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Diffusion MITK 70e9ab8893fd

2024 Week 24 (Mid June)
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Description

2024 Week 24 (Mid June)

The following - possibly updated - changelog can be viewed as formatted
article at https://phabricator.mitk.org/w/mitk/changelog/2024.24/.

🛠 Third-party dependency changes

Mainly in an effort to make MITK compatible with recent compiler versions, we upgraded a few dependencies.

DependencyOld versionNew version
Boostv1.82v1.85 (patched)
cpp-httplibv0.15.3 (OpenSSL v3), v0.14.3 (OpenSSL v1)
DCMQIv1.2.5v1.3.2
ITKv5.4 RC 2v5.4.0
MatchPointa45efdf9 (17/06/2023)56957430 (04/06/2024)

✨ New features

  • Segmentation
    • Added the MONAI Label segmentation tool
    • Added MRI support to TotalSegmentator tool
    • Check for venv when installing AI tools
  • Measurement
    • Usage hints are shown now when drawing planar figures
  • Development
    • The latest versions of Visual Studio 2022 are supported now (v17.10 and later)
    • The default MITK build configuration is WorkbenchRelease now

🐛 Bugfixes

  • Segmentation
    • Fixed an occasional crash when deleting many labels
    • Cancelling the "Create Label" dialog no longer still creates a label
    • The "Confirm Segmentation" button of the GrowCut tool is now enabled after the first preview
    • Clearing content in the label context menu immediately displays its effect now
    • Fill/Erase tools work again as expected
    • Erase tool does not delete everything anymore when clicking on the background
    • Label colors are displayed correctly for label instances now
    • Fixed a crash when closing a render window editor while a segmentation tool was active
    • Invisible labels are no longer highlighted by default when hovering over them
    • Improved UX when entering threshold values in Threshold tools
    • Default paint brush size in Paint tool has a sane value now
  • Segmentation Utilities
    • Fixed secondary label selection for Boolean Operations
    • Updated documentation
  • ModelFit
    • Fixed several minor bugs in the Inspector view
  • Screenshot
    • The DKFZ logo is not scattered accross high-res screenshots of the 3-d window anymore
  • Volume Visualization
    • Fixed a warning in the terminal window when opening the Volume Visualization view
  • MxN render window editor
    • Image visibility for data-baed layouts is ensured in the respective windows now
  • Pixel Value
    • Segmentations (label set images) are ignored now as they lead to unintuitive pixel values
  • Help
    • Fixed blank help pages in some scenarios
    • The Help Index is the default view in the Help perspective now, which gives a better overview than Help Contents
  • External contributions
    • Countless typos were fixed by luzpaz

🔥 API-breaking changes

none

Details

Provenance
kislinskAuthored on Jun 14 2024, 7:59 AM
kislinskPushed on Jun 14 2024, 8:02 AM
Differential Revision
Restricted Differential Revision
Parents
rMITK77fb083a89c8: Revert auto-load module for ModelFitModelsService
rMITK3fa97dc67d46: 2024 Week 18 (Very Early May)
Branches
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Tags
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References
tag: snapshots/2024-06-14
Tasks
T30469: Build MITK CoreCmdApps on CentOS 7

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Changes (613)
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CMake/GetPrerequisites.cmake

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CMake/NSIS.template.in

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CMake/PackageDepends/MITK_Boost_Config.cmake

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Modules/ModelFit/include/mitkModelFitPlotDataHelper.h

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Modules/ModelFit/include/mitkModelFitResultHelper.h

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Modules/ModelFit/include/mitkSVModelFitCostFunction.h

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Modules/ModelFit/include/mitkTimeGridHelper.h

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Modules/ModelFit/src/Functors/mitkModelFitFunctorBase.cpp

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Modules/ModelFit/src/Models/mitkModelBase.cpp

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Modules/ModelFit/src/Models/mitkThreeStepLinearModel.cpp

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Modules/ModelFit/src/Models/mitkTwoStepLinearModel.cpp

