Description

CMake/

PackageDepends/

MITK_GDCM_Config.cmake

mitkFunctionCreateModule.cmake

CMakeExternals/

ANN.cmake

ANN.patch

Boost.cmake

DCMQI.cmake

DCMTK.cmake

Eigen.cmake

Eigen.patch

GDCM.cmake

GDCM.patch

ITK-4.13.3.patch

ITK-5.2.1.patch

ITK.cmake

MatchPoint.cmake

OpenCV.cmake

PCRE.cmake

VTK-9.0.1.patch

VTK.cmake

Vigra.cmake

Vigra.patch

mitkColourImageProcessor.cpp

Documentation/

Doxygen/

3-DeveloperManual/

Concepts/

BasicDataTypes.dox

Examples/

Plugins/

org.mitk.example.gui.imaging/

src/

internal/

colourimageprocessing/

simpleexample/

QmitkSimpleExampleView.cpp

org.mitk.example.gui.regiongrowing/

Tutorial/

Step6/

Step7/

Step8/

mitkCropTimestepsImageFilter.h

Modules/

AlgorithmsExt/

include/

mitkNonBlockingAlgorithm.h

src/

mitkAnisotropicRegistrationCommon.cpp

mitkAutoCropImageFilter.cpp

mitkCovarianceMatrixCalculator.cpp

mitkCropTimestepsImageFilter.cpp

mitkMaskImageFilter.cpp

mitkNonBlockingAlgorithm.cpp

mitkPlaneFit.cpp

mitkSimpleHistogram.cpp

mitkWeightedPointTransform.cpp

BasicImageProcessing/

src/

mitkTransformationOperation.cpp

BoundingShape/

include/

mitkBoundingShapeInteractor.h

src/

Interactions/

mitkBoundingShapeInteractor.cpp

CameraCalibration/

mitkCameraIntrinsics.cpp

mitkCameraIntrinsics.h

mitkEndoDebug.cpp

mitkTransform.cpp

Classification/

CLLibSVM/

src/

svm.cpp

CLMiniApps/

ManualSegmentationEvaluation.cpp

CLUtilities/

itkEnhancedScalarImageToRunLengthMatrixFilter.hxx

include/

itkLocalIntensityFilter.hxx

itkLocalStatisticFilter.hxx

itkMultiHistogramFilter.cpp

itkNeighborhoodFunctorImageFilter.h

src/

Features/

itkLineHistogramBasedMassImageFilter.cpp

GlobalImageFeatures/

mitkGIFCurvatureStatistic.cpp

mitkGIFFirstOrderNumericStatistics.cpp

mitkGIFFirstOrderStatistics.cpp

test/

mitkGIFCurvatureStatisticTest.cpp

CLVigraRandomForest/

include/

mitkPURFClassifier.h

mitkVigraRandomForestClassifier.h

src/

Classifier/

mitkPURFClassifier.cpp

mitkVigraRandomForestClassifier.cpp

ContourModel/

DataManagement/

mitkContourElement.cpp

mitkContourElement.h

mitkContourModel.cpp

mitkContourModel.h

IO/

mitkContourModelWriter.h

Core/

mitkRenderingTestHelper.cpp

TestingHelper/

src/

itkImportMitkImageContainer.h

include/

itkVtkAbstractTransform.h

itkVtkAbstractTransform.txx

mitkAbstractTransformGeometry.h

mitkAffineTransform3D.h

mitkArray.h

mitkBaseData.h

mitkBaseGeometry.h

mitkBaseRenderer.h

mitkDataInteractor.h

mitkDataNode.h

mitkDataStorage.h

mitkEqual.h

mitkExtractSliceFilter2.h

mitkIOUtil.h

mitkImage.h

mitkImageAccessorBase.h

mitkImageGenerator.h

mitkImageSource.h

mitkImageToItk.txx

mitkInteractionSchemeSwitcher.h

mitkLimitedLinearUndo.h

mitkLocalStorageHandler.h

mitkMapper.h

mitkMessage.h

mitkPixelType.h

mitkPixelTypeMultiplex.h

mitkPixelTypeTraits.h

mitkPointSet.h

mitkPropertyList.h

mitkRenderingManager.h

mitkSliceNavigationController.h

mitkSlicesCoordinator.h

mitkStandaloneDataStorage.h

mitkUtf8Util.h

mitkExtractSliceFilter2.cpp

src/

Algorithms/

mitkHistogramGenerator.cpp

mitkImageSource.cpp

mitkMultiComponentImageDataComparisonFilter.cpp

mitkRGBToRGBACastImageFilter.cpp

mitkLimitedLinearUndo.cpp

Controllers/

mitkRenderingManager.cpp

mitkSlicesCoordinator.cpp

mitkAbstractTransformGeometry.cpp

DataManagement/

mitkBaseData.cpp

mitkBaseGeometry.cpp

mitkDataNode.cpp

mitkDataStorage.cpp

mitkGeometryTransformHolder.cpp

mitkImage.cpp

mitkImageAccessorBase.cpp

mitkImageDataItem.cpp

mitkImageReadAccessor.cpp

