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Maniphest T29497

Full support for all subtasks
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Description

Currently, for MITK 2023.04, only "cerebral_bleed", "hip_implant", "coronary_arteries" subtasks are supported.
Certain subtasks which need multiple nifti file agglomeration (eg. "Body") are not be included yet. This should supported once there is a reader available.

Revisions and Commits

rMITK MITK
Restricted Differential RevisionrMITKfbaeda727e93 Merge remote-tracking branch 'origin/feature/T29468-totalsegmentator-install'…
Restricted Differential RevisionrMITKac4b004a39a6 Add colour to agglomorated label
Restricted Differential RevisionrMITK16385a3c450c New reader for agglomerating individual image masks & Full substasks support in…
Restricted Differential RevisionrMITKd52b8fdbadb6 Code update
Restricted Differential RevisionrMITK25f1a2ec9f05 Pointer to reference semantics
Restricted Differential RevisionrMITKa614f665c40b Minor bugfixes
Restricted Differential RevisionrMITKd5ff8493130c Code refactoring changes: No more reference semantics
Restricted Differential RevisionrMITKbdf3c12e8851 Totalsegmentator support version upgraded to 1.5.5
Restricted Differential RevisionrMITK99762f8969b6 Merge branch 'develop' into feature/T29497-totalseg-subtasks-support
Restricted Differential RevisionrMITKe0ca275f4bc7 Code refactoring changes
Restricted Differential RevisionrMITKa8b995f4c4a2 Minor code updates
Restricted Differential RevisionrMITK5b0c1ae43f3d Total Segmentator tool: support for all subtasks

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StatusAssignedTask
 OpenNoneT29191 [SEG] New segmentation tool candidates
 OpenNoneT29437 [SEG] Add TotalSegmentator
 Resolveda178nT29497 Full support for all subtasks

Event Timeline

a178n triaged this task as Normal priority.Mar 22 2023, 1:59 PM
a178n created this task.
a178n mentioned this in T29461: TotalSegmentator output label names conundrum.Mar 22 2023, 3:10 PM
a178n added a comment.Apr 3 2023, 5:08 PM

Pushed new branch to rMITK MITK: feature/T29497-totalseg-subtasks-support.

a178n updated the task description. (Show Details)Apr 5 2023, 5:15 PM
a178n added a revision: Restricted Differential Revision.
a178n claimed this task.Apr 6 2023, 1:22 PM
a178n added a commit: rMITK5b0c1ae43f3d: Total Segmentator tool: support for all subtasks.Apr 28 2023, 2:05 PM
a178n added a commit: rMITKa8b995f4c4a2: Minor code updates.
a178n added a commit: rMITKe0ca275f4bc7: Code refactoring changes.
a178n added a commit: rMITK99762f8969b6: Merge branch 'develop' into feature/T29497-totalseg-subtasks-support.
a178n added a commit: rMITKbdf3c12e8851: Totalsegmentator support version upgraded to 1.5.5.
a178n added a commit: rMITKa614f665c40b: Minor bugfixes.
a178n added a commit: rMITKd5ff8493130c: Code refactoring changes: No more reference semantics.
a178n added a commit: rMITK25f1a2ec9f05: Pointer to reference semantics.
a178n added a commit: rMITKd52b8fdbadb6: Code update.
a178n added a commit: rMITKac4b004a39a6: Add colour to agglomorated label.
a178n added a commit: rMITK16385a3c450c: New reader for agglomerating individual image masks & Full substasks support in….
a178n added a commit: rMITKfbaeda727e93: Merge remote-tracking branch 'origin/feature/T29468-totalsegmentator-install'….
a178n closed this task as Resolved.May 3 2023, 11:09 AM
kislinsk mentioned this in T29565: 2023 Week 18 (Very Early May).May 4 2023, 3:02 PM
a178n added a comment.May 11 2023, 9:48 AM

Deleted branch from rMITK MITK: feature/T29497-totalseg-subtasks-support.

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