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Modules/ModelFit/test/mitkModelFitInfoTest.cpp

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Modules/ModelFit/test/mitkModelFitResultRelationRuleTest.cpp

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Modules/ModelFitUI/Qmitk/QmitkFitParameterModel.cpp

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Modules/ModelFitUI/Qmitk/QmitkFitParameterModel.h

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Modules/ModelFitUI/Qmitk/QmitkFitParameterWidget.h

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Modules/ModelFitUI/Qmitk/QmitkInitialValuesModel.cpp

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Modules/ModelFitUI/Qmitk/QmitkInitialValuesModel.h

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Modules/ModelFitUI/Qmitk/QmitkParameterFitBackgroundJob.cpp

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Modules/ModelFitUI/Qmitk/QmitkSimpleBarrierParametersDelegate.h

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Modules/Multilabel/Testing/mitkLabelSetImageTest.cpp

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Modules/Multilabel/autoload/DICOMSegIO/mitkDICOMSegmentationIO.cpp

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Modules/Multilabel/autoload/DICOMSegIO/mitkDICOMSegmentationIO.h

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Modules/Multilabel/autoload/IO/mitkLegacyLabelSetImageIO.h

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Modules/Multilabel/autoload/IO/mitkMultiLabelSegmentationIO.h

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Modules/Multilabel/autoload/IO/mitkMultilabelIOMimeTypes.cpp

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Modules/Multilabel/autoload/IO/mitkSegmentationTaskListIO.cpp

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Modules/Multilabel/files.cmake

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Modules/Multilabel/mitkLabel.h

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Modules/Multilabel/mitkLabelHighlightGuard.cpp

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Modules/Multilabel/mitkLabelHighlightGuard.h

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Modules/Multilabel/mitkLabelSetImage.cpp

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Modules/Multilabel/mitkLabelSetImage.h

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Modules/Multilabel/mitkLabelSetImageConverter.h

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Modules/Multilabel/mitkLabelSetImageSurfaceStampFilter.cpp

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Modules/Multilabel/mitkLabelSetImageVtkMapper2D.cpp

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Modules/Multilabel/mitkLabelSetImageVtkMapper2D.h

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Modules/Multilabel/mitkMultiLabelIOHelper.h

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Modules/Multilabel/mitkMultiLabelSegmentationVtkMapper3D.cpp

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Modules/Multilabel/mitkSegmentationTaskList.cpp

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Modules/Multilabel/mitkSegmentationTaskList.h

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Modules/Pharmacokinetics/cmdapps/MRPerfusionMiniApp.cpp

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Modules/Pharmacokinetics/include/mitkAIFBasedModelBase.h

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Modules/Pharmacokinetics/include/mitkAterialInputFunctionGenerator.h

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Modules/Pharmacokinetics/include/mitkConcentrationCurveGenerator.h

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Modules/Pharmacokinetics/include/mitkConvolutionHelper.h

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Modules/Pharmacokinetics/include/mitkCurveDescriptionParameterBase.h

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Modules/Pharmacokinetics/include/mitkCurveParameterFunctor.h

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Modules/Pharmacokinetics/include/mitkDescriptivePharmacokineticBrixModelParameterizer.h

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Modules/Pharmacokinetics/include/mitkDescriptivePharmacokineticBrixModelValueBasedParameterizer.h

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Modules/Pharmacokinetics/src/Models/mitkDescriptivePharmacokineticBrixModelFactory.cpp

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Modules/PharmacokineticsUI/Qmitk/QmitkDescriptionParameterBackgroundJob.cpp

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Modules/PlanarFigure/autoload/IO/mitkPlanarFigureIO.cpp

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Modules/PlanarFigure/autoload/IO/mitkPlanarFigureIO.h

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Modules/PlanarFigure/include/mitkImageToPlanarFigureFilter.h

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Modules/PlanarFigure/include/mitkPlanarFigure.h

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Modules/PlanarFigure/include/mitkPlanarFigureSource.h

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Modules/PlanarFigure/src/DataManagement/mitkPlanarPolygon.cpp

