Methods and open-source toolkit for analyzing and visualizing challenge results
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Tue, Jul 27
Tue, Jul 27
May 7 2021
May 7 2021
May 6 2021
May 6 2021
eisenman renamed T28453: [external] Error when all metric values are the same from bug when all metric values are the same to [external] Error when all metric values are the same.
May 4 2021
May 4 2021
wiesenfa moved T28453: [external] Error when all metric values are the same from In Progress to Done on the challengeR board.
wiesenfa lowered the priority of T28477: feature request: subset of top performing algorithms according to consensus from Normal to Wishlist.
Apr 26 2021
Apr 26 2021
eisenman moved T28465: Wrong numer of algorithms shown in report summary from In Progress to Done on the challengeR board.
eisenman moved T28465: Wrong numer of algorithms shown in report summary from Backlog to In Progress on the challengeR board.
wiesenfa added a comment to T28453: [external] Error when all metric values are the same.
@eisenman the change in develop branch has not been uploaded to GitHub, is this not automatically synchronized?. So the user who reported the bug still has the same problem. It would be good to merge into master as well
wiesenfa moved T28453: [external] Error when all metric values are the same from Done to In Progress on the challengeR board.
Apr 23 2021
Apr 23 2021
wiesenfa added a comment to T28453: [external] Error when all metric values are the same.
now test case in test-report.R
eisenman added a comment to T28453: [external] Error when all metric values are the same.
Do you have a minimum example to reproduce this? Would be great to have that in the test checklists as well.
Apr 22 2021
Apr 22 2021
wiesenfa added a comment to T28453: [external] Error when all metric values are the same.
very simple fix in rankingHeatmap.challenge
@eisenman can this be merged into master branch?
wiesenfa moved T28453: [external] Error when all metric values are the same from In Progress to Done on the challengeR board.
wiesenfa moved T28453: [external] Error when all metric values are the same from Backlog to In Progress on the challengeR board.
Apr 19 2021
Apr 19 2021
Mar 3 2021
Mar 3 2021
eisenman added a comment to T28346: Package version mismatch during upgrade.
In this case we solved it by upgrading BiocManager. Probably the previous version did not know about the later version of "graph".
wiesenfa added a comment to T28346: Package version mismatch during upgrade.
graph had only been used for networks, I guess version 1.62 is sufficient
eisenman added a comment to T28346: Package version mismatch during upgrade.
The package "graph" was moved from CRAN to Bioconductor:
https://cran.r-project.org/web/packages/graph/index.html
Jan 28 2021
Jan 28 2021
eisenman closed T28194: drop restriction at least 3 algorithms required for bootstrapping as Resolved.
Jan 27 2021
Jan 27 2021
eisenman added a comment to T28194: drop restriction at least 3 algorithms required for bootstrapping.
This issue will be fixed in v1.0.1.
eisenman moved T28210: update citation of paper to scientific reports from In Progress to Done on the challengeR board.
eisenman added a comment to T28210: update citation of paper to scientific reports.
An update is also required in report.Rmd, visualizations.Rmd and CITATION.
This issue will be fixed in v1.0.1.
eisenman moved T28202: Error in stabilityByAlgorithm if only one case is used from In Progress to Done on the challengeR board.
This issue will be fixed in v1.0.1.
eisenman added a comment to T28202: Error in stabilityByAlgorithm if only one case is used.
Seems fine!
eisenman moved T28193: bug in stabilityByAlgorithm.bootstrap.list from In Progress to Done on the challengeR board.
This issue will be fixed in v1.0.1.
wiesenfa added a comment to T28202: Error in stabilityByAlgorithm if only one case is used.
additional test in test-blobPlotStabilityByAlgorithm for the case "one task out of 3 tasks contains >1 test cases". in this case bootstrap() gives result for this remaining task and stability() only produces plot with this task. @eisenman could you please check and close?
wiesenfa added a comment to T28193: bug in stabilityByAlgorithm.bootstrap.list.
wiesenfa added a comment to T28202: Error in stabilityByAlgorithm if only one case is used.
bootstrap() now gives error if all tasks only contain 1 test case and a message if some tasks contain only 1 test case (tasks with 1 test case are excluded from bootstrapping)
test-bootstrap.R contains tests. @eisenman could you please check test
wiesenfa moved T28202: Error in stabilityByAlgorithm if only one case is used from Backlog to In Progress on the challengeR board.
Jan 26 2021
Jan 26 2021
eisenman added a comment to T28193: bug in stabilityByAlgorithm.bootstrap.list.
The unit tests can be found here: feature/T28193-UnitTestsMoreTasksThanAlgorithms