mitkImageStatisticsHolder.cpp

mitkImageVtkReadAccessor.cpp

mitkImageVtkWriteAccessor.cpp

mitkImageWriteAccessor.cpp

mitkLevelWindow.cpp

mitkPlaneGeometry.cpp

mitkPointSet.cpp

mitkPropertyList.cpp

mitkStandaloneDataStorage.cpp

mitkAbstractFileReader.cpp

IO/

mitkAbstractFileWriter.cpp

mitkCustomMimeType.cpp

mitkFileReaderSelector.cpp

mitkFileWriterSelector.cpp

mitkIOMimeTypes.cpp

mitkIOUtil.cpp

mitkItkImageIO.cpp

mitkLog.cpp

mitkPixelType.cpp

mitkRawImageFileReader.h

mitkStandardFileLocations.cpp

mitkSurfaceVtkIO.cpp

mitkUtf8Util.cpp

Interactions/

mitkDataInteractor.cpp

mitkDisplayActionEventBroadcast.cpp

mitkDisplayInteractor.cpp

mitkInteractionSchemeSwitcher.cpp

Rendering/

mitkBaseRenderer.cpp

mitkImageVtkMapper2D.cpp

mitkCoreServices.cpp

mitkArbitraryTimeGeometryTest.cpp

test/

mitkBaseGeometryTest.cpp

mitkIOUtilTest.cpp

mitkImageAccessorTest.cpp

mitkImageDimensionConverterTest.cpp

mitkImageGeneratorTest.cpp

mitkImportItkImageTest.cpp

mitkItkImageIOTest.cpp

mitkLogTest.cpp

mitkPixelTypeTest.cpp

mitkPlanePositionManagerTest.cpp

mitkSurfaceToImageFilterTest.cpp

mitkTinyXMLTest.cpp

CppMicroServices/

cmake/

usGlobalConfig.h.in

core/

src/

module/

usModuleManifest.cpp

util/

usListenerFunctors_p.h

third_party/

jsoncpp.cpp

jsoncpp.h

DICOM/

mitkDICOMTagsOfInterestService.h

autoload/

DICOMImageIO/

include/

mitkDICOMITKSeriesGDCMReader.h

include/

mitkDICOMTagScanner.h

mitkDicomSR_LoadDICOMRGBPixel.cpp

src/

legacy/

mitkDicomSR_LoadDICOMRGBPixel4D.cpp

mitkDicomSR_LoadDICOMScalar.cpp

mitkDicomSR_LoadDICOMScalar4D.cpp

mitkDicomSeriesReader.cpp

mitkDICOMITKSeriesGDCMReader.cpp

mitkDICOMTagScanner.cpp

mitkITKDICOMSeriesReaderHelper.cpp

DICOMTesting/

include/

mitkTestDICOMLoading.h

src/

mitkTestDICOMLoading.cpp

mitkAffineBaseDataInteractor3D.h

DataTypesExt/

include/

src/

mitkAffineBaseDataInteractor3D.cpp

IGT/

Algorithms/

mitkNavigationDataToPointSetFilter.cpp

mitkPivotCalibration.cpp

IO/

mitkNavigationDataPlayer.h

Rendering/

mitkNavigationDataSliceVisualization.cpp

Testing/

mitkTrackingDeviceTest.cpp

TrackingDevices/

mitkClaronTool.h

mitkClaronTrackingDevice.cpp

mitkClaronTrackingDevice.h

mitkNDITrackingDevice.cpp

mitkNDITrackingDevice.h

mitkOpenIGTLinkTrackingDevice.cpp

mitkOpenIGTLinkTrackingDevice.h

mitkOpenIGTLinkTrackingTool.h

mitkOptitrackTrackingDevice.cpp

mitkOptitrackTrackingDevice.h

mitkOptitrackTrackingTool.h

mitkTrackingDevice.cpp

mitkTrackingDevice.h

mitkTrackingTool.cpp

mitkTrackingTool.h

mitkVirtualTrackingDevice.cpp

mitkVirtualTrackingDevice.h

mitkVirtualTrackingTool.cpp

mitkVirtualTrackingTool.h

ImageDenoising/

Testing/

itkTotalVariationDenoisingImageFilterTest.cpp

itkLocalVariationImageFilter.txx

itkTotalVariationDenoisingImageFilter.txx

itkTotalVariationSingleIterationImageFilter.txx

ImageExtraction/

mitkExtractImageFilter.cpp

ImageStatistics/

Testing/

mitkImageStatisticsCalculatorTest.cpp

mitkImageStatisticsTextureAnalysisTest.cpp

itkMultiGaussianImageSource.hxx

mitkExtendedLabelStatisticsImageFilter.h

mitkExtendedLabelStatisticsImageFilter.hxx

mitkExtendedStatisticsImageFilter.h

mitkExtendedStatisticsImageFilter.hxx

mitkHotspotMaskGenerator.cpp

mitkImageStatisticsCalculator.cpp

mitkLabelStatisticsImageFilter.h

mitkLabelStatisticsImageFilter.hxx

mitkMinMaxImageFilterWithIndex.h

mitkMinMaxImageFilterWithIndex.hxx

mitkMinMaxLabelmageFilterWithIndex.h

mitkMinMaxLabelmageFilterWithIndex.hxx

mitkPlanarFigureMaskGenerator.cpp