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Modules/Python/autoload/PythonService/mitkPythonService.cpp

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Modules/Python/documentation/mitkPython.dox

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Modules/Python/documentation/slides.tex

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Modules/Python/mitkIPythonService.h

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Modules/QtOverlays/QmitkOverlayContainerWidget.h

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Modules/QtPython/QmitkPythonTextEditor.h

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Modules/QtWidgets/include/QmitkAbstractNodeSelectionWidget.h

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Modules/QtWidgets/include/QmitkDataStorageSimpleTreeModel.h

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Modules/QtWidgets/include/QmitkDataStorageTreeModel.h

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Modules/QtWidgets/include/QmitkNodeDescriptor.h

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Modules/QtWidgets/include/QmitkNodeSelectionButton.h

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Modules/QtWidgets/include/QmitkOverlayWidget.h

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Modules/QtWidgets/include/QmitkServiceListWidget.h

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Modules/QtWidgets/include/mitkIDataStorageInspectorProvider.h

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Modules/QtWidgets/src/QmitkDataStorageTableModel.cpp

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Modules/QtWidgets/src/QmitkDataStorageTreeModel.cpp

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Modules/QtWidgets/src/QmitkIOUtil.cpp

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Modules/QtWidgets/src/QmitkMxNMultiWidget.cpp

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Modules/QtWidgets/src/QmitkPropertiesTableModel.cpp

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Modules/QtWidgets/src/QmitkSynchronizedNodeSelectionWidget.cpp

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Modules/QtWidgets/test/QmitkAbstractNodeSelectionWidgetTest.cpp

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Modules/QtWidgets/test/QmitkThreadedLogTest.cpp

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Modules/QtWidgetsExt/include/QmitkFileChooser.h

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Modules/QtWidgetsExt/include/QmitkNumberPropertyEditor.h

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Modules/QtWidgetsExt/include/QmitkPointListModel.h

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Modules/QtWidgetsExt/include/QmitkPointListView.h

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Modules/QtWidgetsExt/include/QmitkTransferFunctionWidget.h

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Modules/QtWidgetsExt/src/QmitkColorPropertyEditor.cpp

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Modules/QtWidgetsExt/src/QmitkColorPropertyView.cpp

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Modules/QtWidgetsExt/src/QmitkNumberPropertySlider.cpp

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Modules/QtWidgetsExt/src/QmitkPointListWidget.cpp

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Modules/QtWidgetsExt/src/QmitkTransferFunctionCanvas.cpp

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Modules/QtWidgetsExt/src/QmitkTransferFunctionWidget.cpp

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Modules/QtWidgetsExt/src/QmitkVideoBackground.cpp

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Modules/REST/documentation/REST.dox

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Modules/REST/include/mitkIRESTManager.h

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Modules/REST/test/CMakeLists.txt

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Modules/REST/test/files.cmake

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Modules/REST/test/mitkRESTClientTest.cpp

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Modules/REST/test/mitkRESTServerHttpLibTest.cpp

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Modules/REST/test/mitkRESTServerTest.cpp

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Modules/RESTService/include/mitkRESTManager.h

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Modules/RESTService/src/mitkRESTManager.cpp

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Modules/ROI/autoload/IO/src/mitkROIIO.cpp

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Modules/ROI/autoload/IO/src/mitkROIIOMimeTypes.cpp

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Modules/ROI/src/mitkROI.cpp

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Modules/ROI/src/mitkROIMapper2D.cpp

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Modules/ROI/src/mitkROIMapper3D.cpp

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Modules/RT/include/mitkDoseImageVtkMapper2D.h

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Modules/RT/include/mitkRTConstants.h

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Modules/RT/src/mitkDICOMRTMimeTypes.cpp

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Modules/RT/src/mitkDoseImageVtkMapper2D.cpp

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Modules/RTUI/Helper/mitkRTUIConstants.h

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Modules/RTUI/Qmitk/QmitkIsoDoseLevelSetModel.h

