Description

icons/

	mitkFlowBench.rc
	mitkWorkbench.rc

mitkWorkbench.rc

PluginGenerator/

ProjectTemplate/

CMakeExternals/

MITK.cmake

CMake/

BuildConfigurations/

Default.cmake

mitkNavigationModules.cmake

PackageDepends/

MITK_ACVD_Config.cmake

MITK_OpenMesh_Config.cmake

FlowBenchSegmentation.cmake

Whitelists/

mitkFunctionGetLibrarySearchPaths.cmake

CMakeExternals/

	ACVD.cmake
	OpenMesh.cmake

ExternalProjectList.cmake

OpenMesh.cmake

MITKPluginManualsList.dox

Documentation/

Doxygen/

2-UserManual/

3-DeveloperManual/

Concepts/

Concepts.dox

MITKSegmentationTaskLists.md

HowTos/

InteractionHowTo.dox

Starting/

GettingToKnow/

Tutorial/

Step10.dox

SettingUpMITK/

ThirdPartyLibs.dox

doxygen.conf.in

Examples/

QtFreeRender/

QtFreeRender.cpp

Modules/

BoundingShape/

include/

mitkBoundingShapeInteractor.h

src/

Interactions/

mitkBoundingShapeInteractor.cpp

Core/

include/

mitkAbstractFileReader.h

mitkDataNode.h

mitkDisplayInteractor.h

mitkEventStateMachine.h

mitkIFileReader.h

mitkIOUtil.h

mitkSlicesCoordinator.h

DisplayConfigMITKLimited.xml

resource/

Interactions/

DisplayConfigPACSBase.xml

mitkSlicesCoordinator.cpp

src/

Controllers/

mitkAbstractFileReader.cpp

IO/

mitkIOUtil.cpp

mitkDisplayInteractor.cpp

Interactions/

	Core/	include/
	QtWidgets/	include/

	mitkFileSystem.h
	QmitkStyleManager.h

DICOM/

TODOs.txt

mitkDICOMTagsOfInterestService.h

autoload/

DICOMImageIO/

include/

mitkClassicDICOMSeriesReader.h

include/

mitkDICOMDCMTKTagScanner.h

mitkDICOMDatasetAccess.h

mitkDICOMDatasetSorter.h

mitkDICOMEnums.h

mitkDICOMFileReader.h

mitkDICOMGDCMTagScanner.h

mitkDICOMIOHelper.h

mitkDICOMITKSeriesGDCMReader.h

mitkDICOMImageBlockDescriptor.h

mitkDICOMReaderConfigurator.h

mitkDICOMSortByTag.h

mitkDICOMSortCriterion.h

mitkDICOMTagPath.h

mitkDICOMTagScanner.h

mitkEquiDistantBlocksSorter.h

mitkGantryTiltInformation.h

mitkIDICOMTagsOfInterest.h

mitkITKDICOMSeriesReaderHelper.h

mitkITKDICOMSeriesReaderHelper.txx

resource/

configurations/

3D/

imagetime.xml

3DnT/

imageposition.xml

mitkDicomSeriesReader.cpp

src/

legacy/

mitkDicomSeriesReader.h

mitkDicomSeriesReader.txx

mitkBaseDICOMReaderService.cpp

mitkClassicDICOMSeriesReader.cpp

mitkDICOMGDCMTagScanner.cpp

mitkDICOMIOHelper.cpp

mitkDICOMImageBlockDescriptor.cpp

mitkDICOMSortByTag.cpp

mitkDICOMTagBasedSorter.cpp

mitkDICOMTagsOfInterestAddHelper.cpp

mitkEquiDistantBlocksSorter.cpp

mitkThreeDnTDICOMSeriesReader.cpp

mitkDICOMITKSeriesGDCMReaderBasicsTest.cpp

test/

DICOMTesting/

src/

mitkTestDICOMLoading.cpp

mitkDICOMSegmentationIO.cpp

Multilabel/

autoload/

DICOMSegIO/

IO/

mitkMultilabelActivator.cpp

mitkMultilabelIOMimeTypes.cpp

mitkMultilabelIOMimeTypes.h

mitkSegmentationTaskListIO.cpp

mitkSegmentationTaskListIO.h

mitkSegmentationTaskListSerializer.cpp

mitkSegmentationTaskListSerializer.h

mitkSegmentationTaskList.cpp

mitkSegmentationTaskList.h

mitkSegmentationTaskListMacros.h

QtWidgets/

include/

QmitkMxNMultiWidget.h

QmitkStyleManager.h

QmitkAbstractMultiWidget.cpp

src/

QmitkDataStorageTableModel.cpp

QmitkDataStorageTreeModel.cpp

QmitkMxNMultiWidget.cpp