mitkStatisticsImageFilter.h

mitkStatisticsImageFilter.hxx

QmitkImageStatisticsTreeModel.cpp

ImageStatisticsUI/

Qmitk/

QmitkImageStatisticsTreeModel.h

QmitkIntensityProfileVisualizationWidget.cpp

QmitkImageStatisticsDataGeneratorTest.cpp

test/

LegacyIO/

mitkImageWriter.cpp

mitkItkImageFileReader.cpp

mitkSurfaceVtkWriter.txx

vtkMitkGPUVolumeRayCastMapper.cpp

MapperExt/

src/

MatchPointRegistration/

include/

itkStitchImageFilter.h

itkStitchImageFilter.tpp

mitkImageStitchingHelper.cpp

src/

Helper/

itkMaskedStatisticsImageFilter.hxx

ModelFit/

include/

itkMultiOutputNaryFunctorImageFilter.tpp

mitkBinaryImageToLabelSetImageFilter.h

mitkModelFitFunctorBase.h

mitkModelFitInfo.h

mitkBinaryImageToLabelSetImageFilter.cpp

src/

Common/

mitkTimeGridHelper.cpp

mitkModelFitFunctorBase.cpp

Functors/

itkMaskedStatisticsImageFilterTest.cpp

test/

itkMultiOutputNaryFunctorImageFilterTest.cpp

Multilabel/

autoload/

IO/

mitkLabelSetImageIO.cpp

mitkLabelSetImageConverter.cpp

mitkLabelSetImageHelper.cpp

mitkLabelSetImageHelper.h

mitkGrabCutOpenCVImageFilter.cpp

OpenCVVideoSupport/

Commands/

mitkGrabCutOpenCVImageFilter.h

Testing/

mitkOpenCVToMitkImageFilterTest.cpp

mitkOpenCVToMitkImageFilter.cpp

mitkOpenCVToMitkImageFilter.h

OpenIGTLink/

Filters/

mitkImageToIGTLMessageFilter.cpp

mitkIGTLClient.cpp

mitkIGTLDevice.cpp

mitkIGTLDevice.h

mitkIGTLMessageProvider.cpp

mitkIGTLMessageProvider.h

mitkIGTLMessageQueue.cpp

mitkIGTLMessageQueue.h

mitkIGTLMessageSource.cpp

mitkIGTLMessageSource.h

mitkIGTLServer.cpp

mitkIGTLServer.h

PlanarFigure/

include/

mitkPlanarFigureInteractor.h

mitkPlanarFigureInteractor.cpp

src/

Interactions/

Python/

autoload/

PythonService/

mitkPythonService.cpp

QmitkDataStorageTableModel.h

QtWidgets/

include/

QmitkPropertiesTableModel.h

src/

QmitkIOUtil.cpp

QtWidgetsExt/

src/

QmitkAboutDialog.cpp

mitkDoseImageVtkMapper2D.cpp

RT/

src/

Segmentation/

Algorithms/

itkAdaptiveThresholdIterator.h

itkAdaptiveThresholdIterator.txx

itkContourExtractor2DImageFilter.h

itkContourExtractor2DImageFilter.txx

mitkCorrectorAlgorithm.cpp

mitkDiffImageApplier.cpp

mitkSurfaceStampImageFilter.cpp

DataManagement/

mitkExtrudedContour.cpp

mitkExtrudedContour.h

mitkBinaryThresholdBaseTool.cpp

Interactions/

mitkFastMarchingTool.cpp

mitkFeedbackContourTool.cpp

mitkPaintbrushTool.cpp

mitkTool.cpp

mitkToolEvents.h

mitkWatershedTool.cpp

mitknnUnetTool.cpp

mitkContourSetVtkMapper3D.cpp

Rendering/

Resources/

AI_48x48.png

AI_Cursor_32x32.png

Icons.svg

SegmentationUtilities/

BooleanOperations/

mitkBooleanOperation.cpp

SegmentationUI/

Qmitk/

QmitkLabelSetWidget.cpp

QmitkLabelSetWidget.h

QmitkSlicesInterpolator.cpp

resources/

SegmentationUI.qrc

mitkComputeContourSetNormalsFilter.cpp

SurfaceInterpolation/

ToFHardware/

mitkToFCameraDevice.cpp

mitkToFCameraDevice.h

mitkToFCameraMITKPlayerDevice.cpp

mitkToFCameraMITKPlayerDevice.h

mitkToFImageRecorder.cpp

mitkToFImageRecorder.h

mitkToFNrrdImageWriter.cpp

ToFProcessing/

mitkToFCompositeFilter.cpp

TubeGraph/

include/

mitkTubeGraphDataInteractor.h

src/

Interactions/

mitkTubeGraphDataInteractor.cpp

US/

USFilters/

mitkUSImageSource.cpp

mitkUSImageSource.h

mitkUSImageVideoSource.cpp

USModel/

mitkUSDevice.cpp

mitkUSDevice.h

mitkUSIGTLDevice.cpp

mitkUSVideoDevice.cpp

XNAT/

src/

QmitkXnatTreeModel.cpp

O4: MITK Reviewer Group III

	Modules/	SegmentationUI/	resources/
	Plugins/	org.mitk.gui.qt.multilabelsegmentation/	resources/

