 27

reinkea added a member for challengeR: aekavur.
Tue, Jul 27, 2:09 PM

May 7 2021

eisenman created T28484: [external] Improve documentation on significance ranking.
May 7 2021, 4:45 PM · challengeR

May 6 2021

eisenman closed T28482: challangeR Patch v1.0.2 as Resolved.
May 6 2021, 7:16 PM · challengeR
eisenman moved T28482: challangeR Patch v1.0.2 from In Progress to Done on the challengeR board.
May 6 2021, 7:15 PM · challengeR
eisenman closed T28465: Wrong numer of algorithms shown in report summary as Resolved.
May 6 2021, 7:15 PM · challengeR
eisenman closed T28453: [external] Error when all metric values are the same as Resolved.
May 6 2021, 7:15 PM · challengeR
eisenman moved T28482: challangeR Patch v1.0.2 from Backlog to In Progress on the challengeR board.
May 6 2021, 6:42 PM · challengeR
eisenman renamed T28453: [external] Error when all metric values are the same from bug when all metric values are the same to [external] Error when all metric values are the same.
May 6 2021, 6:41 PM · challengeR
eisenman triaged T28482: challangeR Patch v1.0.2 as High priority.
May 6 2021, 6:40 PM · challengeR

May 4 2021

wiesenfa moved T28453: [external] Error when all metric values are the same from In Progress to Done on the challengeR board.
May 4 2021, 5:45 PM · challengeR
wiesenfa lowered the priority of T28477: feature request: subset of top performing algorithms according to consensus from Normal to Wishlist.
May 4 2021, 5:44 PM · challengeR
wiesenfa created T28477: feature request: subset of top performing algorithms according to consensus.
May 4 2021, 5:43 PM · challengeR

Apr 26 2021

eisenman moved T28465: Wrong numer of algorithms shown in report summary from In Progress to Done on the challengeR board.
Apr 26 2021, 12:07 PM · challengeR
eisenman moved T28465: Wrong numer of algorithms shown in report summary from Backlog to In Progress on the challengeR board.
Apr 26 2021, 11:50 AM · challengeR
eisenman triaged T28465: Wrong numer of algorithms shown in report summary as High priority.
Apr 26 2021, 11:50 AM · challengeR
wiesenfa added a comment to T28453: [external] Error when all metric values are the same.

@eisenman the change in develop branch has not been uploaded to GitHub, is this not automatically synchronized?. So the user who reported the bug still has the same problem. It would be good to merge into master as well

Apr 26 2021, 9:32 AM · challengeR
wiesenfa moved T28453: [external] Error when all metric values are the same from Done to In Progress on the challengeR board.
Apr 26 2021, 9:29 AM · challengeR

Apr 23 2021

wiesenfa added a comment to T28453: [external] Error when all metric values are the same.

now test case in test-report.R

Apr 23 2021, 1:01 PM · challengeR
eisenman added a comment to T28453: [external] Error when all metric values are the same.

Do you have a minimum example to reproduce this? Would be great to have that in the test checklists as well.

Apr 23 2021, 11:40 AM · challengeR

Apr 22 2021

wiesenfa added a comment to T28453: [external] Error when all metric values are the same.

very simple fix in rankingHeatmap.challenge
@eisenman can this be merged into master branch?

Apr 22 2021, 10:30 PM · challengeR
wiesenfa moved T28453: [external] Error when all metric values are the same from In Progress to Done on the challengeR board.
Apr 22 2021, 10:28 PM · challengeR
wiesenfa moved T28453: [external] Error when all metric values are the same from Backlog to In Progress on the challengeR board.
Apr 22 2021, 10:27 PM · challengeR

Apr 19 2021

wiesenfa created T28453: [external] Error when all metric values are the same.
Apr 19 2021, 9:26 AM · challengeR

Mar 3 2021

eisenman added a comment to T28346: Package version mismatch during upgrade.

In this case we solved it by upgrading BiocManager. Probably the previous version did not know about the later version of "graph".

Mar 3 2021, 8:17 PM · challengeR
wiesenfa added a comment to T28346: Package version mismatch during upgrade.

graph had only been used for networks, I guess version 1.62 is sufficient

Mar 3 2021, 7:45 PM · challengeR
eisenman added a comment to T28346: Package version mismatch during upgrade.