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Modules/SceneSerialization/src/mitkGeometryDataSerializer.h

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Modules/SceneSerialization/src/mitkSceneIO.cpp

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Modules/SceneSerialization/src/mitkSceneReaderV1.cpp

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Modules/SceneSerialization/test/mitkDataStorageCompare.h

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Modules/SceneSerialization/test/mitkSceneIOTestScenarioProvider.h

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Modules/SceneSerializationBase/include/mitkVectorPropertySerializer.h

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Modules/Segmentation/Algorithms/itkAdaptiveThresholdIterator.txx

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Modules/Segmentation/Algorithms/itkConnectedAdaptiveThresholdImageFilter.txx

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Modules/Segmentation/Algorithms/itkContourExtractor2DImageFilter.txx

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Modules/Segmentation/Algorithms/mitkContourModelSetToImageFilter.h

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Modules/Segmentation/Algorithms/mitkCorrectorAlgorithm.cpp

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Modules/Segmentation/Algorithms/mitkImageLiveWireContourModelFilter.h

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Modules/Segmentation/Algorithms/mitkManualSegmentationToSurfaceFilter.h

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Modules/Segmentation/Algorithms/mitkVtkImageOverwrite.h

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Modules/Segmentation/CMakeLists.txt

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Modules/Segmentation/Controllers/mitkSegmentationInterpolationController.cpp

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Modules/Segmentation/Controllers/mitkToolManager.h

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Modules/Segmentation/Interactions/mitkContourModelLiveWireInteractor.cpp

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Modules/Segmentation/Interactions/mitkEraseRegionTool.cpp

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Modules/Segmentation/Interactions/mitkEraseRegionTool.h

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Modules/Segmentation/Interactions/mitkFeedbackContourTool.h

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Modules/Segmentation/Interactions/mitkFillRegionBaseTool.cpp

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Modules/Segmentation/Interactions/mitkFillRegionBaseTool.h

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Modules/Segmentation/Interactions/mitkLassoTool.h

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Modules/Segmentation/Interactions/mitkLiveWireTool2D.h

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Modules/Segmentation/Interactions/mitkMonaiLabel2DTool.cpp

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Modules/Segmentation/Interactions/mitkMonaiLabel2DTool.h

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Modules/Segmentation/Interactions/mitkMonaiLabel3DTool.cpp

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Modules/Segmentation/Interactions/mitkMonaiLabel3DTool.h

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Modules/Segmentation/Interactions/mitkMonaiLabelTool.cpp

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Modules/Segmentation/Interactions/mitkMonaiLabelTool.h

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Modules/Segmentation/Interactions/mitkPaintbrushTool.cpp

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Modules/Segmentation/Interactions/mitkProcessExecutor.h

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Modules/Segmentation/Interactions/mitkSegTool2D.cpp

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Modules/Segmentation/Interactions/mitkSegTool2D.h

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Modules/Segmentation/Interactions/mitkSegWithPreviewTool.cpp

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Modules/Segmentation/Interactions/mitkSegWithPreviewTool.h

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Modules/Segmentation/Interactions/mitkSegmentAnythingPythonService.cpp

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Modules/Segmentation/Interactions/mitkSegmentAnythingTool.h

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Modules/Segmentation/Interactions/mitkTotalSegmentatorTool.cpp

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Modules/Segmentation/Interactions/mitkTotalSegmentatorTool.h

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Modules/Segmentation/Interactions/mitknnUnetTool.cpp

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Modules/Segmentation/Interactions/mitknnUnetTool.h

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Modules/Segmentation/Rendering/mitkContourMapper2D.h

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Modules/Segmentation/Rendering/mitkContourSetMapper2D.h

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Modules/Segmentation/SegmentationUtilities/MorphologicalOperations/mitkMorphologicalOperations.cpp

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Modules/Segmentation/Testing/mitkOverwriteSliceFilterObliquePlaneTest.cpp

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Modules/Segmentation/Testing/mitkToolInteractionTest.cpp

