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s434n (Stephen Schaumann)
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Feb 18 2021, 3:37 PM (160 w, 4 d)

Recent Activity

Yesterday

s434n closed T30364: Unable to fine tune 3D Volume Visualization for floating point images as Resolved.
Mon, Mar 18, 5:50 PM · MITK
s434n committed rMITK7272c57d32f2: Update volume visualization to handle floating point data (authored by s434n).
Update volume visualization to handle floating point data
Mon, Mar 18, 5:50 PM
s434n committed rMITK120e6cdbbd18: fix import of ctkDoubleRangeSlider in ui file (authored by s434n).
fix import of ctkDoubleRangeSlider in ui file
Mon, Mar 18, 5:50 PM
s434n committed rMITK009c276588fe: make type of nBins unsigned for correct comparison (authored by s434n).
make type of nBins unsigned for correct comparison
Mon, Mar 18, 5:50 PM
s434n committed rMITKf5dddbdec09b: update volume visualization to handle floating point data (authored by s434n).
update volume visualization to handle floating point data
Mon, Mar 18, 5:50 PM

Fri, Mar 15

s434n claimed T29333: [mxn multi widget] Measurements / planar figure not working.
Fri, Mar 15, 1:49 PM · MITK (v2024.06)

Thu, Mar 14

s434n triaged T30370: [Statistics] Order labels the same way as in the Segmentation View as Normal priority.
Thu, Mar 14, 2:21 PM · MITK (v2024.06)
s434n triaged T30369: [Statistics] Position of minimum and maximum are one off for masks of rotated images as Normal priority.
Thu, Mar 14, 2:13 PM · MITK (v2024.06)

Fri, Mar 8

s434n triaged T30364: Unable to fine tune 3D Volume Visualization for floating point images as Normal priority.
Fri, Mar 8, 3:31 PM · MITK
s434n claimed T30364: Unable to fine tune 3D Volume Visualization for floating point images.
Fri, Mar 8, 3:31 PM · MITK

Wed, Mar 6

s434n added a comment to T29273: Decouple TimeNavigation from SliceNavigationController.

Deleted branch from rMITK MITK: feature/T29273-Decouple-TimeNavigationController-from-SliceNavigationController.

Wed, Mar 6, 2:46 PM · MITK
s434n closed T29273: Decouple TimeNavigation from SliceNavigationController, a subtask of T29264: Overhaul of the SliceNavigationController and the BaseRenderer, as Resolved.
Wed, Mar 6, 2:43 PM · MITK
s434n closed T29273: Decouple TimeNavigation from SliceNavigationController as Resolved.
Wed, Mar 6, 2:43 PM · MITK
s434n removed a project from T30337: Allow custom product name and further customizations: Request for Discussion.
Wed, Mar 6, 12:27 PM · MITK
s434n triaged T30360: [MxN] Add group synchronization as Normal priority.
Wed, Mar 6, 12:25 PM · MITK
s434n removed a project from T30354: [MedSAM] Update SAM python daemon script for MedSAM: Request for Discussion.
Wed, Mar 6, 12:18 PM · MITK (v2024.06)
s434n removed a project from T30314: MedSAM in MITK: Request for Discussion.

Discussion result:
Simplify bounding box interaction / Add simpler version and make it available outside of the Image Cropper

Wed, Mar 6, 12:17 PM · MITK (v2024.06)
s434n removed a project from T29168: [Multilabel Segmentation] Definition and usage of masking and maskstamping: Request for Discussion.

The action makes sense, for the stamping widget we'll have to check if it is used somewhere, and in doubt remove it.

Wed, Mar 6, 11:40 AM · MITK (v2024.06)
s434n assigned T30346: [SEG] Are PointCloudScoringFilter and FeatureBasedEdgeDetectionFilter still in use? (also other filters in segmentation/algorithms) to floca.

Discussion result: remove

Wed, Mar 6, 11:34 AM · MITK
s434n triaged T30348: [Statistics] QmitkImagesStatisticsTreeModel currently does not update when names of inputs changes as Normal priority.

Discussion result: for now, we can live with this being a known issue

Wed, Mar 6, 11:30 AM · MITK
s434n moved T29641: [Movie Maker] Allow rotation around different axes from Cycle to Backlog on the MITK (v2024.06) board.
Wed, Mar 6, 9:23 AM · MITK (v2024.06)

Wed, Feb 21

s434n added a comment to T30328: Failure when loading DICOM files with missing series instance UID.