NewLabel_48x48.png

	NewSegmentation_48x48.png
	NewSegmentationSession_48x48.png

Plugins/

org.blueberry.core.runtime/

src/

berryDebugUtil.cpp

berryEditorHistoryItem.cpp

org.blueberry.ui.qt/

src/

internal/

berryEditorRegistry.h

berryPerspective.cpp

berryPerspectiveHelper.h

berryWorkbenchPage.h

org.mitk.gui.qt.basicimageprocessing/

QmitkExtWorkbenchWindowAdvisor.cpp

org.mitk.gui.qt.ext/

src/

QmitkFlowApplicationWorkbenchWindowAdvisor.cpp

org.mitk.gui.qt.flowapplication/

src/

internal/

org.mitk.gui.qt.igt.app.ultrasoundtrackingnavigation/

QmitkImageCropperView.cpp

org.mitk.gui.qt.imagecropper/

src/

internal/

QmitkImageNavigatorView.cpp

org.mitk.gui.qt.imagenavigator/

src/

internal/

QmitkMatchPointRegistrationVisualizer.cpp

org.mitk.gui.qt.matchpoint.visualizer/

src/

internal/

org.mitk.gui.qt.multilabelsegmentation/

NewSegmentationSession_48x48.png

plugin.xml

resources/

NewLabel_48x48.png

multilabelsegmentation.qrc

src/

QmitkMultiLabelSegmentationPreferencePage.cpp

QmitkMultiLabelSegmentationPreferencePage.h

internal/

QmitkCreateMultiLabelPresetAction.cpp

QmitkCreateMultiLabelPresetAction.h

QmitkCreateMultiLabelSegmentationAction.cpp

QmitkLoadMultiLabelPresetAction.cpp

QmitkLoadMultiLabelPresetAction.h

QmitkMultiLabelSegmentationControls.ui

QmitkMultiLabelSegmentationView.cpp

QmitkMultiLabelSegmentationView.h

mitkPluginActivator.cpp

org.mitk.gui.qt.segmentation/

documentation/

UserManual/

QmitkSegmentation.dox

QmitkSegmentation_nnUnetTool.png

plugin.xml

QmitkSegmentationPreferencePage.cpp

src/

QmitkSegmentationPreferencePage.h

internal/

Common/

QmitkLabelsWidget.cpp

QmitkLabelsWidget.h

QmitkLabelsWidgetControls.ui

QmitkLayersWidget.cpp

QmitkLayersWidget.h

QmitkLayersWidgetControls.ui

QmitkSegmentationControls.ui

QmitkSegmentationView.cpp

QmitkSegmentationView.h

	QmitkSegmentationViewControls.ui
	QmitkSegmentationControls.ui

QmitkImageMaskingWidget.cpp

SegmentationUtilities/

ImageMasking/

mitkPluginActivator.cpp

QmitkLoadMultiLabelPresetAction.cpp

	org.mitk.gui.qt.segmentation/	src/	internal/
	org.mitk.gui.qt.multilabelsegmentation/	src/	internal/

QmitkLoadMultiLabelPresetAction.h

	QmitkSaveMultiLabelPresetAction.cpp
	QmitkCreateMultiLabelPresetAction.cpp

	QmitkSaveMultiLabelPresetAction.h
	QmitkCreateMultiLabelPresetAction.h

SuperBuild.cmake

rMITK7697de32a437

Applications/PluginGenerator/ProjectTemplate/CMakeLists.txt

CMake/PackageDepends/MITK_GDCM_Config.cmake

CMake/mitkFunctionCreateModule.cmake

CMakeExternals/ANN.cmake

CMakeExternals/ANN.patch

CMakeExternals/Boost.cmake

CMakeExternals/DCMQI.cmake

CMakeExternals/DCMTK.cmake

CMakeExternals/Eigen.cmake

CMakeExternals/Eigen.patch

CMakeExternals/GDCM.cmake

CMakeExternals/GDCM.patch

CMakeExternals/ITK-4.13.3.patch

CMakeExternals/ITK-5.2.1.patch

CMakeExternals/ITK.cmake

CMakeExternals/MatchPoint.cmake

CMakeExternals/OpenCV.cmake

CMakeExternals/PCRE.cmake

CMakeExternals/VTK-9.0.1.patch

CMakeExternals/VTK.cmake

CMakeExternals/Vigra.cmake

CMakeExternals/Vigra.patch

CMakeLists.txt

Documentation/Doxygen/3-DeveloperManual/Concepts/BasicDataTypes.dox

Examples/Plugins/org.mitk.example.gui.imaging/src/internal/colourimageprocessing/mitkColourImageProcessor.cpp

Examples/Plugins/org.mitk.example.gui.imaging/src/internal/simpleexample/QmitkSimpleExampleView.cpp

Examples/Plugins/org.mitk.example.gui.regiongrowing/CMakeLists.txt

Examples/Tutorial/Step6/CMakeLists.txt

Examples/Tutorial/Step7/CMakeLists.txt

Examples/Tutorial/Step8/CMakeLists.txt

Modules/AlgorithmsExt/include/mitkCropTimestepsImageFilter.h

Modules/AlgorithmsExt/include/mitkNonBlockingAlgorithm.h

Modules/AlgorithmsExt/src/mitkAnisotropicRegistrationCommon.cpp

Modules/AlgorithmsExt/src/mitkAutoCropImageFilter.cpp

Modules/AlgorithmsExt/src/mitkCovarianceMatrixCalculator.cpp

Modules/AlgorithmsExt/src/mitkCropTimestepsImageFilter.cpp

Modules/AlgorithmsExt/src/mitkMaskImageFilter.cpp

Modules/AlgorithmsExt/src/mitkNonBlockingAlgorithm.cpp

Modules/AlgorithmsExt/src/mitkPlaneFit.cpp

Modules/AlgorithmsExt/src/mitkSimpleHistogram.cpp

Modules/AlgorithmsExt/src/mitkWeightedPointTransform.cpp

Modules/BasicImageProcessing/src/mitkTransformationOperation.cpp

Modules/BoundingShape/include/mitkBoundingShapeInteractor.h

Modules/BoundingShape/src/Interactions/mitkBoundingShapeInteractor.cpp

Modules/CMakeLists.txt

Modules/CameraCalibration/mitkCameraIntrinsics.cpp

Modules/CameraCalibration/mitkCameraIntrinsics.h

Modules/CameraCalibration/mitkEndoDebug.cpp

Modules/CameraCalibration/mitkTransform.cpp

Modules/Classification/CLLibSVM/src/svm.cpp

Modules/Classification/CLMiniApps/CMakeLists.txt

Modules/Classification/CLMiniApps/ManualSegmentationEvaluation.cpp

Modules/Classification/CLUtilities/CMakeLists.txt

Modules/Classification/CLUtilities/include/itkEnhancedScalarImageToRunLengthMatrixFilter.hxx

Modules/Classification/CLUtilities/include/itkLocalIntensityFilter.hxx

Modules/Classification/CLUtilities/include/itkLocalStatisticFilter.hxx

Modules/Classification/CLUtilities/include/itkMultiHistogramFilter.cpp

Modules/Classification/CLUtilities/include/itkNeighborhoodFunctorImageFilter.h

Modules/Classification/CLUtilities/src/Features/itkLineHistogramBasedMassImageFilter.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFCurvatureStatistic.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFFirstOrderNumericStatistics.cpp

Modules/Classification/CLUtilities/src/GlobalImageFeatures/mitkGIFFirstOrderStatistics.cpp