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Modules/Segmentation/Testing/mitkToolManagerProviderTest.cpp

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Modules/Segmentation/cmdapps/ContoursToImage.cpp

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Modules/Segmentation/files.cmake

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Modules/SegmentationUI/Qmitk/QmitkBinaryThresholdToolGUIBase.cpp

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Modules/SegmentationUI/Qmitk/QmitkBinaryThresholdToolGUIBase.h

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Modules/SegmentationUI/Qmitk/QmitkGrowCutToolGUI.cpp

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Modules/SegmentationUI/Qmitk/QmitkMedSAMGUIControls.ui

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Modules/SegmentationUI/Qmitk/QmitkMedSAMToolGUI.cpp

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Modules/SegmentationUI/Qmitk/QmitkMonaiLabel2DToolGUI.cpp

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Modules/SegmentationUI/Qmitk/QmitkMonaiLabel2DToolGUI.h

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Modules/SegmentationUI/Qmitk/QmitkMonaiLabel3DToolGUI.cpp

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Modules/SegmentationUI/Qmitk/QmitkMonaiLabel3DToolGUI.h

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Modules/SegmentationUI/Qmitk/QmitkMonaiLabelToolGUI.cpp

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Modules/SegmentationUI/Qmitk/QmitkMonaiLabelToolGUI.h

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Modules/SegmentationUI/Qmitk/QmitkMonaiLabelToolGUIControls.ui

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Modules/SegmentationUI/Qmitk/QmitkMultiLabelInspector.cpp

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Modules/SegmentationUI/Qmitk/QmitkMultiLabelInspector.h

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Modules/SegmentationUI/Qmitk/QmitkMultiLabelManager.cpp

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Modules/SegmentationUI/Qmitk/QmitkMultiLabelManager.h

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Modules/SegmentationUI/Qmitk/QmitkMultiLabelSegWithPreviewToolGUIBase.cpp

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Modules/SegmentationUI/Qmitk/QmitkMultiLabelSegWithPreviewToolGUIBase.h

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Modules/SegmentationUI/Qmitk/QmitkMultiLabelTreeModel.cpp

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Modules/SegmentationUI/Qmitk/QmitkMultiLabelTreeModel.h

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Modules/SegmentationUI/Qmitk/QmitkSegWithPreviewToolGUIBase.cpp

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Modules/SegmentationUI/Qmitk/QmitkSegWithPreviewToolGUIBase.h

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Modules/SegmentationUI/Qmitk/QmitkSegmentAnythingGUIControls.ui

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Modules/SegmentationUI/Qmitk/QmitkSegmentAnythingToolGUI.cpp

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Modules/SegmentationUI/Qmitk/QmitkSegmentationTaskListWidget.cpp

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Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.cpp

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Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.h

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Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.cpp

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Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorGUIControls.ui

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Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.cpp

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Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.h

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Modules/SegmentationUI/Qmitk/QmitknnUNetFolderParser.h

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Modules/SegmentationUI/Qmitk/QmitknnUNetToolGUI.cpp

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Modules/SegmentationUI/Qmitk/QmitknnUNetToolGUI.h

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Modules/SegmentationUI/Qmitk/QmitknnUNetWorker.h

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Modules/SegmentationUI/SegmentationUtilities/QmitkBooleanOperationsWidget.cpp

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Modules/SegmentationUI/SegmentationUtilities/QmitkBooleanOperationsWidgetControls.ui

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Modules/SegmentationUI/SegmentationUtilities/QmitkConvertToMultiLabelSegmentationWidgetControls.ui

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Modules/SegmentationUI/files.cmake

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Modules/SurfaceInterpolation/CMakeLists.txt

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Modules/SurfaceInterpolation/Testing/mitkImageToPointCloudFilterTest.cpp

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Modules/SurfaceInterpolation/mitkCreateDistanceImageFromSurfaceFilter.h

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Modules/SurfaceInterpolation/mitkPlaneProposer.h

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Modules/SurfaceInterpolation/mitkSurfaceInterpolationController.h