I am also in favor of option 3.

Wed, Feb 21, 11:04 AM · MITK (v2024.06)

Feb 7 2024

s434n assigned T29390: How to ease the handling of external generated segmentations to kislinsk.
Feb 7 2024, 11:52 AM · MITK (v2024.06)
s434n removed a project from T29390: How to ease the handling of external generated segmentations: Request for Discussion.

Conclusion: still needs subtasks

  • can the binary tag be removed?
  • convert binary images easier into segmentations
  • offer python utility package as a way to convert -> T29389
Feb 7 2024, 11:52 AM · MITK (v2024.06)
s434n removed a project from T29389: Python utility module: Request for Discussion.

Conclusion: makes sense to do, will be tackled implicitly in the future.

Feb 7 2024, 11:47 AM · MITK (v2024.06)
s434n removed a project from T30312: Remove unused, legacy, or obsolete modules and plugins: Request for Discussion.

Discussion: the listed parts can be removed + semantic relations can also be removed (in its current implementation state, because it would need to be reimplemented with property relation rules).

Feb 7 2024, 11:42 AM · MITK (v2024.06)
s434n closed T30307: Join the dcmqi planning at NA-MIC/Project week. as Resolved.

Has been clarified

Feb 7 2024, 11:25 AM · Request for Discussion, MITK
s434n added a comment to T30310: Add new views, e.g. for Seg Task List or Perfusion.

Conclusion: In general it makes sense, but we would want to get rid of the "locked state" of the perspective. Needs further research if the locked state can be removed easily or be made more clearly visible, e.g. by a UI element.

Feb 7 2024, 11:22 AM · Missing Info, MITK
s434n edited projects for T30310: Add new views, e.g. for Seg Task List or Perfusion, added: Missing Info; removed Request for Discussion.
Feb 7 2024, 11:19 AM · Missing Info, MITK
s434n merged T30318: [Segmentation] Saving label preset cuts off last label into T30309: [SEG] Last label of label preset is sometimes not stored.
Feb 7 2024, 11:03 AM · MITK (v2024.06)
s434n merged task T30318: [Segmentation] Saving label preset cuts off last label into T30309: [SEG] Last label of label preset is sometimes not stored.
Feb 7 2024, 11:03 AM · MITK (v2024.06)

Feb 2 2024

s434n triaged T30318: [Segmentation] Saving label preset cuts off last label as Low priority.
Feb 2 2024, 5:45 PM · MITK (v2024.06)

Jan 25 2024

s434n committed rMP80e60e47a72f: implement NTG metric calculation (authored by s434n).
implement NTG metric calculation
Jan 25 2024, 2:07 PM

Jan 10 2024

s434n committed rMITK02c3ee6797f5: Correct typo in manual registration (authored by s434n).
Correct typo in manual registration
Jan 10 2024, 2:21 PM
s434n committed rMITK7d8e6e2c6d38: correctly write "manual" (authored by s434n).
correctly write "manual"
Jan 10 2024, 2:21 PM

Dec 8 2023

s434n triaged T30296: [Perfusion] Concentration Curve Converter view does not hide options when deselecting 3D/4D as Low priority.
Dec 8 2023, 1:32 PM · MITK (v2024.06)

Nov 30 2023

s434n edited the content of MITK v2023.12.
Nov 30 2023, 1:50 PM

Nov 27 2023

s434n committed rMITK57be9c209320: [Statistics] Filter planar figures in data selection by control point position (authored by s434n).
[Statistics] Filter planar figures in data selection by control point position
Nov 27 2023, 12:13 PM
s434n closed T30258: [Statistics] Lines across different geometries can cause crash when analyzed with image as Resolved by committing rMITK57be9c209320: [Statistics] Filter planar figures in data selection by control point position.
Nov 27 2023, 12:13 PM · Checklist, MITK (v2023.12)
s434n committed rMITK0b3d5e72caf9: allow selection of closed planar figures (authored by s434n).
allow selection of closed planar figures
Nov 27 2023, 12:13 PM
s434n committed rMITK1a88d6306e34: add comment to mark temporary code (authored by s434n).
add comment to mark temporary code
Nov 27 2023, 12:13 PM
s434n committed rMITK0e6de7308974: use auto and make added method a free function with earlier returns (authored by s434n).
use auto and make added method a free function with earlier returns
Nov 27 2023, 12:13 PM
s434n committed rMITKf90375061024: fix sign of loop variable (authored by s434n).
fix sign of loop variable
Nov 27 2023, 12:13 PM
s434n committed rMITK6e9ca9ab0d34: check if control points are within image geometry (authored by s434n).
check if control points are within image geometry
Nov 27 2023, 12:13 PM
s434n triaged T30279: [Statistics] Fix cutoff of non-closed planar figures as Normal priority.
Nov 27 2023, 12:10 PM · MITK (v2024.06)

Nov 22 2023

s434n added a comment to T29454: Clarify the versions/editions we publish as installer.

