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groehl (Janek Gröhl)
Dumdidumdidum

Projects (7)

User Details

User Since
Aug 1 2016, 12:10 PM (123 w, 2 d)

Recent Activity

Fri, Nov 23

groehl added a member for CAMI: sattler.
Fri, Nov 23, 11:48 AM

Sep 10 2018

groehl added projects to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04]: Restricted Project, Photoacoustics.
Sep 10 2018, 2:01 PM · Photoacoustics, Restricted Project, IGT, MITK

Aug 31 2018

groehl added a task to rMITK2ec63d3f00e8: fixed code, documentation and tests based on feedback from T25163 See T25163…: Unknown Object (Maniphest Task).
Aug 31 2018, 11:44 AM
groehl committed rMITK382226f1b6f8: Merge branch 'T25163-fix-pa-tests' (authored by groehl).
Merge branch 'T25163-fix-pa-tests'
Aug 31 2018, 11:44 AM
groehl committed rMITK2ec63d3f00e8: fixed code, documentation and tests based on feedback from T25163 See T25163… (authored by groehl).
fixed code, documentation and tests based on feedback from T25163 See T25163…
Aug 31 2018, 11:42 AM

Aug 27 2018

groehl added a comment to T25122: PA Bandpass shifts images for each slice a bit more.

@kirchnth check if this still breaks

Aug 27 2018, 1:18 PM · MITK, Photoacoustics
groehl claimed T25298: Remove not working Photoacoustic tests.
Aug 27 2018, 9:58 AM · MITK (2018-04)
groehl closed T25298: Remove not working Photoacoustic tests as Resolved.

Pushed fix to beta

Aug 27 2018, 9:58 AM · MITK (2018-04)
groehl closed T25298: Remove not working Photoacoustic tests, a subtask of T25191: v2018.04-beta, as Resolved.
Aug 27 2018, 9:58 AM · MITK (2018-04)
groehl committed rMITKbc019ee0e6ac: Disabled some of the photoacoustic lib tests (authored by groehl).
Disabled some of the photoacoustic lib tests
Aug 27 2018, 9:57 AM
groehl added a comment to T25298: Remove not working Photoacoustic tests.

Pushed new branch T25298-RemovePATests.

Aug 27 2018, 9:57 AM · MITK (2018-04)
groehl raised the priority of T25298: Remove not working Photoacoustic tests from Wishlist to Normal.
Aug 27 2018, 9:53 AM · MITK (2018-04)
groehl triaged T25298: Remove not working Photoacoustic tests as Wishlist priority.
Aug 27 2018, 9:53 AM · MITK (2018-04)

Aug 13 2018

groehl added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

Please merge into master!

Aug 13 2018, 1:31 PM · Photoacoustics, Restricted Project, IGT, MITK
groehl awarded T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04] a The World Burns token.
Aug 13 2018, 1:31 PM · Photoacoustics, Restricted Project, IGT, MITK
groehl awarded T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04] a The World Burns token.
Aug 13 2018, 1:30 PM · Photoacoustics, Restricted Project, IGT, MITK
groehl raised the priority of T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04] from High to Unbreak Now!.
Aug 13 2018, 1:30 PM · Photoacoustics, Restricted Project, IGT, MITK
groehl added a project to T25164: PA Beamforming and bandpass tests are not working.: Restricted Project.
Aug 13 2018, 1:29 PM · Restricted Project, MITK, Photoacoustics

Aug 6 2018

groehl committed rMITK6661da98a35a: oxygenation batch generator (authored by groehl).
oxygenation batch generator
Aug 6 2018, 2:27 PM

Jul 31 2018

groehl triaged T25164: PA Beamforming and bandpass tests are not working. as Normal priority.
Jul 31 2018, 10:22 AM · Restricted Project, MITK, Photoacoustics
groehl created T25164: PA Beamforming and bandpass tests are not working..
Jul 31 2018, 10:22 AM · Restricted Project, MITK, Photoacoustics

