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Maniphest T29157

NCT ISSO Annotation Support with MITK Segmentation Flow
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Description

meta task to collect all tasks that are needed to better support annotation workflows with MITK (especialy for NCT ISSO Annotation tasks)

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StatusAssignedTask
 OpenNoneT29157 NCT ISSO Annotation Support with MITK Segmentation Flow
 ResolvedflocaT28982 Weak Label Annotation Picking Tool
 ResolvedflocaT29146 Union Mode for the picking tool
 ResolvedflocaT29177 [Segmentation] TransferLabelToImage function should support to ignore locks
 ResolvedkislinskT29158 [Segmentation] Custom list for optional label names
 ResolvedkislinskT29159 [Segmentation] Flow bench worklist feature
ResolvedkislinskT29160 [Segmentation] Worklist specification, data structure and io functions
 ResolvedkislinskT29161 [Segmentation] Extend flow bench control view to support worklists
 ResolvedkislinskT29245 Provide a save button for saving interim results
 ResolvedkislinskT29248 Ask what to do with unsaved changes on application shutdown
 ResolvedkislinskT29259 Keyboard shortcuts for processing segmentation task lists
 ResolvedkislinskT29260 Automatically activate segmentation tool for segmentation task
 ResolvedkislinskT29274 Label Loss on repeatedly loaded and saved segmentations
 ResolvedkislinskT29338 "Rename Label" window improvements
 ResolvedkislinskT29372 Optionally skip finished segmentation tasks
 OpenNoneT29444 Ability to add "tags" to annotated regions
 ResolvedkislinskT29445 Make Segmentation Tasks Lists fully available in the MITK Workbench
 OpenNoneT29460 [SEG] Higlight unlabeld pixels
 OpenNoneT29225 Rule Checker for FlowBench
 ResolvedkislinskT29522 Write user guide and file format specification of Segmentation Task Lists
 OpenNoneT29523 Segmentation Task Lists may change label suggestions persistently

Event Timeline

floca created this task.May 3 2022, 5:17 PM
floca renamed this task from N Annotation support to NCT ISSO Annotation Support with MITK Segmentation Flow.May 3 2022, 5:21 PM
floca updated the task description. (Show Details)
floca added a subtask: T28982: Weak Label Annotation Picking Tool.
floca mentioned this in T28555: Simplified version of segmentation with only desired tools.May 3 2022, 6:21 PM
kislinsk triaged this task as Normal priority.May 5 2022, 9:41 AM
floca edited projects, added MITK (v2022.10); removed MITK.May 13 2022, 2:01 PM
floca moved this task from Backlog to Segmentation on the MITK (v2022.10) board.May 16 2022, 12:30 PM
floca closed subtask T28982: Weak Label Annotation Picking Tool as Resolved.May 17 2022, 10:47 AM
floca added subscribers: kislinsk, • s349i.May 19 2022, 10:43 AM
ahmadqasim added a subscriber: ahmadqasim.May 20 2022, 3:42 PM

Hello @floca and @s349i,

Currently, at the IMSI lab, the most important subtasks in the T29157 task for us in the coming weeks are: T29158, T29159, T29160 and T29161.

I have updated the requirements document which can be accessed here: https://docs.google.com/document/d/1SCLIB2ntICCw-sf_akCsJzBzFKmvmNMNtst_zvdaOow/edit#heading=h.nsqcra5uaza4. A new column titled "Priority", lists the requirements which are needed for the next iteration.

The tasks T29158, T29159, T29160 and T29161, cover all of the requirements which are needed at the moment.

A preliminary date for which we would prefer for the requirements to be fulfilled is: 1st July, 2022.

Starting from 1st July, 2022 we will have a new HiWi student working on the annotation of the human HSI data. For that purpose, it would be ideal to have the "Needed" requirements within the next iteration of MITK. So that the annotation process can be started on the MITK platform.

Thanks!

kislinsk closed subtask T29158: [Segmentation] Custom list for optional label names as Resolved.Jun 2 2022, 11:26 AM
kislinsk added a subtask: T29225: Rule Checker for FlowBench.Jul 8 2022, 10:18 AM
kislinsk closed subtask T29159: [Segmentation] Flow bench worklist feature as Resolved.Jul 27 2022, 9:26 AM
kislinsk closed subtask T29245: Provide a save button for saving interim results as Resolved.Jul 28 2022, 2:53 PM
kislinsk closed subtask T29248: Ask what to do with unsaved changes on application shutdown as Resolved.Jul 28 2022, 10:04 PM
• s349i mentioned this in T29274: Label Loss on repeatedly loaded and saved segmentations.Aug 30 2022, 11:27 AM
• s349i added a subtask: T29274: Label Loss on repeatedly loaded and saved segmentations.
kislinsk closed subtask T29274: Label Loss on repeatedly loaded and saved segmentations as Resolved.Sep 6 2022, 10:58 AM
kislinsk closed subtask T29259: Keyboard shortcuts for processing segmentation task lists as Resolved.Sep 8 2022, 12:33 PM
kislinsk closed subtask T29260: Automatically activate segmentation tool for segmentation task as Resolved.
kislinsk closed subtask T29338: "Rename Label" window improvements as Resolved.Oct 14 2022, 5:21 PM
kislinsk closed subtask T29372: Optionally skip finished segmentation tasks as Resolved.Oct 25 2022, 10:09 PM
kislinsk edited projects, added MITK (v2023.04); removed MITK (v2022.10).Nov 23 2022, 3:52 PM
floca moved this task from Backlog to Segmentation on the MITK (v2023.04) board.Nov 24 2022, 1:56 PM
kislinsk closed subtask T29445: Make Segmentation Tasks Lists fully available in the MITK Workbench as Resolved.Apr 17 2023, 8:04 AM
kislinsk removed a subscriber: • s349i.
kislinsk closed subtask T29522: Write user guide and file format specification of Segmentation Task Lists as Resolved.May 16 2023, 11:26 AM
kislinsk edited projects, added MITK (v2023.12); removed MITK (v2023.04).May 17 2023, 2:55 PM
kislinsk edited projects, added MITK (v2024.06); removed MITK (v2023.12).Dec 5 2023, 10:38 AM
MITK · MIC · IMSY · DKFZ