Description

Whitelists/

Wrapping.cmake

mitkFunctionGetMSVCVersion.cmake

mitkFunctionWhitelists.cmake

mitkLanguageOptions.cmake

mitkSWIGConfigurePythonfileBuildtime.cmake

mitkSwigAddLibraryDependencies.cmake

mitkSwigPrepareFiles.cmake

mitkTargetLinkLibrariesWithDynamicLookup.cmake

CMakeExternals/

MITKData.cmake

Documentation/

Doxygen/

3-DeveloperManual/

Starting/

GettingToKnow/

Tutorial/

SettingUpMITK/

Examples/

Tutorial/

Step6/

Step6RegionGrowing.txx

Modules/

AppUtil/

src/

mitkBaseApplication.cpp

Chart/

documentation/

areaChartTemperature.png

areaSplineChartTemperature.png

complexExample.png

mitkChart.dox

scatterChartTemperature.png

userDefinedWidget.png

include/

QmitkChartWidget.h

src/

QmitkChartWidget.cpp

Classification/

CLCore/

mitkAbstractGlobalImageFeature.h

include/

mitkConfigFileReader.h

mitkIntensityQuantifier.h

src/

mitkAbstractGlobalImageFeature.cpp

mitkIntensityQuantifier.cpp

CLImportanceWeighting/

src/

mitkGeneralizedLinearModel.cpp

CLMRUtilities/

include/

mitkMRNormLinearStatisticBasedFilter.h

src/

MRNormalization/

mitkMRNormLinearStatisticBasedFilter.cpp

CLMiniApps/

CL2Dto3DImage.cpp

CLDicom2Nrrd.cpp

CLGlobalImageFeatures.cpp

CLImageTypeConverter.cpp

CLLungSegmentation.cpp

CLMRNormalization.cpp

CLMatchPointReg.cpp

CLMultiForestPrediction.cpp

CLN4.cpp

CLNrrdToPoly.cpp

CLOverlayRoiCenterOfMass.cpp

CLPlanarFigureToNrrd.cpp

CLPointSetToSegmentation.cpp

	CLPurfVoxelClassification.cpp
	CLVoxelClassification.cpp

CLRandomSampling.cpp

CLRemoveEmptyVoxels.cpp

CLResampleImageToReference.cpp

CLScreenshot.cpp

CLSkullMask.cpp

CLVoxelClassification.cpp

CLVoxelFeatures.cpp

CLWeighting.cpp

XRaxSimulationFromCT.cpp

CLUtilities/

itkEnhancedHistogramToNeighbourhoodGreyLevelDifferenceFeaturesFilter.hxx

include/

	itkEnhancedHistogramToNeighbourhoodGreyLevelDifferenceFeaturesFilter.h
	itkEnhancedHistogramToRunLengthFeaturesFilter.h

itkEnhancedHistogramToRunLengthFeaturesFilter.h

itkEnhancedHistogramToRunLengthFeaturesFilter.hxx

itkEnhancedHistogramToSizeZoneFeaturesFilter.h

itkEnhancedHistogramToSizeZoneFeaturesFilter.hxx

itkEnhancedHistogramToTextureFeaturesFilter.h

itkEnhancedHistogramToTextureFeaturesFilter.hxx

	itkEnhancedScalarImageToNeighbourhoodGreyLevelDifferenceFeaturesFilter.h
	itkEnhancedScalarImageToRunLengthFeaturesFilter.h

	itkEnhancedScalarImageToNeighbourhoodGreyLevelDifferenceFeaturesFilter.hxx
	itkEnhancedScalarImageToRunLengthFeaturesFilter.hxx

itkEnhancedScalarImageToNeighbourhoodGreyLevelDifferenceMatrixFilter.h

itkEnhancedScalarImageToNeighbourhoodGreyLevelDifferenceMatrixFilter.hxx

itkEnhancedScalarImageToRunLengthFeaturesFilter.h

itkEnhancedScalarImageToRunLengthFeaturesFilter.hxx

itkEnhancedScalarImageToRunLengthMatrixFilter.hxx

	itkEnhancedScalarImageToSizeZoneFeaturesFilter.h
	itkEnhancedScalarImageToRunLengthFeaturesFilter.h

	itkEnhancedScalarImageToSizeZoneFeaturesFilter.hxx
	itkEnhancedScalarImageToRunLengthFeaturesFilter.hxx