Modules/Classification/CLUtilities/test/mitkGIFCurvatureStatisticTest.cpp

Modules/Classification/CLVigraRandomForest/include/mitkPURFClassifier.h

Modules/Classification/CLVigraRandomForest/include/mitkVigraRandomForestClassifier.h

Modules/Classification/CLVigraRandomForest/src/Classifier/mitkPURFClassifier.cpp

Modules/Classification/CLVigraRandomForest/src/Classifier/mitkVigraRandomForestClassifier.cpp

Modules/ContourModel/DataManagement/mitkContourElement.cpp

Modules/ContourModel/DataManagement/mitkContourElement.h

Modules/ContourModel/DataManagement/mitkContourModel.cpp

Modules/ContourModel/DataManagement/mitkContourModel.h

Modules/ContourModel/IO/mitkContourModelWriter.h

Modules/Core/CMakeLists.txt

Modules/Core/TestingHelper/src/mitkRenderingTestHelper.cpp

Modules/Core/files.cmake

Modules/Core/include/itkImportMitkImageContainer.h

Modules/Core/include/itkVtkAbstractTransform.h

Modules/Core/include/itkVtkAbstractTransform.txx

Modules/Core/include/mitkAbstractTransformGeometry.h

Modules/Core/include/mitkAffineTransform3D.h

Modules/Core/include/mitkArray.h

Modules/Core/include/mitkBaseData.h

Modules/Core/include/mitkBaseGeometry.h

Modules/Core/include/mitkBaseRenderer.h

Modules/Core/include/mitkDataInteractor.h

Modules/Core/include/mitkDataNode.h

Modules/Core/include/mitkDataStorage.h

Modules/Core/include/mitkEqual.h

Modules/Core/include/mitkExtractSliceFilter2.h

Modules/Core/include/mitkIOUtil.h

Modules/Core/include/mitkImage.h

Modules/Core/include/mitkImageAccessorBase.h

Modules/Core/include/mitkImageGenerator.h

Modules/Core/include/mitkImageSource.h

Modules/Core/include/mitkImageToItk.txx

Modules/Core/include/mitkInteractionSchemeSwitcher.h

Modules/Core/include/mitkLimitedLinearUndo.h

Modules/Core/include/mitkLocalStorageHandler.h

Modules/Core/include/mitkMapper.h

Modules/Core/include/mitkMessage.h

Modules/Core/include/mitkPixelType.h

Modules/Core/include/mitkPixelTypeMultiplex.h

Modules/Core/include/mitkPixelTypeTraits.h

Modules/Core/include/mitkPointSet.h

Modules/Core/include/mitkPropertyList.h

Modules/Core/include/mitkRenderingManager.h

Modules/Core/include/mitkSliceNavigationController.h

Modules/Core/include/mitkSlicesCoordinator.h

Modules/Core/include/mitkStandaloneDataStorage.h

Modules/Core/include/mitkUtf8Util.h

Modules/Core/src/Algorithms/mitkExtractSliceFilter2.cpp

Modules/Core/src/Algorithms/mitkHistogramGenerator.cpp

Modules/Core/src/Algorithms/mitkImageSource.cpp

Modules/Core/src/Algorithms/mitkMultiComponentImageDataComparisonFilter.cpp

Modules/Core/src/Algorithms/mitkRGBToRGBACastImageFilter.cpp

Modules/Core/src/Controllers/mitkLimitedLinearUndo.cpp

Modules/Core/src/Controllers/mitkRenderingManager.cpp

Modules/Core/src/Controllers/mitkSlicesCoordinator.cpp

Modules/Core/src/DataManagement/mitkAbstractTransformGeometry.cpp

Modules/Core/src/DataManagement/mitkBaseData.cpp

Modules/Core/src/DataManagement/mitkBaseGeometry.cpp

Modules/Core/src/DataManagement/mitkDataNode.cpp

Modules/Core/src/DataManagement/mitkDataStorage.cpp

Modules/Core/src/DataManagement/mitkGeometryTransformHolder.cpp

Modules/Core/src/DataManagement/mitkImage.cpp

Modules/Core/src/DataManagement/mitkImageAccessorBase.cpp

Modules/Core/src/DataManagement/mitkImageDataItem.cpp

Modules/Core/src/DataManagement/mitkImageReadAccessor.cpp

Modules/Core/src/DataManagement/mitkImageStatisticsHolder.cpp

Modules/Core/src/DataManagement/mitkImageVtkReadAccessor.cpp

Modules/Core/src/DataManagement/mitkImageVtkWriteAccessor.cpp

Modules/Core/src/DataManagement/mitkImageWriteAccessor.cpp

Modules/Core/src/DataManagement/mitkLevelWindow.cpp

Modules/Core/src/DataManagement/mitkPlaneGeometry.cpp

Modules/Core/src/DataManagement/mitkPointSet.cpp

Modules/Core/src/DataManagement/mitkPropertyList.cpp

Modules/Core/src/DataManagement/mitkStandaloneDataStorage.cpp

Modules/Core/src/IO/mitkAbstractFileReader.cpp

Modules/Core/src/IO/mitkAbstractFileWriter.cpp

Modules/Core/src/IO/mitkCustomMimeType.cpp

Modules/Core/src/IO/mitkFileReaderSelector.cpp

Modules/Core/src/IO/mitkFileWriterSelector.cpp

Modules/Core/src/IO/mitkIOMimeTypes.cpp

Modules/Core/src/IO/mitkIOUtil.cpp

Modules/Core/src/IO/mitkItkImageIO.cpp

Modules/Core/src/IO/mitkLog.cpp

Modules/Core/src/IO/mitkPixelType.cpp

Modules/Core/src/IO/mitkRawImageFileReader.h