Jul 30 2018

groehl committed rMITK8051ca20374d: include chrono (this time also in the header...) (authored by groehl).
include chrono (this time also in the header...)
Jul 30 2018, 5:48 PM
groehl committed rMITK5b33b5d28d77: disable tests add chrono to imports.. (wtf) (authored by groehl).
disable tests add chrono to imports.. (wtf)
Jul 30 2018, 5:25 PM
groehl committed rMITKa1bf14afa256: Merge branch 'T25160-COMPFixIssues' (authored by groehl).
Merge branch 'T25160-COMPFixIssues'
Jul 30 2018, 4:55 PM
groehl committed rMITK5f043eb3f737: deactivate MC test bc of performance issue (authored by groehl).
deactivate MC test bc of performance issue
Jul 30 2018, 4:35 PM
groehl committed rMITK1f7a48452576: remove image saving tests remove hard HDD link from test code (authored by groehl).
remove image saving tests remove hard HDD link from test code
Jul 30 2018, 4:33 PM
groehl committed rMITK131ff08956eb: disable photoacoustic miniapps per default (authored by groehl).
disable photoacoustic miniapps per default
Jul 30 2018, 4:33 PM

Jul 26 2018

groehl moved T24679: Motion compensation for PAUS imaging from Backlog to wip on the Photoacoustics board.
Jul 26 2018, 10:44 AM · MITK, Photoacoustics
groehl raised the priority of T24679: Motion compensation for PAUS imaging from Wishlist to Normal.

merge this into master

Jul 26 2018, 10:40 AM · MITK, Photoacoustics

Jun 12 2018

groehl added inline comments to rMITKddbf022e1fd6: refactoring of maptype to chromophore type enum..
Jun 12 2018, 10:06 AM

May 8 2018

groehl committed rMITK036b07b7867d: tests are now executable (authored by groehl).
tests are now executable
May 8 2018, 5:58 PM
groehl committed rMITK750e3dc7454a: include export macros and remove dumping images to G: drive (authored by groehl).
include export macros and remove dumping images to G: drive
May 8 2018, 5:58 PM

Apr 27 2018

groehl closed T19509: Segmentation UL Treshold Tool preview color not green as Invalid.

It works in the current master. Closing as invalid.

Apr 27 2018, 1:40 PM · Restricted Project, Bugzilla, MITK
groehl closed T24734: PhotoacousticsLib Tests sometimes fail as Resolved.
Apr 27 2018, 11:32 AM · MITK
groehl added a comment to T24734: PhotoacousticsLib Tests sometimes fail.

Disabled the tests (that fail only sometimes btw..) for now.

Apr 27 2018, 11:32 AM · MITK
groehl committed rMITK444cd36973c2: disable tests that fail sometimes on CI Server. (They run on local machine) (authored by groehl).
disable tests that fail sometimes on CI Server. (They run on local machine)
Apr 27 2018, 11:30 AM
groehl added a comment to T24734: PhotoacousticsLib Tests sometimes fail.

Pushed new branch T24734-FixPhotoacousticsLibTests.

Apr 27 2018, 11:30 AM · MITK
groehl triaged T24734: PhotoacousticsLib Tests sometimes fail as Low priority.
Apr 27 2018, 11:28 AM · MITK

Apr 25 2018

groehl committed rMITK180e8a33d90c: refactored bandpass filter - create separate class - now assumes time series… (authored by groehl).
refactored bandpass filter - create separate class - now assumes time series…
Apr 25 2018, 11:10 PM
groehl committed rMITKc98bd3f8bc63: adopt changes to UI (authored by groehl).
adopt changes to UI
Apr 25 2018, 5:33 PM
groehl committed rMITK9933b0aebe90: streamline usage of resampling filter streamline memory management fix build… (authored by groehl).
streamline usage of resampling filter streamline memory management fix build…
Apr 25 2018, 5:33 PM
groehl committed rMITK48e7d4a4fd23: remove a lot of dublicate code (authored by groehl).
remove a lot of dublicate code
Apr 25 2018, 3:29 PM
groehl committed rMITK4df628410077: BMode Filter working again in CPU version in beamforming tool. (authored by groehl).
BMode Filter working again in CPU version in beamforming tool.
Apr 25 2018, 1:24 PM