itkEnhancedScalarImageToSizeZoneMatrixFilter.h

itkEnhancedScalarImageToSizeZoneMatrixFilter.hxx

itkLocalStatisticFilter.h

itkLocalStatisticFilter.hxx

itkMultiHistogramFilter.cpp

itkMultiHistogramFilter.h

mitkCLResultWritter.h

mitkCLUtil.h

mitkGIFCooccurenceMatrix.h

mitkGIFCooccurenceMatrix2.h

mitkGIFCurvatureStatistic.h

mitkGIFFirstOrderHistogramStatistics.h

mitkGIFFirstOrderStatistics.h

mitkGIFGrayLevelRunLength.h

mitkGIFGreyLevelDistanceZone.h

mitkGIFGreyLevelRunLength.h

mitkGIFGreyLevelSizeZone.h

mitkGIFImageDescriptionFeatures.h

mitkGIFIntensityVolumeHistogramFeatures.h

mitkGIFLocalIntensity.h

	mitkGIFNeighbourhoodGreyLevelDifference.h
	mitkGIFGrayLevelRunLength.h

mitkGIFNeighbourhoodGreyToneDifferenceFeatures.h

mitkGIFNeighbouringGreyLevelDependenceFeatures.h

mitkGIFVolumetricDensityStatistics.h

mitkGIFVolumetricStatistics.h

mitkGlobalImageFeaturesParameter.h

mitkRandomImageSampler.h

src/

Algorithms/

mitkRandomImageSampler.cpp

GlobalImageFeatures/

mitkGIFCooccurenceMatrix.cpp

mitkGIFCooccurenceMatrix2.cpp

mitkGIFCurvatureStatistic.cpp

mitkGIFFirstOrderHistogramStatistics.cpp

mitkGIFFirstOrderStatistics.cpp

mitkGIFGrayLevelRunLength.cpp

mitkGIFGreyLevelDistanceZone.cpp

mitkGIFGreyLevelRunLength.cpp

mitkGIFGreyLevelSizeZone.cpp

mitkGIFImageDescriptionFeatures.cpp

mitkGIFIntensityVolumeHistogramFeatures.cpp

mitkGIFLocalIntensity.cpp

mitkGIFNeighbourhoodGreyLevelDifference.cpp

mitkGIFNeighbourhoodGreyToneDifferenceFeatures.cpp

mitkGIFNeighbouringGreyLevelDependenceFeatures.cpp

mitkGIFVolumetricDensityStatistics.cpp

mitkGIFVolumetricStatistics.cpp

MiniAppUtils

mitkGlobalImageFeaturesParameter.cpp

mitkSplitParameterToVector.cpp

mitkCLResultWritter.cpp

mitkCLUtil.cpp

test/

mitkGIFCurvatureStatisticTest.cpp

mitkGIFFirstOrderHistogramStatisticsTest.cpp

mitkGIFGreyLevelDistanceZoneTest.cpp

mitkGIFGreyLevelSizeZoneTest.cpp

mitkGIFImageDescriptionFeaturesTest.cpp

mitkGIFLocalIntensityTest.cpp

mitkGIFNeighbourhoodGreyToneDifferenceFeaturesTest.cpp

mitkGIFNeighbouringGreyLevelDependenceFeatureTest.cpp

mitkGIFVolumetricDensityStatisticsTest.cpp

mitkGIFVolumetricStatisticsTest.cpp

mitkGlobalFeaturesTest.cpp

CLVigraRandomForest/

mitkVigraRandomForestClassifier.h

include/

mitkAdditionalRFData.h

mitkImpurityLoss.h

mitkLinearSplitting.h

	mitkPUImpurityLoss.h
	mitkImpurityLoss.h

	mitkPURFClassifier.h
	mitkVigraRandomForestClassifier.h

mitkThresholdSplit.h

src/

Classifier/

	mitkPURFClassifier.cpp
	mitkVigraRandomForestClassifier.cpp

mitkVigraRandomForestClassifier.cpp

Splitter/

mitkAdditionalRFData.cpp

mitkImpurityLoss.cpp

mitkLinearSplitting.cpp

mitkPUImpurityLoss.cpp

mitkThresholdSplit.cpp

DataCollection/

Utilities/

mitkCollectionStatistic.h

Scripts

xvfb-run-save.sh

Core/

include/

mitkBaseRenderer.h

mitkSlicedGeometry3D.h

src/

Rendering/

mitkImageVtkMapper2D.cpp

mitkRenderWindow.cpp

DICOMReader/

mitkDICOMITKSeriesGDCMReader.h

include/

mitkDICOMReaderConfigurator.h

mitkDICOMTagBasedSorter.h

mitkThreeDnTDICOMSeriesReader.h

resource/

configurations/

3D/

classicreader.xml

imageposition.xml

imageposition_byacquisition.xml

imagetime.xml

instancenumber.xml

instancenumber_soft.xml

simpleinstancenumber_soft.xml

slicelocation.xml

3DnT/

classicreader.xml

	imageposition.xml
	classicreader.xml

imageposition_byacquisition.xml

imageposition_bytriggertime.xml

src/

mitkDICOMITKSeriesGDCMReader.cpp

mitkDICOMReaderConfigurator.cpp

mitkDICOMTagBasedSorter.cpp

mitkThreeDnTDICOMSeriesReader.cpp

DICOMReaderServices/

include/

mitkClassicDICOMSeriesReaderService.h

DiffusionImaging/

DiffusionCore/

Testing/

mitkImageReconstructionTest.cpp

autoload/

IO/

mitkDiffusionCoreIOActivator.cpp

mitkDiffusionCoreIOMimeTypes.cpp

mitkPeakImageReader.cpp

mitkPeakImageSerializer.cpp

include/

Algorithms/

itkAdcImageFilter.txx

FiberTracking/

Algorithms/

ClusteringMetrics/

mitkClusteringMetricScalarMap.h

itkFitFibersToImageFilter.cpp

itkFitFibersToImageFilter.h

itkStreamlineTrackingFilter.cpp

Fiberfox/

itkDftImageFilter.h

itkTractsToDWIImageFilter.cpp

itkTractsToDWIImageFilter.h