Modules/Core/src/IO/mitkStandardFileLocations.cpp

Modules/Core/src/IO/mitkSurfaceVtkIO.cpp

Modules/Core/src/IO/mitkUtf8Util.cpp

Modules/Core/src/Interactions/mitkDataInteractor.cpp

Modules/Core/src/Interactions/mitkDisplayActionEventBroadcast.cpp

Modules/Core/src/Interactions/mitkDisplayInteractor.cpp

Modules/Core/src/Interactions/mitkInteractionSchemeSwitcher.cpp

Modules/Core/src/Rendering/mitkBaseRenderer.cpp

Modules/Core/src/Rendering/mitkImageVtkMapper2D.cpp

Modules/Core/src/mitkCoreServices.cpp

Modules/Core/test/mitkArbitraryTimeGeometryTest.cpp

Modules/Core/test/mitkBaseGeometryTest.cpp

Modules/Core/test/mitkIOUtilTest.cpp

Modules/Core/test/mitkImageAccessorTest.cpp

Modules/Core/test/mitkImageDimensionConverterTest.cpp

Modules/Core/test/mitkImageGeneratorTest.cpp

Modules/Core/test/mitkImportItkImageTest.cpp

Modules/Core/test/mitkItkImageIOTest.cpp

Modules/Core/test/mitkLogTest.cpp

Modules/Core/test/mitkPixelTypeTest.cpp

Modules/Core/test/mitkPlanePositionManagerTest.cpp

Modules/Core/test/mitkSurfaceToImageFilterTest.cpp

Modules/Core/test/mitkTinyXMLTest.cpp

Modules/CppMicroServices/cmake/usGlobalConfig.h.in

Modules/CppMicroServices/core/src/module/usModuleManifest.cpp

Modules/CppMicroServices/core/src/util/usListenerFunctors_p.h

Modules/CppMicroServices/third_party/jsoncpp.cpp

Modules/CppMicroServices/third_party/jsoncpp.h

Modules/DICOM/CMakeLists.txt

Modules/DICOM/autoload/DICOMImageIO/include/mitkDICOMTagsOfInterestService.h

Modules/DICOM/include/mitkDICOMITKSeriesGDCMReader.h

Modules/DICOM/include/mitkDICOMTagScanner.h

Modules/DICOM/src/legacy/mitkDicomSR_LoadDICOMRGBPixel.cpp

Modules/DICOM/src/legacy/mitkDicomSR_LoadDICOMRGBPixel4D.cpp

Modules/DICOM/src/legacy/mitkDicomSR_LoadDICOMScalar.cpp

Modules/DICOM/src/legacy/mitkDicomSR_LoadDICOMScalar4D.cpp

Modules/DICOM/src/legacy/mitkDicomSeriesReader.cpp

Modules/DICOM/src/mitkDICOMITKSeriesGDCMReader.cpp

Modules/DICOM/src/mitkDICOMTagScanner.cpp

Modules/DICOM/src/mitkITKDICOMSeriesReaderHelper.cpp

Modules/DICOMTesting/include/mitkTestDICOMLoading.h

Modules/DICOMTesting/src/mitkTestDICOMLoading.cpp

Modules/DataTypesExt/include/mitkAffineBaseDataInteractor3D.h

Modules/DataTypesExt/src/mitkAffineBaseDataInteractor3D.cpp

Modules/IGT/Algorithms/mitkNavigationDataToPointSetFilter.cpp

Modules/IGT/Algorithms/mitkPivotCalibration.cpp

Modules/IGT/IO/mitkNavigationDataPlayer.h

Modules/IGT/Rendering/mitkNavigationDataSliceVisualization.cpp

Modules/IGT/Testing/mitkTrackingDeviceTest.cpp

Modules/IGT/TrackingDevices/mitkClaronTool.h

Modules/IGT/TrackingDevices/mitkClaronTrackingDevice.cpp

Modules/IGT/TrackingDevices/mitkClaronTrackingDevice.h

Modules/IGT/TrackingDevices/mitkNDITrackingDevice.cpp

Modules/IGT/TrackingDevices/mitkNDITrackingDevice.h

Modules/IGT/TrackingDevices/mitkOpenIGTLinkTrackingDevice.cpp

Modules/IGT/TrackingDevices/mitkOpenIGTLinkTrackingDevice.h

Modules/IGT/TrackingDevices/mitkOpenIGTLinkTrackingTool.h

Modules/IGT/TrackingDevices/mitkOptitrackTrackingDevice.cpp

Modules/IGT/TrackingDevices/mitkOptitrackTrackingDevice.h

Modules/IGT/TrackingDevices/mitkOptitrackTrackingTool.h

Modules/IGT/TrackingDevices/mitkTrackingDevice.cpp

Modules/IGT/TrackingDevices/mitkTrackingDevice.h

Modules/IGT/TrackingDevices/mitkTrackingTool.cpp

Modules/IGT/TrackingDevices/mitkTrackingTool.h

Modules/IGT/TrackingDevices/mitkVirtualTrackingDevice.cpp

Modules/IGT/TrackingDevices/mitkVirtualTrackingDevice.h

Modules/IGT/TrackingDevices/mitkVirtualTrackingTool.cpp

Modules/IGT/TrackingDevices/mitkVirtualTrackingTool.h

Modules/ImageDenoising/Testing/itkTotalVariationDenoisingImageFilterTest.cpp

Modules/ImageDenoising/itkLocalVariationImageFilter.txx

Modules/ImageDenoising/itkTotalVariationDenoisingImageFilter.txx

Modules/ImageDenoising/itkTotalVariationSingleIterationImageFilter.txx

Modules/ImageExtraction/mitkExtractImageFilter.cpp

Modules/ImageStatistics/Testing/mitkImageStatisticsCalculatorTest.cpp

Modules/ImageStatistics/Testing/mitkImageStatisticsTextureAnalysisTest.cpp

Modules/ImageStatistics/files.cmake

Modules/ImageStatistics/itkMultiGaussianImageSource.hxx

Modules/ImageStatistics/mitkExtendedLabelStatisticsImageFilter.h

Modules/ImageStatistics/mitkExtendedLabelStatisticsImageFilter.hxx

Modules/ImageStatistics/mitkExtendedStatisticsImageFilter.h