MITK Workbench XL
MITK Workbench - extra

Nov 22 2023, 12:07 PM · MITK (v2024.06), Request for Discussion

Nov 21 2023

s434n added a comment to T30275: [Segmentation] 3D Interpolation Show-Position-Nodes not updating sometimes.

I don't see a good way to handle this differently. Discerning if a slice has become obsolete would be very hard, especially since it's in 3D and the slice could be intersected by a segmented slice of a different orientation. The position node remaining does not seem like a problem to me, so I would vote to close as Invalid or Wontfix.

Nov 21 2023, 12:52 PM · Checklist, MITK
s434n merged task T28800: [Segmentation] Threshold tool updates after each digit if typed in manually into Restricted Maniphest Task.
Nov 21 2023, 9:48 AM · MITK (v2023.12), Checklist, Request for Discussion

Nov 20 2023

s434n added a revision to T30258: [Statistics] Lines across different geometries can cause crash when analyzed with image: Unknown Object (Differential Revision).
Nov 20 2023, 5:19 PM · Checklist, MITK (v2023.12)
s434n claimed T30258: [Statistics] Lines across different geometries can cause crash when analyzed with image.
Nov 20 2023, 4:00 PM · Checklist, MITK (v2023.12)

Nov 17 2023

s434n triaged T30258: [Statistics] Lines across different geometries can cause crash when analyzed with image as High priority.
Nov 17 2023, 4:32 PM · Checklist, MITK (v2023.12)
s434n triaged T30257: Changing opacity messes up rendering order as Normal priority.
Nov 17 2023, 2:33 PM · MITK (v2024.06), Checklist

Nov 16 2023

s434n published a new version of 2023 Week 46 (Mid November).
Nov 16 2023, 5:42 PM

Nov 15 2023

s434n added a comment to T30252: [Segmentation] Deleting an empty group causes Workbench crash.

Can reproduce. I agree with your explanation. When group 1 is empty, it can't actually be selected. There's the dotted line, but group 2 is still in focus (which is stated in the popup dialog). I guess after group 2 is deleted the "focus" is not set correctly.
I guess we could either ensure that the next available label is automatically selected, since usually there is always a label selected, or the "Delete group" should be respective to the dotted-line selection of a group.
I'm not sure if this contradicts previous discussions we had about the topic, but I would actually prefer the second option. Generally, it feels weird that one is able to kind of select a group and interact with its context menu, but the buttons above still refer to the group of the focused label. For example, it is impossible to add a label to an empty group with the buttons (except for the first one).

Nov 15 2023, 4:58 PM · MITK

Nov 14 2023

s434n triaged T30250: [MxN] Windows created by preset have no in-window menus as Normal priority.
Nov 14 2023, 12:20 PM · MITK (v2024.06)

Nov 13 2023

s434n committed rMITKc61b76f04a10: write only image data from itk result directly to output image instead of… (authored by s434n).
write only image data from itk result directly to output image instead of…
Nov 13 2023, 9:39 PM
s434n closed T29608: [Segmentation Utils] Workbench crashes for Morphological operations as Resolved by committing rMITK9a17e7beb611: Correctly handle results of morphological operations.
Nov 13 2023, 9:39 PM · MITK (v2023.12)
s434n committed rMITK9a17e7beb611: Correctly handle results of morphological operations (authored by s434n).
Correctly handle results of morphological operations
Nov 13 2023, 9:39 PM