IODataStructures/

FiberBundle/

mitkFiberBundle.cpp

mitkFiberfoxParameters.cpp

Testing/

mitkFiberProcessingTest.cpp

mitkFiberFitTest.cpp

mitkFiberfoxSignalGenerationTest.cpp

mitkMachineLearningTrackingTest.cpp

cmdapps/

FiberProcessing/

Fiberfox/

FiberfoxOptimization.cpp

Misc/

FlipPeaks.cpp

Tractography/

StreamlineTractography.cpp

TractographyEvaluation/

AnchorBasedScoring.cpp

MiniApps

ExtractAllGradients.cpp

IGT/

Algorithms/

mitkNeedleProjectionFilter.cpp

mitkNeedleProjectionFilter.h

mitkPivotCalibration.cpp

mitkPivotCalibration.h

TrackingDevices/

mitkClaronInterface.cpp

IGTUI/

Qmitk/

QmitkNavigationToolCreationWidget.ui

QmitkNavigationToolStorageSelectionWidget.cpp

ImageStatistics/

mitkPlanarFigureMaskGenerator.cpp

mitkPlanarFigureMaskGenerator.h

mitkLabelSetImageVtkMapper2D.cpp

ModuleList.cmake

Multilabel/

QtWidgets/

include/

QmitkRenderWindow.h

QmitkDataStorageTreeModel.cpp

src/

QmitkPropertyItemModel.cpp

QmitkRenderWindow.cpp

QtWidgetsExt/

src/

QmitkPointListWidget.cpp

QmitkAdaptiveRegionGrowingToolGUI.cpp

SegmentationUI/

Qmitk/

QmitkUSDeviceManagerWidget.cpp

USUI/

Qmitk/

QmitkUSNewVideoDeviceWidget.cpp

	Modules/	Classification/	CLUtilities/	include/
	Plugins/	org.mitk.gui.qt.classificationsegmentation/	src/	internal/

	mitkSplitParameterToVector.h
	org_mitk_gui_qt_classificationsegmentation_Activator.cpp

Plugins/

PluginList.cmake

org.blueberry.ui.qt.log/

org.mitk.gui.qt.classificationsegmentation/

ClassificationRegionGrow.cpp

src/

internal/

ClassificationRegionGrow.h

ClassificationRegionGrowControls.ui

	org_mitk_gui_qt_classificationregiongrow_Activator.cpp
	org_mitk_gui_qt_classificationsegmentation_Activator.cpp

	org_mitk_gui_qt_classificationregiongrow_Activator.h
	org_mitk_gui_qt_classificationsegmentation_Activator.h

org_mitk_gui_qt_classificationsegmentation_Activator.cpp

org_mitk_gui_qt_classificationsegmentation_Activator.h

org.mitk.gui.qt.datamanager/

src/

QmitkDataManagerView.cpp

QmitkFiberClusteringViewUserManual.dox

org.mitk.gui.qt.diffusionimaging.fiberfox/

src/

internal/

QmitkFiberfoxView.cpp

org.mitk.gui.qt.diffusionimaging.fiberprocessing/

documentation/

UserManual/

QmitkFiberFitViewUserManual.dox

QmitkFiberQuantificationViewUserManual.dox

src/

internal/

QmitkFiberClusteringViewControls.ui

QmitkFiberFitView.cpp

QmitkFiberFitViewControls.ui

QmitkFiberQuantificationView.cpp

QmitkFiberQuantificationView.h

QmitkFiberQuantificationViewControls.ui

org.mitk.gui.qt.diffusionimaging.reconstruction/

src/

internal/

QmitkDiffusionQuantificationView.cpp

QmitkTensorReconstructionView.cpp

org.mitk.gui.qt.diffusionimaging.tractography/

src/

internal/

QmitkStreamlineTrackingView.cpp

QmitkStreamlineTrackingView.h

org.mitk.gui.qt.diffusionimaging/

QmitkIGTNavigationToolCalibration.cpp

org.mitk.gui.qt.igttracking/

src/

internal/

QmitkMITKIGTTrackingToolboxView.cpp

QmitkMITKIGTTrackingToolboxView.h

QmitkMITKIGTTrackingToolboxViewControls.ui

org.mitk.gui.qt.imagecropper/

documentation/

UserManual/

Advanced_ImageCropperView.png

Basic_ImageCropperView.png

QmitkImageCropper.dox

QmitkImageStatisticsCalculationThread.cpp

org.mitk.gui.qt.measurementtoolbox/

src/

internal/

QmitkImageStatisticsView.cpp

org.mitk.gui.qt.moviemaker/

org.mitk.gui.qt.multilabelsegmentation/

org.mitk.gui.qt.pointsetinteraction/

org.mitk.gui.qt.preprocessing.resampling

QmitkBasicImageProcessing.dox

documentation

UserManual

QmitkBasicImageProcessing_BIP_Overview.png

QmitkBasicImageProcessing_ImageProcessing_48.png

doxygen

modules.dox

manifest_headers.cmake

QmitkPreprocessingResamplingView.qrc

resources

ImageProcessing_64.xpm

lena.xpm

src

internal

QmitkPreprocessingResamplingView.cpp

QmitkPreprocessingResamplingView.h

QmitkPreprocessingResamplingViewControls.ui

	org.mitk.gui.qt.preprocessing.resampling/	src/	internal/
	org.mitk.gui.qt.classificationsegmentation/	src/	internal/

	mitkPreprocessingResamplingActivator.cpp
	org_mitk_gui_qt_classificationsegmentation_Activator.cpp

	mitkPreprocessingResamplingActivator.h
	org_mitk_gui_qt_classificationsegmentation_Activator.h