Apr 24 2018

groehl committed rMITK803a8a3f0f44: basic functionality of plugin works again (authored by groehl).
basic functionality of plugin works again
Apr 24 2018, 4:24 PM
groehl committed rMITK398e80e808e8: major refactorings - beamforming settings now immutable - beamforming… (authored by groehl).
major refactorings - beamforming settings now immutable - beamforming…
Apr 24 2018, 12:53 PM

Apr 20 2018

groehl committed rMITK2af46a59f5b0: implemented crop image filter (authored by groehl).
implemented crop image filter
Apr 20 2018, 5:19 PM
groehl committed rMITK68ff118850d9: implemented CastToFloatImageFilter (authored by groehl).
implemented CastToFloatImageFilter
Apr 20 2018, 3:43 PM
groehl committed rMITKf9bd86d02061: refactor class names and add filter classes - remove photoacoustics from non PA… (authored by groehl).
refactor class names and add filter classes - remove photoacoustics from non PA…
Apr 20 2018, 1:51 PM
groehl committed rMITKd91515787f4e: Merge remote-tracking branch 'origin/T24688-leak-quick-fix' into T24638… (authored by groehl).
Merge remote-tracking branch 'origin/T24688-leak-quick-fix' into T24638…
Apr 20 2018, 1:51 PM
groehl committed rMITKdecc8ad0e580: Merge remote-tracking branch 'origin/T24682-PA-BP-tukey-alpha' into T24638… (authored by groehl).
Merge remote-tracking branch 'origin/T24682-PA-BP-tukey-alpha' into T24638…
Apr 20 2018, 1:51 PM

Apr 19 2018

groehl committed rMITK5b3bbbf19e0e: remove cropping function from beamforming filter (authored by groehl).
remove cropping function from beamforming filter
Apr 19 2018, 5:37 PM
groehl committed rMITK7a0624f0325e: beamforming works in 2D and 3D now. Plugin currently functional. (authored by groehl).
beamforming works in 2D and 3D now. Plugin currently functional.
Apr 19 2018, 5:19 PM

Apr 18 2018

groehl committed rMITKa4ca85019e3b: refactor beamforming settings to capsulate its members with the goal to make… (authored by groehl).
refactor beamforming settings to capsulate its members with the goal to make…
Apr 18 2018, 6:18 PM
groehl committed rMITKe133ce70b3b7: Merge remote-tracking branch 'origin/T24638-RefactorPhotoacoutsicAlgorithms'… (authored by groehl).
Merge remote-tracking branch 'origin/T24638-RefactorPhotoacoutsicAlgorithms'…
Apr 18 2018, 3:43 PM
groehl committed rMITKb5ae8f698a29: rename changes from photoacousticimage to photoacousticFilterservice (authored by groehl).
rename changes from photoacousticimage to photoacousticFilterservice
Apr 18 2018, 3:43 PM
groehl committed rMITK375b34155f2f: Merge remote-tracking branch 'origin/T24512-SetupPASimulationPipeline' into… (authored by groehl).
Merge remote-tracking branch 'origin/T24512-SetupPASimulationPipeline' into…
Apr 18 2018, 3:43 PM

Apr 17 2018

groehl committed rMITK746990051b5c: added possibility to simulate empty volumes with phantom generator (authored by groehl).
added possibility to simulate empty volumes with phantom generator
Apr 17 2018, 2:56 PM
groehl committed rMITKf6bba9e1cea9: implemented rudimentary version of a beamforming command line tool. (authored by groehl).
implemented rudimentary version of a beamforming command line tool.
Apr 17 2018, 2:56 PM
groehl committed rMITKf99a3a285412: resolve parameter clash and make verbose option more verbose (authored by groehl).
resolve parameter clash and make verbose option more verbose
Apr 17 2018, 2:56 PM

Apr 11 2018

groehl added a comment to T24610: New Colormaps for MITK.

added a test image to check all values in range of colormap (up to 10^6 values)

Apr 11 2018, 3:07 PM · MITK
groehl added a comment to rMITK2085b747fb49: add HotIron colormap again with new name Plasma. to do now: change colormap….