The package "graph" was moved from CRAN to Bioconductor:
https://cran.r-project.org/web/packages/graph/index.html

Mar 3 2021, 2:10 PM · challengeR
eisenman triaged T28346: Package version mismatch during upgrade as High priority.
Mar 3 2021, 2:06 PM · challengeR

Jan 28 2021

eisenman closed T28227: challangeR Patch v1.0.1 as Resolved.
Jan 28 2021, 1:04 PM · challengeR
eisenman closed T28201: Avoid blank pages in report as Resolved.
Jan 28 2021, 1:04 PM · challengeR
eisenman closed T28194: drop restriction at least 3 algorithms required for bootstrapping as Resolved.
Jan 28 2021, 1:04 PM · challengeR
eisenman closed T28193: bug in stabilityByAlgorithm.bootstrap.list as Resolved.
Jan 28 2021, 1:04 PM · challengeR
eisenman closed T28202: Error in stabilityByAlgorithm if only one case is used as Resolved.
Jan 28 2021, 1:03 PM · challengeR
eisenman closed T28210: update citation of paper to scientific reports as Resolved.
Jan 28 2021, 1:03 PM · challengeR
eisenman moved T28227: challangeR Patch v1.0.1 from In Progress to Done on the challengeR board.
Jan 28 2021, 11:22 AM · challengeR

Jan 27 2021

eisenman added a comment to T28194: drop restriction at least 3 algorithms required for bootstrapping.

This issue will be fixed in v1.0.1.

Jan 27 2021, 6:49 PM · challengeR
eisenman moved T28227: challangeR Patch v1.0.1 from Backlog to In Progress on the challengeR board.
Jan 27 2021, 6:29 PM · challengeR
eisenman triaged T28227: challangeR Patch v1.0.1 as High priority.
Jan 27 2021, 6:29 PM · challengeR
eisenman moved T28210: update citation of paper to scientific reports from In Progress to Done on the challengeR board.
Jan 27 2021, 6:22 PM · challengeR
eisenman added a comment to T28210: update citation of paper to scientific reports.

An update is also required in report.Rmd, visualizations.Rmd and CITATION.

Jan 27 2021, 5:33 PM · challengeR
eisenman claimed T28210: update citation of paper to scientific reports.

This issue will be fixed in v1.0.1.

Jan 27 2021, 5:25 PM · challengeR
eisenman moved T28202: Error in stabilityByAlgorithm if only one case is used from In Progress to Done on the challengeR board.

This issue will be fixed in v1.0.1.

Jan 27 2021, 5:22 PM · challengeR
eisenman added a comment to T28202: Error in stabilityByAlgorithm if only one case is used.

Seems fine!

Jan 27 2021, 5:21 PM · challengeR
eisenman moved T28193: bug in stabilityByAlgorithm.bootstrap.list from In Progress to Done on the challengeR board.

This issue will be fixed in v1.0.1.

Jan 27 2021, 3:37 PM · challengeR
wiesenfa created T28210: update citation of paper to scientific reports.
Jan 27 2021, 12:25 PM · challengeR
wiesenfa added a comment to T28202: Error in stabilityByAlgorithm if only one case is used.

additional test in test-blobPlotStabilityByAlgorithm for the case "one task out of 3 tasks contains >1 test cases". in this case bootstrap() gives result for this remaining task and stability() only produces plot with this task. @eisenman could you please check and close?

Jan 27 2021, 11:49 AM · challengeR
wiesenfa added a comment to T28193: bug in stabilityByAlgorithm.bootstrap.list.

@eisenman yes, should be sufficient
only one case per task covered in bootstrap() now see T28202

Jan 27 2021, 11:38 AM · challengeR
wiesenfa added a comment to T28202: Error in stabilityByAlgorithm if only one case is used.

bootstrap() now gives error if all tasks only contain 1 test case and a message if some tasks contain only 1 test case (tasks with 1 test case are excluded from bootstrapping)
test-bootstrap.R contains tests. @eisenman could you please check test

Jan 27 2021, 11:32 AM · challengeR
wiesenfa claimed T28202: Error in stabilityByAlgorithm if only one case is used.
Jan 27 2021, 10:08 AM · challengeR
wiesenfa moved T28202: Error in stabilityByAlgorithm if only one case is used from Backlog to In Progress on the challengeR board.
Jan 27 2021, 10:08 AM · challengeR

Jan 26 2021

eisenman added a comment to T28193: bug in stabilityByAlgorithm.bootstrap.list.

The unit tests can be found here: feature/T28193-UnitTestsMoreTasksThanAlgorithms

Jan 26 2021, 8:46 PM · challengeR