org.mitk.gui.qt.properties/

org.mitk.gui.qt.remeshing/

QmitkMorphologicalOperationsWidget.cpp

org.mitk.gui.qt.segmentation/

src/

internal/

SegmentationUtilities/

MorphologicalOperations/

QmitkStdMultiWidgetEditorPreferencePage.cpp

org.mitk.gui.qt.stdmultiwidgeteditor/

src/

internal/

QmitkStdMultiWidgetEditorPreferencePage.ui

org.mitk.gui.qt.toftutorial/

org.mitk.gui.qt.tofutil/

org.mitk.gui.qt.ultrasound/

org.mitk.gui.qt.volumevisualization/

org.mitk.gui.qt.xnat/

SuperBuild.cmake

mbilogTextBackendBase.cpp

Utilities/

mbilog/

mitk_swig_cpp_include.i

LegacyPackaging.cmake

mitkNumpyArrayConversion.cxx

rMITK331e5611f69f

CMake/FindHDF5.cmake

CMake/Whitelists/Wrapping.cmake

CMake/mitkFunctionGetMSVCVersion.cmake

CMake/mitkFunctionWhitelists.cmake

CMake/mitkLanguageOptions.cmake

CMake/mitkSWIGConfigurePythonfileBuildtime.cmake

CMake/mitkSwigAddLibraryDependencies.cmake

CMake/mitkSwigPrepareFiles.cmake

CMake/mitkTargetLinkLibrariesWithDynamicLookup.cmake

CMakeExternals/MITKData.cmake

CMakeLists.txt

Documentation/Doxygen/3-DeveloperManual/Starting/GettingToKnow/Tutorial/Step01.dox

Documentation/Doxygen/3-DeveloperManual/Starting/GettingToKnow/Tutorial/Step06.dox

Documentation/Doxygen/3-DeveloperManual/Starting/GettingToKnow/Tutorial/Step07.dox

Documentation/Doxygen/3-DeveloperManual/Starting/GettingToKnow/Tutorial/Step08.dox

Documentation/Doxygen/3-DeveloperManual/Starting/SettingUpMITK/HowToNewProject.dox

Examples/Tutorial/Step6/Step6RegionGrowing.txx

Modules/AppUtil/src/mitkBaseApplication.cpp

Modules/Chart/documentation/areaChartTemperature.png

Modules/Chart/documentation/areaSplineChartTemperature.png

Modules/Chart/documentation/complexExample.png

Modules/Chart/documentation/mitkChart.dox

Modules/Chart/documentation/scatterChartTemperature.png

Modules/Chart/documentation/userDefinedWidget.png

Modules/Chart/include/QmitkChartWidget.h

Modules/Chart/src/QmitkChartWidget.cpp

Modules/Classification/CLCore/CMakeLists.txt

Modules/Classification/CLCore/files.cmake

Modules/Classification/CLCore/include/mitkAbstractGlobalImageFeature.h

Modules/Classification/CLCore/include/mitkConfigFileReader.h

Modules/Classification/CLCore/include/mitkIntensityQuantifier.h

Modules/Classification/CLCore/src/mitkAbstractGlobalImageFeature.cpp

Modules/Classification/CLCore/src/mitkIntensityQuantifier.cpp

Modules/Classification/CLImportanceWeighting/src/mitkGeneralizedLinearModel.cpp

Modules/Classification/CLMRUtilities/include/mitkMRNormLinearStatisticBasedFilter.h

Modules/Classification/CLMRUtilities/src/MRNormalization/mitkMRNormLinearStatisticBasedFilter.cpp

Modules/Classification/CLMiniApps/CL2Dto3DImage.cpp

Modules/Classification/CLMiniApps/CLDicom2Nrrd.cpp

Modules/Classification/CLMiniApps/CLGlobalImageFeatures.cpp

Modules/Classification/CLMiniApps/CLImageTypeConverter.cpp

Modules/Classification/CLMiniApps/CLLungSegmentation.cpp

Modules/Classification/CLMiniApps/CLMRNormalization.cpp

Modules/Classification/CLMiniApps/CLMatchPointReg.cpp

Modules/Classification/CLMiniApps/CLMultiForestPrediction.cpp

Modules/Classification/CLMiniApps/CLN4.cpp

Modules/Classification/CLMiniApps/CLNrrdToPoly.cpp

Modules/Classification/CLMiniApps/CLOverlayRoiCenterOfMass.cpp

Modules/Classification/CLMiniApps/CLPlanarFigureToNrrd.cpp

Modules/Classification/CLMiniApps/CLPointSetToSegmentation.cpp

Modules/Classification/CLMiniApps/CLPurfVoxelClassification.cpp

Modules/Classification/CLMiniApps/CLRandomSampling.cpp

Modules/Classification/CLMiniApps/CLRemoveEmptyVoxels.cpp

Modules/Classification/CLMiniApps/CLResampleImageToReference.cpp

Modules/Classification/CLMiniApps/CLScreenshot.cpp

Modules/Classification/CLMiniApps/CLSkullMask.cpp

Modules/Classification/CLMiniApps/CLVoxelClassification.cpp

Modules/Classification/CLMiniApps/CLVoxelFeatures.cpp

Modules/Classification/CLMiniApps/CLWeighting.cpp

Modules/Classification/CLMiniApps/CMakeLists.txt

Modules/Classification/CLMiniApps/XRaxSimulationFromCT.cpp

Modules/Classification/CLUtilities/CMakeLists.txt

Modules/Classification/CLUtilities/files.cmake

Modules/Classification/CLUtilities/include/itkEnhancedHistogramToNeighbourhoodGreyLevelDifferenceFeaturesFilter.h