Nov 8 2023

s434n added a revision to T29608: [Segmentation Utils] Workbench crashes for Morphological operations: Unknown Object (Differential Revision).
Nov 8 2023, 4:41 PM · MITK (v2023.12)
s434n committed rMITK287a0803af1f: Keep track of synchronized MxN windows to avoid nodes being hidden (authored by s434n).
Keep track of synchronized MxN windows to avoid nodes being hidden
Nov 8 2023, 4:07 PM
s434n closed T30184: [MxN] Turning on data synchronizing hides newly added nodes as Resolved by committing rMITK287a0803af1f: Keep track of synchronized MxN windows to avoid nodes being hidden.
Nov 8 2023, 4:07 PM · MITK (v2023.12)
s434n committed rMITK43f51f83fa9e: keep track of synchronized windows to set correct initial selection (authored by s434n).
keep track of synchronized windows to set correct initial selection
Nov 8 2023, 4:07 PM
s434n claimed T29608: [Segmentation Utils] Workbench crashes for Morphological operations.
Nov 8 2023, 4:04 PM · MITK (v2023.12)
s434n triaged T30241: [MxN] Rethink select-all logic in MxN data selection as Normal priority.
Nov 8 2023, 11:30 AM · Request for Discussion, MITK (v2024.06)

Nov 7 2023

s434n moved T29608: [Segmentation Utils] Workbench crashes for Morphological operations from Backlog to Cycle on the MITK (v2023.12) board.
Nov 7 2023, 5:40 PM · MITK (v2023.12)
s434n edited projects for T29608: [Segmentation Utils] Workbench crashes for Morphological operations, added: MITK (v2023.12); removed MITK.
Nov 7 2023, 5:39 PM · MITK (v2023.12)

Nov 2 2023

s434n added a revision to T30184: [MxN] Turning on data synchronizing hides newly added nodes: Unknown Object (Differential Revision).
Nov 2 2023, 7:06 PM · MITK (v2023.12)
s434n renamed T30184: [MxN] Turning on data synchronizing hides newly added nodes from [MxN] Turning on data synchronizing hides segmentation of non-visible nodes to [MxN] Turning on data synchronizing hides newly added nodes.
Nov 2 2023, 5:43 PM · MITK (v2023.12)
s434n triaged T30234: [MxN] Adding new render window turns on visibility of selected nodes as Low priority.
Nov 2 2023, 5:29 PM · MITK (v2024.06)
s434n committed rMITKf21266a4176c: Reactivate / fix exponentiation in formula parser (authored by s434n).
Reactivate / fix exponentiation in formula parser
Nov 2 2023, 10:39 AM
s434n committed rMITKc5bc8ba32dfb: adjust whitespace (authored by s434n).
adjust whitespace
Nov 2 2023, 10:39 AM
s434n committed rMITK68832adcdf1d: reactivate / fix exponentiation in formula parser (authored by s434n).
reactivate / fix exponentiation in formula parser
Nov 2 2023, 10:39 AM

Oct 31 2023

s434n closed T28990: MITK crashes when displaying GenericParamModel maps in the ModelFit Inspector View as Resolved.
Oct 31 2023, 9:59 AM · MITK
s434n added a revision to T28990: MITK crashes when displaying GenericParamModel maps in the ModelFit Inspector View: Unknown Object (Differential Revision).
Oct 31 2023, 9:59 AM · MITK

Oct 30 2023

s434n committed rMITKa21ce061c2ff: set function string when creating generic param model parameterizer (authored by s434n).
set function string when creating generic param model parameterizer
Oct 30 2023, 8:40 AM
s434n committed rMITKef92759cdfe9: set function string when creating generic param model parameterizer (authored by s434n).
set function string when creating generic param model parameterizer
Oct 30 2023, 8:40 AM

Oct 26 2023

s434n committed rMITK0789330902a2: Fix MxN UI for MacOS (authored by s434n).
Fix MxN UI for MacOS
Oct 26 2023, 5:36 PM
s434n closed T30192: [MxN] UI elements not visible on Mac as Resolved by committing rMITK0789330902a2: Fix MxN UI for MacOS.
Oct 26 2023, 5:36 PM · MITK (v2023.12)
s434n committed rMITK5c084ac619e7: fix UI position and size for MacOS (authored by s434n).
fix UI position and size for MacOS
Oct 26 2023, 5:35 PM

Oct 20 2023

s434n added a revision to T30192: [MxN] UI elements not visible on Mac: Unknown Object (Differential Revision).
Oct 20 2023, 1:14 PM · MITK (v2023.12)

Oct 19 2023

s434n closed T30226: [MxN] Removing a node crashes workbench as Resolved.
Oct 19 2023, 1:16 PM · MITK (v2023.12)

