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Recent Activity

Nov 30 2022

kislinsk moved T29337: Global Reinit HotKey functionality not there in Mac OSX from Others to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2023.04), Cleared, Checklist
floca closed T28816: [Segmentation] "New Segmentation" dialog to small as Resolved.
Nov 30 2022, 12:13 PM · MITK (v2023.04), Cleared, Restricted Project, Checklist
floca moved T28816: [Segmentation] "New Segmentation" dialog to small from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 10:23 AM · MITK (v2023.04), Cleared, Restricted Project, Checklist
floca moved T26950: Add rule class for DICOM Seg relations to source image from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 9:16 AM · MITK (v2023.04), Cleared

Nov 24 2022

floca moved T29337: Global Reinit HotKey functionality not there in Mac OSX from Backlog to Others on the MITK (v2023.04) board.
Nov 24 2022, 12:09 PM · MITK (v2023.04), Cleared, Checklist
floca closed T29346: Level Window Checklist - Level Window slider inconsistent upper/lower bound behavior on mouse clicks. as Resolved.
Nov 24 2022, 12:07 PM · MITK (v2023.04), Cleared
floca moved T28264: [Segmentation Utilities] Various issues from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 24 2022, 10:39 AM · MITK (v2023.04), Cleared

Nov 23 2022

floca moved T29347: Measurement Checklist - Possible inconsistent recentering behavior when clicking on geometry node in Data Manager. from Backlog to Cycle on the MITK (v2023.04) board.
Nov 23 2022, 3:55 PM · MITK (v2023.04), Cleared, Checklist
floca moved T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work from Backlog to Cycle on the MITK (v2023.04) board.
Nov 23 2022, 3:55 PM · MITK (v2023.04), Cleared, Checklist

Nov 2 2022

s434n closed T29344: Image Rendering - No difference between "Jet" and "Jet Transparent" as Resolved.
Nov 2 2022, 10:32 AM · Cleared, Checklist, MITK (v2022.10)

Oct 28 2022

kislinsk closed T29348: Improve Welcome page with basic navigation hints as Resolved.
Oct 28 2022, 10:08 AM · Cleared, Checklist, MITK (v2022.10)

Oct 27 2022

kislinsk added a comment to T29348: Improve Welcome page with basic navigation hints.

Deleted branch from rMITK MITK: bugfix/T29348-ImproveWelcomePage.

Oct 27 2022, 5:02 PM · Cleared, Checklist, MITK (v2022.10)
kislinsk added a comment to T29348: Improve Welcome page with basic navigation hints.

Pushed new branch to rMITK MITK: bugfix/T29348-ImproveWelcomePage.

Oct 27 2022, 12:43 AM · Cleared, Checklist, MITK (v2022.10)

Oct 25 2022

s434n closed T29343: Image Rendering Checklist - Unclear/Wrong instructions regarding pixel alignment after loading as Resolved.
Oct 25 2022, 2:35 PM · Cleared, Checklist, MITK (v2022.10)
kislinsk claimed T29348: Improve Welcome page with basic navigation hints.
Oct 25 2022, 10:54 AM · Cleared, Checklist, MITK (v2022.10)

Oct 24 2022

s434n renamed T29343: Image Rendering Checklist - Unclear/Wrong instructions regarding pixel alignment after loading from Image Rendering - Loaded image is zoomed into in one view and normal in the other views to Image Rendering Checklist - Unclear/Wrong instructions regarding pixel alignment after loading.
Oct 24 2022, 12:53 PM · Cleared, Checklist, MITK (v2022.10)
s434n claimed T29343: Image Rendering Checklist - Unclear/Wrong instructions regarding pixel alignment after loading.
Oct 24 2022, 9:21 AM · Cleared, Checklist, MITK (v2022.10)
kislinsk added a comment to T29348: Improve Welcome page with basic navigation hints.

I designed a few mouse navigation icons and put together a first HTML draft:

Oct 24 2022, 8:16 AM · Cleared, Checklist, MITK (v2022.10)
kislinsk added a comment to T29343: Image Rendering Checklist - Unclear/Wrong instructions regarding pixel alignment after loading.

Okay, cool. Do you proceed and adapt the checklist to close this task?

