Diffusion Hyppopy (Observed Repository) 7e25cd15aafb

Merge branch 'master' into dev
7e25cd15aafb
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Merge branch 'master' into dev

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Authored on Apr 7 2021, 3:56 PM

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rOBSHYPPOPY254adacd6164: Merge branch 'feature/T28333-MPI_blackbox_auto_wrapping'
rOBSHYPPOPY3247b012e532: Release 0.5.0.1

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• kleina committed rOBSHYPPOPY7e25cd15aafb: Merge branch 'master' into dev (authored by • kleina).Apr 7 2021, 3:56 PM

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This commit merges a very large number of changes. Only the first 50 are shown.

254adacd6164 Merge branch 'feature/T28333-MPI_blackbox_auto_wrapping'
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7e2b0026d800 Extracted mpi4py into an optional_requirements.txt for now,
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3636699c3c1e Removed unneeded dependency to MPIBlackboxFunction
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8fcdb9d07f73 Made MPI an extra in the requirement specification because
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7961f8745789 Fixed usage of potentially wrong MPI communicator (was still hard coded)
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75cdf9ddd63f Fixed T28333
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38bf9e41f9e5 Merge branch 'T26755_mpi4hyppopy'
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63a9cb87d47e Merge branch 'T26755_mpi4hyppopy'
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1a7a0544bf5e Merge branch 'T26755_mpi4hyppopy' of https://github.com/MIC-DKFZ/Hyppopy into…
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fd1e3a1ce194 Fexed tests. Parameter "normed" was updated to "density" in scipy.stats.norm
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9e0e45582629 removed loss_function_call, which is depricated and was no longer used anyway.
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2ffecdc1e877 If maximum iterations is reached, self.best contains Wrapped results. We now…
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1358b14d22f9 Merge branch 'T26755_mpi4hyppopy' of https://github.com/MIC-DKFZ/Hyppopy into…
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1b19f1049760 Handle errors if workers. If error occurs, we send np.nan to the master.
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ea489f818b8b Differentiate between "not implemented" and "not started via MPI".
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7b1d6048c077 Code cleanup to improve readability.
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98e6c5c254d9 Introduced DynamicPSOSelver and mpiplayground_dynpso
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e0041a35d427 updated mpiplayground
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01baaa6c1ac3 MPISolverWrapper can now handle loss functions with (x,y)
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4cdaf7216741 Removed old debug output.
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6ed53988605b Handling of constraint errors.
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dacd1e912814 Updated errormessage
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9f7ffc20ff13 fixed iterator
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eeb302b6b1fe Added CandidateDescriptorWrapper and updated mapping function. Optunity now…
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47e2639dcaee uncommented customized pmap
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c5ef45302a73 loss_function_batch works for now, but only receives one candidate. Have to…
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24436615c9c6 Fixed typo.
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9fe2f8e9cfe3 added some outputs.
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8bd563379684 added new line at end of file.
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6721f6cf30c6 add custom pmap function for optunitysolver. Overwrite loss_function_batch
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ed27cde65b31 Switch to SolverPool in mpiplayground. Try optunity.
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8a356f884293 replaced MPI.COMM_WORLD with self._mpi_comm
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230451b1ac37 Add mpi support for RandomsearchSolver
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828762fd0573 added mpi_comm to documentation (2)
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31e9f9b0e858 added mpi_comm to documentation
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ba147fa770ad Add possibility to pass comm to MPI classes.
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4dca75afb591 make sure to call loss_func_cand_preprocess and loss_func_postprocess correctly…
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b3b1fc6637cb removed prototyping code...
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818af7645bd2 testing out different loss_functions in MPI context.
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ceeb9ccaa9a8 Implemented loss_func_cand_preprocess and loss_func_postprocess for…
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bfa1d6355844 Try both, calling blackbox_function with kwargs and by directly passing…
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b19055317a61 MPIBlackboxFunction now inherits from BlackBoxFunction and just adds the…
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7d5a08925371 See T26868: Don't need this anymore.
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5c224fb8945b See T26868. Introduced loss_func_cand_preprocess and loss_func_postprocess.
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a153ed802dc6 Fix for T26870
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18d366ef41ad code cleanup...
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9f38c4e495a4 Added print in worker to see if it is actually doing things...
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ff89adc44f40 Updated readme (License and project description).
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f73700a66405 Actually using the introduces loss_function_call_batch.
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5c477913132f Introduced loss_function_call_batch. Each solver lib might need some special…
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Changes (26)

Path

Size

README.md

doc/

developer_guide.rst

hyppopy/

BlackboxFunction.py

CandidateDescriptor.py

FunctionSimulator.py

MPIBlackboxFunction.py

solvers/

QuasiRandomsearchSolver.py

RandomsearchSolver.py

tests/

test_hyperoptsolver.py

test_hyppopysolver.py

test_randomsearchsolver.py

test_solverpool.py

	mpiplayground.py/
	examples/


	tutorial_simple.py

mpiplayground_dynpso.py

optional_requirements.txt

setup.py

rOBSHYPPOPY7e25cd15aafb

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README.md

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doc/developer_guide.rst

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hyppopy/BlackboxFunction.py

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hyppopy/CandidateDescriptor.py

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hyppopy/FunctionSimulator.py

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hyppopy/MPIBlackboxFunction.py

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hyppopy/SolverPool.py

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hyppopy/VisdomViewer.py

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hyppopy/globals.py

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hyppopy/solvers/DynamicPSOSolver.py

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hyppopy/solvers/GridsearchSolver.py

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hyppopy/solvers/HyperoptSolver.py

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hyppopy/solvers/HyppopySolver.py

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hyppopy/solvers/MPISolverWrapper.py

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hyppopy/solvers/OptunaSolver.py

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hyppopy/solvers/OptunitySolver.py

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hyppopy/solvers/QuasiRandomsearchSolver.py

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hyppopy/solvers/RandomsearchSolver.py

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hyppopy/tests/test_hyperoptsolver.py

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hyppopy/tests/test_hyppopysolver.py

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hyppopy/tests/test_randomsearchsolver.py

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hyppopy/tests/test_solverpool.py

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mpiplayground.py

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mpiplayground_dynpso.py

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optional_requirements.txt

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Merge branch 'master' into dev7e25cd15aafbActions

Description

Details

Event Timeline

Merged Changes

Changes (26)

rOBSHYPPOPY7e25cd15aafb

README.md

doc/developer_guide.rst

hyppopy/BlackboxFunction.py

hyppopy/CandidateDescriptor.py

hyppopy/FunctionSimulator.py

hyppopy/MPIBlackboxFunction.py

hyppopy/SolverPool.py

hyppopy/VisdomViewer.py

hyppopy/globals.py

hyppopy/solvers/DynamicPSOSolver.py

hyppopy/solvers/GridsearchSolver.py

hyppopy/solvers/HyperoptSolver.py

hyppopy/solvers/HyppopySolver.py

hyppopy/solvers/MPISolverWrapper.py

hyppopy/solvers/OptunaSolver.py

hyppopy/solvers/OptunitySolver.py

hyppopy/solvers/QuasiRandomsearchSolver.py

hyppopy/solvers/RandomsearchSolver.py

hyppopy/tests/test_hyperoptsolver.py

hyppopy/tests/test_hyppopysolver.py

hyppopy/tests/test_randomsearchsolver.py

hyppopy/tests/test_solverpool.py

mpiplayground.py

mpiplayground_dynpso.py

optional_requirements.txt

setup.py

Merge branch 'master' into dev
7e25cd15aafb
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