You should take a closer look at formatting :)

Apr 11 2018, 10:13 AM

Apr 6 2018

groehl committed rMITK949090c3e5bb: create simple stump for a beamforming commandline tool for the… (authored by groehl).
create simple stump for a beamforming commandline tool for the…
Apr 6 2018, 1:56 PM
groehl committed rMITK404bd6367cd2: - add a test to the PhotoacousticsLib test files - perform minor changes to the… (authored by groehl).
- add a test to the PhotoacousticsLib test files - perform minor changes to the…
Apr 6 2018, 1:56 PM

Apr 5 2018

groehl removed a member for Photoacoustics: waibel.
Apr 5 2018, 2:57 PM
groehl updated the image for Photoacoustics from F999726: profile to F999742: profile.
Apr 5 2018, 2:56 PM
groehl updated the image for Photoacoustics from F844917: profile to F999726: profile.
Apr 5 2018, 2:33 PM

Apr 4 2018

groehl committed rMITK56a995470ab4: fix mitkmcxyz bug add option to force y directionality of vessels (authored by groehl).
fix mitkmcxyz bug add option to force y directionality of vessels
Apr 4 2018, 5:19 PM
groehl committed rMITK2c94ff7afd1b: Merge branch 'T23431-MemoryConsumptionBug' into T24512-SetupPASimulationPipeline (authored by groehl).
Merge branch 'T23431-MemoryConsumptionBug' into T24512-SetupPASimulationPipeline
Apr 4 2018, 4:16 PM
groehl committed rMITK95c8d57e15f7: add test that reproduces bug. Some general changes to the phantom tissue… (authored by groehl).
add test that reproduces bug. Some general changes to the phantom tissue…
Apr 4 2018, 4:04 PM
groehl added a comment to T23431: [Photoacoustics] Include real partial volume effects into simulation.

Pushed new branch T23431-MemoryConsumptionBug.

Apr 4 2018, 4:04 PM · CAMI, Photoacoustics, MITK
groehl committed rMITK0a624b7bb266: fix mitkIOUtil call (authored by groehl).
fix mitkIOUtil call
Apr 4 2018, 4:01 PM
groehl added a member for Photoacoustics: holzwart.
Apr 4 2018, 3:28 PM
groehl committed rMITK23f9e9b60ff3: Merge branch 'T23431-SimulatePartialVolumeEffects' into T24512… (authored by groehl).
Merge branch 'T23431-SimulatePartialVolumeEffects' into T24512…
Apr 4 2018, 11:52 AM

Mar 26 2018

groehl closed T24088: Fix Photoacoustic Time Measurement Test Bug as Resolved.
Mar 26 2018, 1:17 PM · MITK
groehl closed T23474: Photoacoustic vessel creation does not behave the same in different resolutions as Resolved.
Mar 26 2018, 1:17 PM · CAMI, Photoacoustics, MITK

Mar 9 2018

groehl triaged T24381: Saving of more than 2^29 double values leads to crash. as High priority.
Mar 9 2018, 5:01 PM · MITK
groehl committed rMITK372f15a6b0eb: create a script to simulate the in vitro phantom (authored by groehl).
create a script to simulate the in vitro phantom
Mar 9 2018, 10:31 AM

Mar 8 2018

groehl committed rMITKda1a30bbb208: add additional verbose IO debug output (authored by groehl).
add additional verbose IO debug output
Mar 8 2018, 1:34 PM
groehl added a comment to T24286: Image/PeakImage conflict when loading MITK sessions due to Diffusion Core.