Oct 24 2022, 5:35 AM · Cleared, Checklist, MITK (v2022.10)

Oct 21 2022

s434n closed T29341: Moving the LevelWindow slider too many times at extreme ranges makes MITK crash. as Resolved by committing rMITKbed03667f06b: Avoid crashes at extreme level window ranges.
Oct 21 2022, 11:40 AM · Cleared, Checklist, MITK (v2022.10)
kislinsk closed T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view as Resolved by committing rMITK06e76d49de6b: Remove Multilabel Segmentation plugin.
Oct 21 2022, 6:00 AM · MITK (v2022.10), Cleared, Restricted Project
kislinsk closed T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries / dimensions in Utilities View as Resolved by committing rMITK06e76d49de6b: Remove Multilabel Segmentation plugin.
Oct 21 2022, 6:00 AM · MITK (v2022.10), Cleared

Oct 20 2022

kalali closed T29349: [SEG] Improve/correct button names of live wire/lasso tool. as Resolved.
Oct 20 2022, 8:21 PM · Cleared, Restricted Project, Checklist, MITK (v2022.10)
kalali closed T28793: [Segmentation][Multilabel][Options] Changing only decimation rate has no visible effect in "Create smoothed polygon model" as Resolved.
Oct 20 2022, 7:36 PM · Cleared, MITK (v2022.10), Checklist
kalali moved T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view from Segmentation to Cycle on the MITK (v2022.10) board.
Oct 20 2022, 6:04 PM · MITK (v2022.10), Cleared, Restricted Project
kalali added a comment to T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view.

The way the masking is done inside the QmitkImageMaskingWidget of the segmentation-plugin is different but it works as expected and is easy to understand.
As written in the task description the QmitkImageMaskingWidget of the multilabelsegmentation-plugin provided different options, but they were not used so I think we are safe here.

Oct 20 2022, 6:04 PM · MITK (v2022.10), Cleared, Restricted Project
floca added a comment to T29344: Image Rendering - No difference between "Jet" and "Jet Transparent".

So far only the minimum was implemented as transparent. So I would not change anything right now.
And before changing it in one color palet, I would tend to think of making it a general feature of the LookupTable class, to say that its visualization is clamp (thus everything outside the lut window gets transparent. (but that would be a new feature request/idea).

Oct 20 2022, 5:46 PM · Cleared, Checklist, MITK (v2022.10)
kalali claimed T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view.
Oct 20 2022, 5:09 PM · MITK (v2022.10), Cleared, Restricted Project
s434n added a comment to T29344: Image Rendering - No difference between "Jet" and "Jet Transparent".

From testing, it seems to work correctly in one direction. Everything below the level window is transparent (i.e. black) while everything above the level window is dark red, as the maximum end of the colormap. If this is the desired behavior, it works for me. If we want the upper part to also be transparent, then it is not quite right yet.

Oct 20 2022, 1:04 PM · Cleared, Checklist, MITK (v2022.10)
kalali added a comment to T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view.

With {D744 } being landed we need to check if this also applies for the single remaining Segmentation Utilities view.

Oct 20 2022, 12:39 PM · MITK (v2022.10), Cleared, Restricted Project
s434n closed T29330: Picking Tool shows peculiar behaviour in relabel mode for dynamic Segmentations. as Resolved by committing rMITKc13753a00f9f: fix wrong call by timestep instead of timepoint.
Oct 20 2022, 12:14 PM · Cleared, Checklist, MITK (v2022.10)
s434n added a revision to T29330: Picking Tool shows peculiar behaviour in relabel mode for dynamic Segmentations.: Restricted Differential Revision.
Oct 20 2022, 11:13 AM · Cleared, Checklist, MITK (v2022.10)

Oct 19 2022

kalali claimed T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work.

I added a task in the "smoothed polygon" section:
Task

extend one segmentation to multiple neighboring slices to create a “3D” segmentation

Result

The segmentation mask is rendered on multiple neighboring slices.

Oct 19 2022, 2:37 PM · MITK (v2023.04), Cleared, Checklist
kalali added a comment to T28793: [Segmentation][Multilabel][Options] Changing only decimation rate has no visible effect in "Create smoothed polygon model".

I removed the „Smoothed surface creation“ Preference section from the Segmentation - Options checklist.

Oct 19 2022, 2:36 PM · Cleared, MITK (v2022.10), Checklist
kalali edited projects for T28793: [Segmentation][Multilabel][Options] Changing only decimation rate has no visible effect in "Create smoothed polygon model", added: Cleared; removed Missing Info.
Oct 19 2022, 2:34 PM · Cleared, MITK (v2022.10), Checklist
kalali added a comment to T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work.

We discussed this and we decided to remove the options from the preferences completely. This will be done in the mentioned task T28793: [Segmentation][Multilabel][Options] Changing only decimation rate has no visible effect in "Create smoothed polygon model".