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Modules/XNAT/src/QmitkHttpStatusCodeHandler.cpp

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Plugins/org.blueberry.core.commands/src/common/berryNamedHandleObject.h

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Plugins/org.blueberry.core.runtime/src/internal/berryExtensionRegistry.cpp

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Plugins/org.blueberry.ui.qt.help/src/internal/berryHelpPerspective.cpp

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Plugins/org.blueberry.ui.qt.help/src/internal/berryHelpPluginActivator.cpp

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Plugins/org.blueberry.ui.qt.help/src/internal/berryHelpPluginActivator.h

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Plugins/org.blueberry.ui.qt.help/src/internal/berryHelpWebView.cpp

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Plugins/org.blueberry.ui.qt.help/src/internal/berryHelpWebView.h

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Plugins/org.blueberry.ui.qt.help/src/internal/berryQHelpEngineWrapper.cpp

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Plugins/org.blueberry.ui.qt/src/internal/berryParameterValueConverterProxy.h

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Plugins/org.blueberry.ui.qt/src/internal/berryRegistryReader.h

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Plugins/org.blueberry.ui.qt/src/internal/berryWorkbench.cpp

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Plugins/org.blueberry.ui.qt/src/internal/berryWorkbenchPage.h

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Plugins/org.mitk.gui.common/src/mitkIRenderWindowPart.h

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Plugins/org.mitk.gui.qt.common/src/QmitkAbstractMultiWidgetEditor.cpp

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Plugins/org.mitk.gui.qt.common/src/QmitkAbstractMultiWidgetEditor.h

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Plugins/org.mitk.gui.qt.dicombrowser/documentation/UserManual/QmitkDicom.dox

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Plugins/org.mitk.gui.qt.fit.inspector/src/internal/ModelFitInspectorView.cpp

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Plugins/org.mitk.gui.qt.fit.inspector/src/internal/ModelFitInspectorView.h

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Plugins/org.mitk.gui.qt.imagecropper/src/internal/QmitkConvertGeometryDataToROIAction.cpp

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Plugins/org.mitk.gui.qt.matchpoint.framereg/src/internal/QmitkMatchPointFrameCorrection.cpp

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Plugins/org.mitk.gui.qt.matchpoint.framereg/src/internal/QmitkMatchPointFrameCorrection.h

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Plugins/org.mitk.gui.qt.matchpoint.mapper/src/internal/QmitkMatchPointMapper.cpp

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Plugins/org.mitk.gui.qt.matchpoint.visualizer/documentation/UserManual/map_view_visualizer_example.svg

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Plugins/org.mitk.gui.qt.matchpoint.visualizer/src/internal/QmitkMatchPointRegistrationVisualizer.ui

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Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkMeasurementView.cpp

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Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkScreenshotMaker.cpp

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Plugins/org.mitk.gui.qt.mxnmultiwidgeteditor/documentation/UserManual/QmitkMxNMultiWidgetEditor.dox

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Plugins/org.mitk.gui.qt.pixelvalue/src/internal/QmitkPixelValueView.cpp

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Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation.dox

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Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentationTaskList.dox

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Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentationUtilities.dox

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Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentationUtilities_BooleanOperations.png

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Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation_Technical.dox

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Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation_ToolExtensionsGeneralOverview.dox

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Plugins/org.mitk.gui.qt.segmentation/resources/Extract_48x48.png

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Plugins/org.mitk.gui.qt.segmentation/resources/SegmentationUtilities.qrc

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Plugins/org.mitk.gui.qt.segmentation/src/QmitkSegmentAnythingPreferencePage.cpp

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Plugins/org.mitk.gui.qt.segmentation/src/QmitkSegmentationPreferencePage.cpp

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Plugins/org.mitk.gui.qt.segmentation/src/QmitkSegmentationPreferencePageControls.ui

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Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationUtilitiesView.cpp

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Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp

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Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.h

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Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/QmitkStdMultiWidgetEditor.cpp

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SuperBuild.cmake

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Utilities/qtsingleapplication/qtlockedfile.cpp

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