Modules/ImageStatistics/mitkExtendedStatisticsImageFilter.hxx

Modules/ImageStatistics/mitkHotspotMaskGenerator.cpp

Modules/ImageStatistics/mitkImageStatisticsCalculator.cpp

Modules/ImageStatistics/mitkLabelStatisticsImageFilter.h

Modules/ImageStatistics/mitkLabelStatisticsImageFilter.hxx

Modules/ImageStatistics/mitkMinMaxImageFilterWithIndex.h

Modules/ImageStatistics/mitkMinMaxImageFilterWithIndex.hxx

Modules/ImageStatistics/mitkMinMaxLabelmageFilterWithIndex.h

Modules/ImageStatistics/mitkMinMaxLabelmageFilterWithIndex.hxx

Modules/ImageStatistics/mitkPlanarFigureMaskGenerator.cpp

Modules/ImageStatistics/mitkStatisticsImageFilter.h

Modules/ImageStatistics/mitkStatisticsImageFilter.hxx

Modules/ImageStatisticsUI/Qmitk/QmitkImageStatisticsTreeModel.cpp

Modules/ImageStatisticsUI/Qmitk/QmitkImageStatisticsTreeModel.h

Modules/ImageStatisticsUI/Qmitk/QmitkIntensityProfileVisualizationWidget.cpp

Modules/ImageStatisticsUI/test/QmitkImageStatisticsDataGeneratorTest.cpp

Modules/LegacyIO/mitkImageWriter.cpp

Modules/LegacyIO/mitkItkImageFileReader.cpp

Modules/LegacyIO/mitkSurfaceVtkWriter.txx

Modules/MapperExt/src/vtkMitkGPUVolumeRayCastMapper.cpp

Modules/MatchPointRegistration/include/itkStitchImageFilter.h

Modules/MatchPointRegistration/include/itkStitchImageFilter.tpp

Modules/MatchPointRegistration/src/Helper/mitkImageStitchingHelper.cpp

Modules/ModelFit/include/itkMaskedStatisticsImageFilter.hxx

Modules/ModelFit/include/itkMultiOutputNaryFunctorImageFilter.tpp

Modules/ModelFit/include/mitkBinaryImageToLabelSetImageFilter.h

Modules/ModelFit/include/mitkModelFitFunctorBase.h

Modules/ModelFit/include/mitkModelFitInfo.h

Modules/ModelFit/src/Common/mitkBinaryImageToLabelSetImageFilter.cpp

Modules/ModelFit/src/Common/mitkTimeGridHelper.cpp

Modules/ModelFit/src/Functors/mitkModelFitFunctorBase.cpp

Modules/ModelFit/test/itkMaskedStatisticsImageFilterTest.cpp

Modules/ModelFit/test/itkMultiOutputNaryFunctorImageFilterTest.cpp

Modules/Multilabel/CMakeLists.txt

Modules/Multilabel/autoload/IO/mitkLabelSetImageIO.cpp

Modules/Multilabel/files.cmake

Modules/Multilabel/mitkLabelSetImageConverter.cpp

Modules/Multilabel/mitkLabelSetImageHelper.cpp

Modules/Multilabel/mitkLabelSetImageHelper.h

Modules/OpenCVVideoSupport/Commands/mitkGrabCutOpenCVImageFilter.cpp

Modules/OpenCVVideoSupport/Commands/mitkGrabCutOpenCVImageFilter.h

Modules/OpenCVVideoSupport/Testing/mitkOpenCVToMitkImageFilterTest.cpp

Modules/OpenCVVideoSupport/mitkOpenCVToMitkImageFilter.cpp

Modules/OpenCVVideoSupport/mitkOpenCVToMitkImageFilter.h

Modules/OpenIGTLink/Filters/mitkImageToIGTLMessageFilter.cpp

Modules/OpenIGTLink/mitkIGTLClient.cpp

Modules/OpenIGTLink/mitkIGTLDevice.cpp

Modules/OpenIGTLink/mitkIGTLDevice.h

Modules/OpenIGTLink/mitkIGTLMessageProvider.cpp

Modules/OpenIGTLink/mitkIGTLMessageProvider.h

Modules/OpenIGTLink/mitkIGTLMessageQueue.cpp

Modules/OpenIGTLink/mitkIGTLMessageQueue.h

Modules/OpenIGTLink/mitkIGTLMessageSource.cpp

Modules/OpenIGTLink/mitkIGTLMessageSource.h

Modules/OpenIGTLink/mitkIGTLServer.cpp

Modules/OpenIGTLink/mitkIGTLServer.h

Modules/PlanarFigure/include/mitkPlanarFigureInteractor.h

Modules/PlanarFigure/src/Interactions/mitkPlanarFigureInteractor.cpp

Modules/Python/autoload/PythonService/mitkPythonService.cpp

Modules/QtWidgets/include/QmitkDataStorageTableModel.h

Modules/QtWidgets/include/QmitkPropertiesTableModel.h

Modules/QtWidgets/src/QmitkIOUtil.cpp

Modules/QtWidgetsExt/src/QmitkAboutDialog.cpp

Modules/RT/src/mitkDoseImageVtkMapper2D.cpp

Modules/Segmentation/Algorithms/itkAdaptiveThresholdIterator.h

Modules/Segmentation/Algorithms/itkAdaptiveThresholdIterator.txx

Modules/Segmentation/Algorithms/itkContourExtractor2DImageFilter.h

Modules/Segmentation/Algorithms/itkContourExtractor2DImageFilter.txx

Modules/Segmentation/Algorithms/mitkCorrectorAlgorithm.cpp

Modules/Segmentation/Algorithms/mitkDiffImageApplier.cpp

Modules/Segmentation/Algorithms/mitkSurfaceStampImageFilter.cpp

Modules/Segmentation/CMakeLists.txt

Modules/Segmentation/DataManagement/mitkExtrudedContour.cpp

Modules/Segmentation/DataManagement/mitkExtrudedContour.h

Modules/Segmentation/Interactions/mitkBinaryThresholdBaseTool.cpp

Modules/Segmentation/Interactions/mitkFastMarchingTool.cpp

Modules/Segmentation/Interactions/mitkFeedbackContourTool.cpp

Modules/Segmentation/Interactions/mitkPaintbrushTool.cpp