Modules/Classification/CLUtilities/include/itkEnhancedHistogramToNeighbourhoodGreyLevelDifferenceFeaturesFilter.hxx

Modules/Classification/CLUtilities/include/itkEnhancedHistogramToRunLengthFeaturesFilter.h

Modules/Classification/CLUtilities/include/itkEnhancedHistogramToRunLengthFeaturesFilter.hxx

Modules/Classification/CLUtilities/include/itkEnhancedHistogramToSizeZoneFeaturesFilter.h

Modules/Classification/CLUtilities/include/itkEnhancedHistogramToSizeZoneFeaturesFilter.hxx

Modules/Classification/CLUtilities/include/itkEnhancedHistogramToTextureFeaturesFilter.h

Modules/Classification/CLUtilities/include/itkEnhancedHistogramToTextureFeaturesFilter.hxx

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToNeighbourhoodGreyLevelDifferenceFeaturesFilter.h

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToNeighbourhoodGreyLevelDifferenceFeaturesFilter.hxx

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToNeighbourhoodGreyLevelDifferenceMatrixFilter.h

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToNeighbourhoodGreyLevelDifferenceMatrixFilter.hxx

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToRunLengthFeaturesFilter.h

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToRunLengthFeaturesFilter.hxx

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToRunLengthMatrixFilter.hxx

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToSizeZoneFeaturesFilter.h

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToSizeZoneFeaturesFilter.hxx

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToSizeZoneMatrixFilter.h

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToSizeZoneMatrixFilter.hxx

Modules/Classification/CLUtilities/include/itkLocalStatisticFilter.h

Modules/Classification/CLUtilities/include/itkLocalStatisticFilter.hxx

Modules/Classification/CLUtilities/include/itkMultiHistogramFilter.cpp

Modules/Classification/CLUtilities/include/itkMultiHistogramFilter.h

Modules/Classification/CLUtilities/include/mitkCLResultWritter.h

Modules/Classification/CLUtilities/include/mitkCLUtil.h

Modules/Classification/CLUtilities/include/mitkGIFCooccurenceMatrix.h

Modules/Classification/CLUtilities/include/mitkGIFCooccurenceMatrix2.h

Modules/Classification/CLUtilities/include/mitkGIFCurvatureStatistic.h

Modules/Classification/CLUtilities/include/mitkGIFFirstOrderHistogramStatistics.h

Modules/Classification/CLUtilities/include/mitkGIFFirstOrderStatistics.h

Modules/Classification/CLUtilities/include/mitkGIFGrayLevelRunLength.h

Modules/Classification/CLUtilities/include/mitkGIFGreyLevelDistanceZone.h

Modules/Classification/CLUtilities/include/mitkGIFGreyLevelRunLength.h

Modules/Classification/CLUtilities/include/mitkGIFGreyLevelSizeZone.h

Modules/Classification/CLUtilities/include/mitkGIFImageDescriptionFeatures.h

Modules/Classification/CLUtilities/include/mitkGIFIntensityVolumeHistogramFeatures.h

Modules/Classification/CLUtilities/include/mitkGIFLocalIntensity.h

Modules/Classification/CLUtilities/include/mitkGIFNeighbourhoodGreyLevelDifference.h

Modules/Classification/CLUtilities/include/mitkGIFNeighbourhoodGreyToneDifferenceFeatures.h

Modules/Classification/CLUtilities/include/mitkGIFNeighbouringGreyLevelDependenceFeatures.h

Modules/Classification/CLUtilities/include/mitkGIFVolumetricDensityStatistics.h

Modules/Classification/CLUtilities/include/mitkGIFVolumetricStatistics.h

Modules/Classification/CLUtilities/include/mitkGlobalImageFeaturesParameter.h

Modules/Classification/CLUtilities/include/mitkRandomImageSampler.h

Modules/Classification/CLUtilities/include/mitkSplitParameterToVector.h

Modules/Classification/CLUtilities/src/Algorithms/mitkRandomImageSampler.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFCooccurenceMatrix.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFCooccurenceMatrix2.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFCurvatureStatistic.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFFirstOrderHistogramStatistics.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFFirstOrderStatistics.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFGrayLevelRunLength.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFGreyLevelDistanceZone.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFGreyLevelRunLength.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFGreyLevelSizeZone.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFImageDescriptionFeatures.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFIntensityVolumeHistogramFeatures.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFLocalIntensity.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFNeighbourhoodGreyLevelDifference.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFNeighbourhoodGreyToneDifferenceFeatures.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFNeighbouringGreyLevelDependenceFeatures.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFVolumetricDensityStatistics.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFVolumetricStatistics.cpp

Modules/Classification/CLUtilities/src/MiniAppUtils/mitkGlobalImageFeaturesParameter.cpp

Modules/Classification/CLUtilities/src/MiniAppUtils/mitkSplitParameterToVector.cpp

Modules/Classification/CLUtilities/src/mitkCLResultWritter.cpp

Modules/Classification/CLUtilities/src/mitkCLUtil.cpp

Modules/Classification/CLUtilities/test/files.cmake

Modules/Classification/CLUtilities/test/mitkGIFCurvatureStatisticTest.cpp

Modules/Classification/CLUtilities/test/mitkGIFFirstOrderHistogramStatisticsTest.cpp