Oct 18 2023

s434n committed rMITKbd73eba1caa9: Add safeguard to avoid MxN crashes when removing node (authored by s434n).
Add safeguard to avoid MxN crashes when removing node
Oct 18 2023, 3:45 PM
s434n committed rMITKc5478047dbac: add safeguard to setGeometry of RenderWindowUtilityWidget (authored by s434n).
add safeguard to setGeometry of RenderWindowUtilityWidget
Oct 18 2023, 3:45 PM

Oct 12 2023

s434n updated the task description for T30226: [MxN] Removing a node crashes workbench.
Oct 12 2023, 5:05 PM · MITK (v2023.12)
s434n triaged T30226: [MxN] Removing a node crashes workbench as High priority.
Oct 12 2023, 5:02 PM · MITK (v2023.12)
s434n moved T29302: Movie maker plugin does not work correctly with the new mxn multi widget from Cycle to Backlog on the MITK (v2023.12) board.
Oct 12 2023, 10:22 AM · MITK (v2024.06)
s434n moved T29509: [mxn multi widget] Clicking a render window utility toolbar does not change focus from Cycle to Backlog on the MITK (v2023.12) board.
Oct 12 2023, 10:22 AM · MITK (v2024.06)
s434n placed T29302: Movie maker plugin does not work correctly with the new mxn multi widget up for grabs.
Oct 12 2023, 10:21 AM · MITK (v2024.06)
s434n placed T29509: [mxn multi widget] Clicking a render window utility toolbar does not change focus up for grabs.

I looked shortly into this, but couldn't find an easy way to solve it. The problem is that for the desired behavior, one needs to capture not only events of the utility widget itself, but also of all its child widgets.

Oct 12 2023, 10:21 AM · MITK (v2024.06)

Oct 11 2023

s434n moved T30222: [Registration] Enable use of parameters for command line MiniApp from Backlog to Cycle on the MITK (v2023.12) board.
Oct 11 2023, 12:02 PM · MITK (v2023.12)
s434n triaged T30222: [Registration] Enable use of parameters for command line MiniApp as Normal priority.
Oct 11 2023, 11:05 AM · MITK (v2023.12)
s434n moved T30184: [MxN] Turning on data synchronizing hides newly added nodes from Backlog to Cycle on the MITK (v2023.12) board.
Oct 11 2023, 10:52 AM · MITK (v2023.12)
s434n moved T30192: [MxN] UI elements not visible on Mac from Backlog to Cycle on the MITK (v2023.12) board.
Oct 11 2023, 10:50 AM · MITK (v2023.12)
s434n claimed T30192: [MxN] UI elements not visible on Mac.
Oct 11 2023, 10:50 AM · MITK (v2023.12)

Sep 7 2023

s434n moved T29302: Movie maker plugin does not work correctly with the new mxn multi widget from Cycle to Backlog on the MITK (v2023.12) board.
Sep 7 2023, 10:33 AM · MITK (v2024.06)
s434n removed a project from T29369: [Segmentation Utilities] Handle / select different labels independently: Request for Discussion.
Sep 7 2023, 10:31 AM · MITK (v2024.06)
s434n added a comment to T29369: [Segmentation Utilities] Handle / select different labels independently.
  • Boolean Operations
    • chosen: high effort
    • Can be used so that the other functions can do everything
    • Work only on one image, select two labels
  • Contour to Image & Surface to Image
    • chosen: low effort seems more senseful. The functionality can be achieved via other tools (e.g. boolean)
  • Image Masking
    • chosen: low effort
  • Morphological Operations
    • as proposed
    • Pick an image & pick a label
    • Include options like in picking tool, i.e. generate a new layer when doing an operation, lock labels (to make sure other labels are not overwritten e.g. for a dilution)
  • Add a new tool: Transfer Label could be used to transfer a label from one image to another (if the same image is selected twice, it's just a rename)
Sep 7 2023, 10:30 AM · MITK (v2024.06)
s434n removed a project from T30192: [MxN] UI elements not visible on Mac: Request for Discussion.
Sep 7 2023, 9:57 AM · MITK (v2023.12)
s434n moved T30192: [MxN] UI elements not visible on Mac from Backlog to MITK Meeting on the Request for Discussion board.
Sep 7 2023, 9:14 AM · MITK (v2023.12)
s434n added a project to T30192: [MxN] UI elements not visible on Mac: Request for Discussion.
Sep 7 2023, 9:14 AM · MITK (v2023.12)