QmitkStyleManager.cpp

mitkRTDoseReaderService.cpp

RT/

autoload/

DICOMRTIO/

mitkRTPlanReaderService.cpp

mitkRTStructureSetReaderService.cpp

Remeshing/

include/

mitkRemeshing.h

src/

mitkRemeshing.cpp

SceneSerialization/

src/

mitkSceneReaderV1.cpp

mitkSceneReaderV1.h

mitkSegmentationHelper.cpp

Segmentation/

Algorithms/

mitkSegmentationInteractor.cpp

Interactions/

mitkSegmentationInteractor.h

mitkTool.cpp

mitkTool.h

	Segmentation/	Algorithms/
	QtWidgets/	include/

	mitkSegmentationHelper.h
	QmitkStyleManager.h

QmitkStaticDynamicSegmentationDialog.cpp

SegmentationUI/

Qmitk/

QmitkStaticDynamicSegmentationDialog.h

QmitknnUNetFolderParser.cpp

QmitknnUNetFolderParser.h

QmitknnUNetGPU.cpp

QmitknnUNetGPU.h

QmitknnUNetToolGUI.cpp

QmitknnUNetToolGUI.h

QmitkAbstractMultiWidgetEditor.cpp

Plugins/

org.mitk.gui.qt.common/

src/

QmitkAbstractMultiWidgetEditor.h

org.mitk.gui.qt.ext/

src/

internal/

QmitkCommonExtPlugin.cpp

org.mitk.gui.qt.flow.segmentation/

resources/

SegmentationTaskList.qrc

SegmentationTaskListIcon.svg

QmitkSegmentationFlowControlView.cpp

src/

internal/

QmitkSegmentationFlowControlView.h

QmitkSegmentationFlowControlView.ui

QmitkSegmentationTaskListWidget.cpp

QmitkSegmentationTaskListWidget.h

QmitkSegmentationTaskListWidget.ui

org_mitk_gui_qt_flow_segmentation_Activator.cpp

QmitkFlowApplicationPlugin.cpp

org.mitk.gui.qt.flowapplication/

src/

internal/

QmitkFlowApplicationPlugin.h

QmitkImageCropperView.cpp

org.mitk.gui.qt.imagecropper/

src/

internal/

org.mitk.gui.qt.measurementtoolbox/

src/

internal/

QmitkMeasurementView.cpp

QmitkMeasurementView.h

QmitkMxNMultiWidgetEditor.cpp

org.mitk.gui.qt.mxnmultiwidgeteditor/

src/

QmitkMxNMultiWidgetEditor.h

org.mitk.gui.qt.remeshing/

src/

internal/

QmitkRemeshingView.cpp

QmitkRemeshingView.h

QmitkRemeshingViewControls.ui

target_libraries.cmake

QmitkNewSegmentationDialog.cpp

org.mitk.gui.qt.segmentation/

src/

QmitkNewSegmentationDialog.ui

Wrapping/

Common/

mitk_swig_common.i

mitk_swig_macros.i

Python/

LegacyPackaging.cmake

MITK.i

PackageUtility/

imagefiles/

install-gcc.sh

rMITKafcf045c0f0d

Applications/FlowBench/CMakeLists.txt

Applications/FlowBench/icons/mitkFlowBench.rc

Applications/FlowBench/icons/mitkWorkbench.rc

Applications/PluginGenerator/ProjectTemplate/CMakeExternals/MITK.cmake

CMake/BuildConfigurations/Default.cmake

CMake/BuildConfigurations/mitkNavigationModules.cmake

CMake/PackageDepends/MITK_ACVD_Config.cmake

CMake/PackageDepends/MITK_OpenMesh_Config.cmake

CMake/Whitelists/FlowBenchSegmentation.cmake

CMake/mitkFunctionGetLibrarySearchPaths.cmake

CMakeExternals/ACVD.cmake

CMakeExternals/ExternalProjectList.cmake

CMakeExternals/OpenMesh.cmake

Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox

Documentation/Doxygen/3-DeveloperManual/Concepts/Concepts.dox

Documentation/Doxygen/3-DeveloperManual/Concepts/MITKSegmentationTaskLists.md

Documentation/Doxygen/3-DeveloperManual/HowTos/InteractionHowTo.dox

Documentation/Doxygen/3-DeveloperManual/Starting/GettingToKnow/Tutorial/Step10.dox

Documentation/Doxygen/3-DeveloperManual/Starting/SettingUpMITK/ThirdPartyLibs.dox