Modules/Classification/CLUtilities/test/mitkGIFGreyLevelDistanceZoneTest.cpp

Modules/Classification/CLUtilities/test/mitkGIFGreyLevelSizeZoneTest.cpp

Modules/Classification/CLUtilities/test/mitkGIFImageDescriptionFeaturesTest.cpp

Modules/Classification/CLUtilities/test/mitkGIFLocalIntensityTest.cpp

Modules/Classification/CLUtilities/test/mitkGIFNeighbourhoodGreyToneDifferenceFeaturesTest.cpp

Modules/Classification/CLUtilities/test/mitkGIFNeighbouringGreyLevelDependenceFeatureTest.cpp

Modules/Classification/CLUtilities/test/mitkGIFVolumetricDensityStatisticsTest.cpp

Modules/Classification/CLUtilities/test/mitkGIFVolumetricStatisticsTest.cpp

Modules/Classification/CLUtilities/test/mitkGlobalFeaturesTest.cpp

Modules/Classification/CLVigraRandomForest/files.cmake

Modules/Classification/CLVigraRandomForest/include/mitkAdditionalRFData.h

Modules/Classification/CLVigraRandomForest/include/mitkImpurityLoss.h

Modules/Classification/CLVigraRandomForest/include/mitkLinearSplitting.h

Modules/Classification/CLVigraRandomForest/include/mitkPUImpurityLoss.h

Modules/Classification/CLVigraRandomForest/include/mitkPURFClassifier.h

Modules/Classification/CLVigraRandomForest/include/mitkThresholdSplit.h

Modules/Classification/CLVigraRandomForest/include/mitkVigraRandomForestClassifier.h

Modules/Classification/CLVigraRandomForest/src/Classifier/mitkPURFClassifier.cpp

Modules/Classification/CLVigraRandomForest/src/Classifier/mitkVigraRandomForestClassifier.cpp

Modules/Classification/CLVigraRandomForest/src/Splitter/mitkAdditionalRFData.cpp

Modules/Classification/CLVigraRandomForest/src/Splitter/mitkImpurityLoss.cpp

Modules/Classification/CLVigraRandomForest/src/Splitter/mitkLinearSplitting.cpp

Modules/Classification/CLVigraRandomForest/src/Splitter/mitkPUImpurityLoss.cpp

Modules/Classification/CLVigraRandomForest/src/Splitter/mitkThresholdSplit.cpp

Modules/Classification/DataCollection/Utilities/mitkCollectionStatistic.h

Modules/Classification/Scripts/xvfb-run-save.sh

Modules/Core/include/mitkBaseRenderer.h

Modules/Core/include/mitkSlicedGeometry3D.h

Modules/Core/src/Rendering/mitkImageVtkMapper2D.cpp

Modules/Core/src/Rendering/mitkRenderWindow.cpp

Modules/DICOMReader/files.cmake

Modules/DICOMReader/include/mitkDICOMITKSeriesGDCMReader.h

Modules/DICOMReader/include/mitkDICOMReaderConfigurator.h

Modules/DICOMReader/include/mitkDICOMTagBasedSorter.h

Modules/DICOMReader/include/mitkThreeDnTDICOMSeriesReader.h

Modules/DICOMReader/resource/configurations/3D/classicreader.xml

Modules/DICOMReader/resource/configurations/3D/imageposition.xml

Modules/DICOMReader/resource/configurations/3D/imageposition_byacquisition.xml

Modules/DICOMReader/resource/configurations/3D/imagetime.xml

Modules/DICOMReader/resource/configurations/3D/instancenumber.xml

Modules/DICOMReader/resource/configurations/3D/instancenumber_soft.xml

Modules/DICOMReader/resource/configurations/3D/simpleinstancenumber_soft.xml

Modules/DICOMReader/resource/configurations/3D/slicelocation.xml

Modules/DICOMReader/resource/configurations/3DnT/classicreader.xml

Modules/DICOMReader/resource/configurations/3DnT/imageposition.xml

Modules/DICOMReader/resource/configurations/3DnT/imageposition_byacquisition.xml

Modules/DICOMReader/resource/configurations/3DnT/imageposition_bytriggertime.xml

Modules/DICOMReader/src/mitkDICOMITKSeriesGDCMReader.cpp

Modules/DICOMReader/src/mitkDICOMReaderConfigurator.cpp

Modules/DICOMReader/src/mitkDICOMTagBasedSorter.cpp

Modules/DICOMReader/src/mitkThreeDnTDICOMSeriesReader.cpp

Modules/DICOMReaderServices/include/mitkClassicDICOMSeriesReaderService.h

Modules/DiffusionImaging/DiffusionCore/Testing/mitkImageReconstructionTest.cpp

Modules/DiffusionImaging/DiffusionCore/autoload/IO/mitkDiffusionCoreIOActivator.cpp

Modules/DiffusionImaging/DiffusionCore/autoload/IO/mitkDiffusionCoreIOMimeTypes.cpp

Modules/DiffusionImaging/DiffusionCore/autoload/IO/mitkPeakImageReader.cpp

Modules/DiffusionImaging/DiffusionCore/autoload/IO/mitkPeakImageSerializer.cpp

Modules/DiffusionImaging/DiffusionCore/include/Algorithms/itkAdcImageFilter.txx

Modules/DiffusionImaging/FiberTracking/Algorithms/ClusteringMetrics/mitkClusteringMetricScalarMap.h