Oct 19 2022, 12:46 PM · MITK (v2023.04), Cleared, Checklist
kislinsk added a revision to T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries / dimensions in Utilities View: Restricted Differential Revision.
Oct 19 2022, 12:20 PM · MITK (v2022.10), Cleared
kislinsk added a revision to T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view: Restricted Differential Revision.
Oct 19 2022, 12:20 PM · MITK (v2022.10), Cleared, Restricted Project
s434n added a comment to T29343: Image Rendering Checklist - Unclear/Wrong instructions regarding pixel alignment after loading.

I think there may have been a misunderstanding in this task. With the current description, I am not able to reproduce the problem (zoomed in image when loading).
From the mentioned checklist, I understand it that the tester zoomed in himself, as the checklist recommends, to see if the crosshair is aligned with the pixels. The comment only says "Problem with the brain image. The other are working. Attachment 1", so I assume the image is only to illustrate this.
So the only problem is that brain.nrrd is not pixel-aligned automatically when loaded, only after doing a reinit. I think this step in the checklist is worded a bit unclear anyway, so it's probably best to just improve that instruction and I think that's it.

Oct 19 2022, 12:16 PM · Cleared, Checklist, MITK (v2022.10)
kislinsk raised the priority of T29343: Image Rendering Checklist - Unclear/Wrong instructions regarding pixel alignment after loading from Normal to High.
Oct 19 2022, 11:25 AM · Cleared, Checklist, MITK (v2022.10)

Oct 18 2022

kalali moved T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work from Backlog to Cycle on the MITK (v2022.10) board.
Oct 18 2022, 5:46 PM · MITK (v2023.04), Cleared, Checklist
kalali added a comment to T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work.

I tested this and the smoothing works but as stated in the description it should be made more obvious what to do.
As @kislinsk wrote we will not tackle this issue here but instead remove the options from the preferences. However, this is more about the context menu action "Create smoothed polygon model". Should the whole action be removed? Or are we only talking about the additional preferences for "Smoothed surface creation"? If only the preferences should be removed we still need to adapt the checklist to make it more clear how a smoothed polygon should be created.

Oct 18 2022, 5:33 PM · MITK (v2023.04), Cleared, Checklist

Oct 17 2022

floca added a comment to T29349: [SEG] Improve/correct button names of live wire/lasso tool..

The confirm string should not be changed. Result of the discussion was only to change the clear string.

Oct 17 2022, 7:23 PM · Cleared, Restricted Project, Checklist, MITK (v2022.10)
kalali added a comment to T29348: Improve Welcome page with basic navigation hints.

A short but clear description of the interaction types is given in the MITK StdMultiWidget Editor help page (F1 on "StandardDisplay"):

Oct 17 2022, 7:10 PM · Cleared, Checklist, MITK (v2022.10)
kalali moved T29349: [SEG] Improve/correct button names of live wire/lasso tool. from Segmentation to Cycle on the MITK (v2022.10) board.
Oct 17 2022, 6:59 PM · Cleared, Restricted Project, Checklist, MITK (v2022.10)
kalali added a comment to T29349: [SEG] Improve/correct button names of live wire/lasso tool..

I changed the strings according to the suggestions in this task.
However, your last comment only stated to rename the "Clear Segmentation" button.

Oct 17 2022, 6:58 PM · Cleared, Restricted Project, Checklist, MITK (v2022.10)
kalali added a revision to T29349: [SEG] Improve/correct button names of live wire/lasso tool.: Restricted Differential Revision.
Oct 17 2022, 6:56 PM · Cleared, Restricted Project, Checklist, MITK (v2022.10)
kalali claimed T29349: [SEG] Improve/correct button names of live wire/lasso tool..
Oct 17 2022, 6:53 PM · Cleared, Restricted Project, Checklist, MITK (v2022.10)
kalali closed T29355: Update 3D Segmentation Checklist to reflect current 3D Segmentation tools status as Resolved.
Oct 17 2022, 6:00 PM · Cleared, Restricted Project, Checklist, MITK (v2022.10)
kalali moved T29355: Update 3D Segmentation Checklist to reflect current 3D Segmentation tools status from Backlog to Cycle on the MITK (v2022.10) board.

I updated the "Checklist Segmentation – 3D Segmentation_EN":

  • updated tool-image (no region growing, new icon for Picking and GrowCut)
  • removed region growing test section, changed order of tool sections
  • updated Otsu-tool GUI image
  • added description of "Transfer ..." checkboxes
  • modified description of "GrowCut"-tool
Oct 17 2022, 6:00 PM · Cleared, Restricted Project, Checklist, MITK (v2022.10)