Documentation/doxygen.conf.in

Examples/QtFreeRender/QtFreeRender.cpp

Modules/BoundingShape/include/mitkBoundingShapeInteractor.h

Modules/BoundingShape/src/Interactions/mitkBoundingShapeInteractor.cpp

Modules/Core/CMakeLists.txt

Modules/Core/files.cmake

Modules/Core/include/mitkAbstractFileReader.h

Modules/Core/include/mitkDataNode.h

Modules/Core/include/mitkDisplayInteractor.h

Modules/Core/include/mitkEventStateMachine.h

Modules/Core/include/mitkFileSystem.h

Modules/Core/include/mitkIFileReader.h

Modules/Core/include/mitkIOUtil.h

Modules/Core/include/mitkSlicesCoordinator.h

Modules/Core/resource/Interactions/DisplayConfigMITKLimited.xml

Modules/Core/resource/Interactions/DisplayConfigPACSBase.xml

Modules/Core/src/Controllers/mitkSlicesCoordinator.cpp

Modules/Core/src/IO/mitkAbstractFileReader.cpp

Modules/Core/src/IO/mitkIOUtil.cpp

Modules/Core/src/Interactions/mitkDisplayInteractor.cpp

Modules/DICOM/TODOs.txt

Modules/DICOM/autoload/DICOMImageIO/include/mitkDICOMTagsOfInterestService.h

Modules/DICOM/include/mitkClassicDICOMSeriesReader.h

Modules/DICOM/include/mitkDICOMDCMTKTagScanner.h

Modules/DICOM/include/mitkDICOMDatasetAccess.h

Modules/DICOM/include/mitkDICOMDatasetSorter.h

Modules/DICOM/include/mitkDICOMEnums.h

Modules/DICOM/include/mitkDICOMFileReader.h

Modules/DICOM/include/mitkDICOMGDCMTagScanner.h

Modules/DICOM/include/mitkDICOMIOHelper.h

Modules/DICOM/include/mitkDICOMITKSeriesGDCMReader.h

Modules/DICOM/include/mitkDICOMImageBlockDescriptor.h

Modules/DICOM/include/mitkDICOMReaderConfigurator.h

Modules/DICOM/include/mitkDICOMSortByTag.h

Modules/DICOM/include/mitkDICOMSortCriterion.h

Modules/DICOM/include/mitkDICOMTagPath.h

Modules/DICOM/include/mitkDICOMTagScanner.h

Modules/DICOM/include/mitkEquiDistantBlocksSorter.h

Modules/DICOM/include/mitkGantryTiltInformation.h

Modules/DICOM/include/mitkIDICOMTagsOfInterest.h

Modules/DICOM/include/mitkITKDICOMSeriesReaderHelper.h

Modules/DICOM/include/mitkITKDICOMSeriesReaderHelper.txx

Modules/DICOM/resource/configurations/3D/imagetime.xml

Modules/DICOM/resource/configurations/3DnT/imageposition.xml

Modules/DICOM/src/legacy/mitkDicomSeriesReader.cpp

Modules/DICOM/src/legacy/mitkDicomSeriesReader.h

Modules/DICOM/src/legacy/mitkDicomSeriesReader.txx

Modules/DICOM/src/mitkBaseDICOMReaderService.cpp

Modules/DICOM/src/mitkClassicDICOMSeriesReader.cpp

Modules/DICOM/src/mitkDICOMGDCMTagScanner.cpp

Modules/DICOM/src/mitkDICOMIOHelper.cpp