Modules/DiffusionImaging/FiberTracking/Algorithms/itkFitFibersToImageFilter.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkFitFibersToImageFilter.h

Modules/DiffusionImaging/FiberTracking/Algorithms/itkStreamlineTrackingFilter.cpp

Modules/DiffusionImaging/FiberTracking/Fiberfox/itkDftImageFilter.h

Modules/DiffusionImaging/FiberTracking/Fiberfox/itkTractsToDWIImageFilter.cpp

Modules/DiffusionImaging/FiberTracking/Fiberfox/itkTractsToDWIImageFilter.h

Modules/DiffusionImaging/FiberTracking/IODataStructures/FiberBundle/mitkFiberBundle.cpp

Modules/DiffusionImaging/FiberTracking/IODataStructures/mitkFiberfoxParameters.cpp

Modules/DiffusionImaging/FiberTracking/Testing/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/Testing/files.cmake

Modules/DiffusionImaging/FiberTracking/Testing/mitkFiberFitTest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkFiberProcessingTest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkFiberfoxSignalGenerationTest.cpp

Modules/DiffusionImaging/FiberTracking/Testing/mitkMachineLearningTrackingTest.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberClustering.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FitFibersToImage.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/TractDensity.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/Fiberfox.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/FiberfoxOptimization.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/FlipPeaks.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/StreamlineTractography.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/AnchorBasedScoring.cpp

Modules/DiffusionImaging/MiniApps/ExtractAllGradients.cpp

Modules/IGT/Algorithms/mitkNeedleProjectionFilter.cpp

Modules/IGT/Algorithms/mitkNeedleProjectionFilter.h

Modules/IGT/Algorithms/mitkPivotCalibration.cpp

Modules/IGT/Algorithms/mitkPivotCalibration.h

Modules/IGT/TrackingDevices/mitkClaronInterface.cpp

Modules/IGTUI/Qmitk/QmitkNavigationToolCreationWidget.ui

Modules/IGTUI/Qmitk/QmitkNavigationToolStorageSelectionWidget.cpp

Modules/ImageStatistics/mitkPlanarFigureMaskGenerator.cpp

Modules/ImageStatistics/mitkPlanarFigureMaskGenerator.h

Modules/ModuleList.cmake

Modules/Multilabel/mitkLabelSetImageVtkMapper2D.cpp

Modules/QtWidgets/include/QmitkRenderWindow.h

Modules/QtWidgets/src/QmitkDataStorageTreeModel.cpp

Modules/QtWidgets/src/QmitkPropertyItemModel.cpp

Modules/QtWidgets/src/QmitkRenderWindow.cpp

Modules/QtWidgetsExt/src/QmitkPointListWidget.cpp

Modules/SegmentationUI/Qmitk/QmitkAdaptiveRegionGrowingToolGUI.cpp

Modules/USUI/Qmitk/QmitkUSDeviceManagerWidget.cpp

Modules/USUI/Qmitk/QmitkUSNewVideoDeviceWidget.cpp

Plugins/PluginList.cmake

Plugins/org.blueberry.ui.qt.log/plugin.xml

Plugins/org.mitk.gui.qt.classificationsegmentation/files.cmake

Plugins/org.mitk.gui.qt.classificationsegmentation/plugin.xml

Plugins/org.mitk.gui.qt.classificationsegmentation/src/internal/ClassificationRegionGrow.cpp

Plugins/org.mitk.gui.qt.classificationsegmentation/src/internal/ClassificationRegionGrow.h

Plugins/org.mitk.gui.qt.classificationsegmentation/src/internal/ClassificationRegionGrowControls.ui

Plugins/org.mitk.gui.qt.classificationsegmentation/src/internal/org_mitk_gui_qt_classificationregiongrow_Activator.cpp

Plugins/org.mitk.gui.qt.classificationsegmentation/src/internal/org_mitk_gui_qt_classificationregiongrow_Activator.h

Plugins/org.mitk.gui.qt.classificationsegmentation/src/internal/org_mitk_gui_qt_classificationsegmentation_Activator.cpp

Plugins/org.mitk.gui.qt.classificationsegmentation/src/internal/org_mitk_gui_qt_classificationsegmentation_Activator.h

Plugins/org.mitk.gui.qt.datamanager/plugin.xml

Plugins/org.mitk.gui.qt.datamanager/src/QmitkDataManagerView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberfox/src/internal/QmitkFiberfoxView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/documentation/UserManual/QmitkFiberClusteringViewUserManual.dox

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/documentation/UserManual/QmitkFiberFitViewUserManual.dox

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/documentation/UserManual/QmitkFiberQuantificationViewUserManual.dox

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberClusteringViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberFitView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberFitViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberQuantificationView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberQuantificationView.h

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberQuantificationViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging.reconstruction/src/internal/QmitkDiffusionQuantificationView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.reconstruction/src/internal/QmitkTensorReconstructionView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/src/internal/QmitkStreamlineTrackingView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/src/internal/QmitkStreamlineTrackingView.h

Plugins/org.mitk.gui.qt.diffusionimaging/plugin.xml

Plugins/org.mitk.gui.qt.igttracking/src/internal/QmitkIGTNavigationToolCalibration.cpp

Plugins/org.mitk.gui.qt.igttracking/src/internal/QmitkMITKIGTTrackingToolboxView.cpp