We also have creashes with nrrd images containing optical properties (these are basically stored as 4D/3D+t images without any specific typing and the rule described above also comes into action). In our case, if using a commandline structure, images are imported as PeakImages per default causing crashes.

Mar 8 2018, 11:44 AM · MITK (2018-04)

Mar 1 2018

groehl committed rMITKf04993a153de: tissue batch generator for ce-qpai rebuttal (authored by groehl).
tissue batch generator for ce-qpai rebuttal
Mar 1 2018, 4:22 PM

Jan 19 2018

groehl added a comment to T24088: Fix Photoacoustic Time Measurement Test Bug.

Pushed new branch T24088-FixTimeTest.

Jan 19 2018, 1:58 PM · MITK
groehl triaged T24088: Fix Photoacoustic Time Measurement Test Bug as Low priority.
Jan 19 2018, 1:57 PM · MITK

Dec 19 2017

groehl committed rMITKfe57ed978587: add multi and singlevessel parameters (authored by groehl).
add multi and singlevessel parameters
Dec 19 2017, 4:26 PM

Nov 23 2017

groehl created T23829: [BMC] Challenge Proposals: No field validations.
Nov 23 2017, 3:04 PM · Restricted Project
groehl created T23828: [BMC] In Tasks some of the descriptions might not be clear.
Nov 23 2017, 2:53 PM · Restricted Project
groehl created T23827: [BMC] Number of training cases can be a string.
Nov 23 2017, 2:51 PM · Restricted Project
groehl created T23826: [BMC] Imaging Modalities in a task is missing photoacoustic tomography.
Nov 23 2017, 2:49 PM · Restricted Project
groehl created T23824: [BMC] In dropdown combo boxes you cannot see the full item name.
Nov 23 2017, 2:41 PM · Restricted Project
groehl added a project to T23819: [BMC] Registering title options very limited: Restricted Project.
Nov 23 2017, 2:38 PM · Restricted Project
groehl added a project to T23821: [BMC] Profile Info does not show optional inputs: Restricted Project.
Nov 23 2017, 2:38 PM · Restricted Project
groehl created T23822: [BMC] You can enter a phone number with text characters.
Nov 23 2017, 2:37 PM · Restricted Project
groehl created T23821: [BMC] Profile Info does not show optional inputs.
Nov 23 2017, 2:35 PM · Restricted Project
groehl created T23819: [BMC] Registering title options very limited.
Nov 23 2017, 2:31 PM · Restricted Project

Oct 16 2017

groehl closed T23431: [Photoacoustics] Include real partial volume effects into simulation as Resolved.
Oct 16 2017, 4:30 PM · CAMI, Photoacoustics, MITK

Oct 6 2017

groehl committed rMITKf6555f7248ab: implemented batch generation of tissues and integrated simulation (authored by groehl).
implemented batch generation of tissues and integrated simulation
Oct 6 2017, 3:54 PM
groehl committed rMITK7d951ccb25e7: fix a bug, where some vessels would not be simulated due to new out of bounds… (authored by groehl).
fix a bug, where some vessels would not be simulated due to new out of bounds…
Oct 6 2017, 11:58 AM
groehl committed rMITK97be7d190ce5: add empty TissueBatchGenerator. (authored by groehl).
add empty TissueBatchGenerator.
Oct 6 2017, 11:58 AM
groehl committed rMITK945aca009e7a: Vessel generator will now generate the same vessels independent of the voxel… (authored by groehl).
Vessel generator will now generate the same vessels independent of the voxel…
Oct 6 2017, 10:14 AM
groehl committed rMITK9c92b40fd0a8: Merge branch 'T23431-SimulatePartialVolumeEffects' of ssh://phabricator.mitk. (authored by groehl).
Merge branch 'T23431-SimulatePartialVolumeEffects' of ssh://phabricator.mitk.
Oct 6 2017, 10:14 AM
groehl committed rMITK2cba5f44e22e: make vessel generation independent of resolution - add explicit spacing… (authored by groehl).
make vessel generation independent of resolution - add explicit spacing…
Oct 6 2017, 10:14 AM