Modules/DICOM/src/mitkDICOMImageBlockDescriptor.cpp

Modules/DICOM/src/mitkDICOMSortByTag.cpp

Modules/DICOM/src/mitkDICOMTagBasedSorter.cpp

Modules/DICOM/src/mitkDICOMTagsOfInterestAddHelper.cpp

Modules/DICOM/src/mitkEquiDistantBlocksSorter.cpp

Modules/DICOM/src/mitkThreeDnTDICOMSeriesReader.cpp

Modules/DICOM/test/mitkDICOMITKSeriesGDCMReaderBasicsTest.cpp

Modules/DICOMTesting/src/mitkTestDICOMLoading.cpp

Modules/Multilabel/autoload/DICOMSegIO/mitkDICOMSegmentationIO.cpp

Modules/Multilabel/autoload/IO/CMakeLists.txt

Modules/Multilabel/autoload/IO/files.cmake

Modules/Multilabel/autoload/IO/mitkMultilabelActivator.cpp

Modules/Multilabel/autoload/IO/mitkMultilabelIOMimeTypes.cpp

Modules/Multilabel/autoload/IO/mitkMultilabelIOMimeTypes.h

Modules/Multilabel/autoload/IO/mitkSegmentationTaskListIO.cpp

Modules/Multilabel/autoload/IO/mitkSegmentationTaskListIO.h

Modules/Multilabel/autoload/IO/mitkSegmentationTaskListSerializer.cpp

Modules/Multilabel/autoload/IO/mitkSegmentationTaskListSerializer.h

Modules/Multilabel/files.cmake

Modules/Multilabel/mitkSegmentationTaskList.cpp

Modules/Multilabel/mitkSegmentationTaskList.h

Modules/Multilabel/mitkSegmentationTaskListMacros.h

Modules/QtWidgets/include/QmitkMxNMultiWidget.h

Modules/QtWidgets/include/QmitkStyleManager.h

Modules/QtWidgets/src/QmitkAbstractMultiWidget.cpp

Modules/QtWidgets/src/QmitkDataStorageTableModel.cpp

Modules/QtWidgets/src/QmitkDataStorageTreeModel.cpp

Modules/QtWidgets/src/QmitkMxNMultiWidget.cpp

Modules/QtWidgets/src/QmitkStyleManager.cpp

Modules/RT/autoload/DICOMRTIO/mitkRTDoseReaderService.cpp

Modules/RT/autoload/DICOMRTIO/mitkRTPlanReaderService.cpp

Modules/RT/autoload/DICOMRTIO/mitkRTStructureSetReaderService.cpp

Modules/Remeshing/CMakeLists.txt

Modules/Remeshing/include/mitkRemeshing.h

Modules/Remeshing/src/mitkRemeshing.cpp

Modules/SceneSerialization/src/mitkSceneReaderV1.cpp

Modules/SceneSerialization/src/mitkSceneReaderV1.h

Modules/Segmentation/Algorithms/mitkSegmentationHelper.cpp

Modules/Segmentation/Algorithms/mitkSegmentationHelper.h

Modules/Segmentation/Interactions/mitkSegmentationInteractor.cpp

Modules/Segmentation/Interactions/mitkSegmentationInteractor.h

Modules/Segmentation/Interactions/mitkTool.cpp

Modules/Segmentation/Interactions/mitkTool.h

Modules/Segmentation/files.cmake

Modules/SegmentationUI/Qmitk/QmitkStaticDynamicSegmentationDialog.cpp

Modules/SegmentationUI/Qmitk/QmitkStaticDynamicSegmentationDialog.h

Modules/SegmentationUI/Qmitk/QmitknnUNetFolderParser.cpp