Plugins/org.mitk.gui.qt.igttracking/src/internal/QmitkMITKIGTTrackingToolboxView.h

Plugins/org.mitk.gui.qt.igttracking/src/internal/QmitkMITKIGTTrackingToolboxViewControls.ui

Plugins/org.mitk.gui.qt.imagecropper/documentation/UserManual/Advanced_ImageCropperView.png

Plugins/org.mitk.gui.qt.imagecropper/documentation/UserManual/Basic_ImageCropperView.png

Plugins/org.mitk.gui.qt.imagecropper/documentation/UserManual/QmitkImageCropper.dox

Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsCalculationThread.cpp

Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsView.cpp

Plugins/org.mitk.gui.qt.moviemaker/plugin.xml

Plugins/org.mitk.gui.qt.multilabelsegmentation/plugin.xml

Plugins/org.mitk.gui.qt.pointsetinteraction/plugin.xml

Plugins/org.mitk.gui.qt.preprocessing.resampling/CMakeLists.txt

Plugins/org.mitk.gui.qt.preprocessing.resampling/documentation/UserManual/QmitkBasicImageProcessing.dox

Plugins/org.mitk.gui.qt.preprocessing.resampling/documentation/UserManual/QmitkBasicImageProcessing_BIP_Overview.png

Plugins/org.mitk.gui.qt.preprocessing.resampling/documentation/UserManual/QmitkBasicImageProcessing_ImageProcessing_48.png

Plugins/org.mitk.gui.qt.preprocessing.resampling/documentation/doxygen/modules.dox

Plugins/org.mitk.gui.qt.preprocessing.resampling/files.cmake

Plugins/org.mitk.gui.qt.preprocessing.resampling/manifest_headers.cmake

Plugins/org.mitk.gui.qt.preprocessing.resampling/plugin.xml

Plugins/org.mitk.gui.qt.preprocessing.resampling/resources/ImageProcessing_64.xpm

Plugins/org.mitk.gui.qt.preprocessing.resampling/resources/QmitkPreprocessingResamplingView.qrc

Plugins/org.mitk.gui.qt.preprocessing.resampling/resources/lena.xpm

Plugins/org.mitk.gui.qt.preprocessing.resampling/src/internal/QmitkPreprocessingResamplingView.cpp

Plugins/org.mitk.gui.qt.preprocessing.resampling/src/internal/QmitkPreprocessingResamplingView.h

Plugins/org.mitk.gui.qt.preprocessing.resampling/src/internal/QmitkPreprocessingResamplingViewControls.ui

Plugins/org.mitk.gui.qt.preprocessing.resampling/src/internal/mitkPreprocessingResamplingActivator.cpp

Plugins/org.mitk.gui.qt.preprocessing.resampling/src/internal/mitkPreprocessingResamplingActivator.h

Plugins/org.mitk.gui.qt.properties/plugin.xml

Plugins/org.mitk.gui.qt.remeshing/plugin.xml

Plugins/org.mitk.gui.qt.segmentation/src/internal/SegmentationUtilities/MorphologicalOperations/QmitkMorphologicalOperationsWidget.cpp

Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/internal/QmitkStdMultiWidgetEditorPreferencePage.cpp

Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/internal/QmitkStdMultiWidgetEditorPreferencePage.ui

Plugins/org.mitk.gui.qt.toftutorial/plugin.xml

Plugins/org.mitk.gui.qt.tofutil/plugin.xml

Plugins/org.mitk.gui.qt.ultrasound/plugin.xml

Plugins/org.mitk.gui.qt.volumevisualization/plugin.xml

Plugins/org.mitk.gui.qt.xnat/plugin.xml

SuperBuild.cmake

Utilities/mbilog/mbilogTextBackendBase.cpp

Wrapping/CMakeLists.txt

Wrapping/Common/mitk_swig_classes.i

Wrapping/Common/mitk_swig_common.i

Wrapping/Common/mitk_swig_cpp_include.i

Wrapping/Common/mitk_swig_macros.i

Wrapping/Common/mitk_swig_std.i

Wrapping/Python/CMakeLists.txt

Wrapping/Python/LegacyPackaging.cmake

Wrapping/Python/MITK.i

Wrapping/Python/PackageUtility/Dockerfile-Python

Wrapping/Python/PackageUtility/Dockerfile-x86_64

Wrapping/Python/PackageUtility/Dockerfile-x86_64_2

Wrapping/Python/PackageUtility/imagefiles/cmd.sh

Wrapping/Python/PackageUtility/imagefiles/imagefiles/cmd.sh

Wrapping/Python/PackageUtility/imagefiles/imagefiles/install-gcc.sh

Wrapping/Python/PackageUtility/imagefiles/imagefiles/install-libtiff.sh

Wrapping/Python/PackageUtility/imagefiles/imagefiles/install.sh

Wrapping/Python/PackageUtility/imagefiles/install-gcc.sh

Wrapping/Python/PackageUtility/imagefiles/install-libtiff.sh

Wrapping/Python/PackageUtility/imagefiles/install.sh

Wrapping/Python/PackageUtility/run.sh

Wrapping/Python/Packaging/init.py

Wrapping/Python/Packaging/setup.py.in

Wrapping/Python/Packaging/setupegg.py

Wrapping/Python/dist/CMakeLists.txt

Wrapping/Python/mitkNumpyArrayConversion.cxx