Modules/SegmentationUI/Qmitk/QmitknnUNetFolderParser.h

Modules/SegmentationUI/Qmitk/QmitknnUNetGPU.cpp

Modules/SegmentationUI/Qmitk/QmitknnUNetGPU.h

Modules/SegmentationUI/Qmitk/QmitknnUNetToolGUI.cpp

Modules/SegmentationUI/Qmitk/QmitknnUNetToolGUI.h

Modules/SegmentationUI/files.cmake

Plugins/org.mitk.gui.qt.common/src/QmitkAbstractMultiWidgetEditor.cpp

Plugins/org.mitk.gui.qt.common/src/QmitkAbstractMultiWidgetEditor.h

Plugins/org.mitk.gui.qt.ext/src/internal/QmitkCommonExtPlugin.cpp

Plugins/org.mitk.gui.qt.flow.segmentation/files.cmake

Plugins/org.mitk.gui.qt.flow.segmentation/resources/SegmentationTaskList.qrc

Plugins/org.mitk.gui.qt.flow.segmentation/resources/SegmentationTaskListIcon.svg

Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.cpp

Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.h

Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.ui

Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.cpp

Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.h

Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.ui

Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/org_mitk_gui_qt_flow_segmentation_Activator.cpp

Plugins/org.mitk.gui.qt.flowapplication/src/internal/QmitkFlowApplicationPlugin.cpp

Plugins/org.mitk.gui.qt.flowapplication/src/internal/QmitkFlowApplicationPlugin.h

Plugins/org.mitk.gui.qt.imagecropper/src/internal/QmitkImageCropperView.cpp

Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkMeasurementView.cpp

Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkMeasurementView.h

Plugins/org.mitk.gui.qt.mxnmultiwidgeteditor/src/QmitkMxNMultiWidgetEditor.cpp

Plugins/org.mitk.gui.qt.mxnmultiwidgeteditor/src/QmitkMxNMultiWidgetEditor.h

Plugins/org.mitk.gui.qt.remeshing/CMakeLists.txt

Plugins/org.mitk.gui.qt.remeshing/src/internal/QmitkRemeshingView.cpp

Plugins/org.mitk.gui.qt.remeshing/src/internal/QmitkRemeshingView.h

Plugins/org.mitk.gui.qt.remeshing/src/internal/QmitkRemeshingViewControls.ui

Plugins/org.mitk.gui.qt.remeshing/target_libraries.cmake

Plugins/org.mitk.gui.qt.segmentation/src/QmitkNewSegmentationDialog.cpp

Plugins/org.mitk.gui.qt.segmentation/src/QmitkNewSegmentationDialog.ui

Wrapping/Common/mitk_swig_common.i

Wrapping/Common/mitk_swig_macros.i

Wrapping/Python/CMakeLists.txt

Wrapping/Python/LegacyPackaging.cmake

Wrapping/Python/MITK.i

Wrapping/Python/PackageUtility/imagefiles/imagefiles/install-gcc.sh

Wrapping/Python/PackageUtility/imagefiles/install-gcc.sh