Modules/Segmentation/Interactions/mitkTool.cpp

Modules/Segmentation/Interactions/mitkToolEvents.h

Modules/Segmentation/Interactions/mitkWatershedTool.cpp

Modules/Segmentation/Interactions/mitknnUnetTool.cpp

Modules/Segmentation/Rendering/mitkContourSetVtkMapper3D.cpp

Modules/Segmentation/Resources/AI_48x48.png

Modules/Segmentation/Resources/AI_Cursor_32x32.png

Modules/Segmentation/Resources/Icons.svg

Modules/Segmentation/SegmentationUtilities/BooleanOperations/mitkBooleanOperation.cpp

Modules/Segmentation/files.cmake

Modules/SegmentationUI/Qmitk/QmitkLabelSetWidget.cpp

Modules/SegmentationUI/Qmitk/QmitkLabelSetWidget.h

Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.cpp

Modules/SegmentationUI/resources/NewLabel_48x48.png

Modules/SegmentationUI/resources/NewSegmentation_48x48.png

Modules/SegmentationUI/resources/SegmentationUI.qrc

Modules/SurfaceInterpolation/mitkComputeContourSetNormalsFilter.cpp

Modules/ToFHardware/mitkToFCameraDevice.cpp

Modules/ToFHardware/mitkToFCameraDevice.h

Modules/ToFHardware/mitkToFCameraMITKPlayerDevice.cpp

Modules/ToFHardware/mitkToFCameraMITKPlayerDevice.h

Modules/ToFHardware/mitkToFImageRecorder.cpp

Modules/ToFHardware/mitkToFImageRecorder.h

Modules/ToFHardware/mitkToFNrrdImageWriter.cpp

Modules/ToFProcessing/mitkToFCompositeFilter.cpp

Modules/TubeGraph/include/mitkTubeGraphDataInteractor.h

Modules/TubeGraph/src/Interactions/mitkTubeGraphDataInteractor.cpp

Modules/US/USFilters/mitkUSImageSource.cpp

Modules/US/USFilters/mitkUSImageSource.h

Modules/US/USFilters/mitkUSImageVideoSource.cpp

Modules/US/USModel/mitkUSDevice.cpp

Modules/US/USModel/mitkUSDevice.h

Modules/US/USModel/mitkUSIGTLDevice.cpp

Modules/US/USModel/mitkUSVideoDevice.cpp

Modules/XNAT/src/QmitkXnatTreeModel.cpp

Plugins/org.blueberry.core.runtime/src/berryDebugUtil.cpp

Plugins/org.blueberry.ui.qt/src/internal/berryEditorHistoryItem.cpp

Plugins/org.blueberry.ui.qt/src/internal/berryEditorRegistry.h

Plugins/org.blueberry.ui.qt/src/internal/berryPerspective.cpp

Plugins/org.blueberry.ui.qt/src/internal/berryPerspectiveHelper.h

Plugins/org.blueberry.ui.qt/src/internal/berryWorkbenchPage.h

Plugins/org.mitk.gui.qt.basicimageprocessing/CMakeLists.txt

Plugins/org.mitk.gui.qt.ext/src/QmitkExtWorkbenchWindowAdvisor.cpp

Plugins/org.mitk.gui.qt.flowapplication/src/internal/QmitkFlowApplicationWorkbenchWindowAdvisor.cpp

Plugins/org.mitk.gui.qt.igt.app.ultrasoundtrackingnavigation/CMakeLists.txt

Plugins/org.mitk.gui.qt.imagecropper/src/internal/QmitkImageCropperView.cpp

Plugins/org.mitk.gui.qt.imagenavigator/src/internal/QmitkImageNavigatorView.cpp

Plugins/org.mitk.gui.qt.matchpoint.visualizer/src/internal/QmitkMatchPointRegistrationVisualizer.cpp

Plugins/org.mitk.gui.qt.multilabelsegmentation/files.cmake

Plugins/org.mitk.gui.qt.multilabelsegmentation/plugin.xml

Plugins/org.mitk.gui.qt.multilabelsegmentation/resources/NewLabel_48x48.png

Plugins/org.mitk.gui.qt.multilabelsegmentation/resources/NewSegmentationSession_48x48.png

Plugins/org.mitk.gui.qt.multilabelsegmentation/resources/multilabelsegmentation.qrc

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/QmitkMultiLabelSegmentationPreferencePage.cpp

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/QmitkMultiLabelSegmentationPreferencePage.h

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkCreateMultiLabelPresetAction.cpp

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkCreateMultiLabelPresetAction.h

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkCreateMultiLabelSegmentationAction.cpp

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkLoadMultiLabelPresetAction.cpp

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkLoadMultiLabelPresetAction.h

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkMultiLabelSegmentationControls.ui

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkMultiLabelSegmentationView.cpp

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkMultiLabelSegmentationView.h

Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation.dox

Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation_nnUnetTool.png

Plugins/org.mitk.gui.qt.segmentation/files.cmake

Plugins/org.mitk.gui.qt.segmentation/plugin.xml

Plugins/org.mitk.gui.qt.segmentation/src/QmitkSegmentationPreferencePage.cpp

Plugins/org.mitk.gui.qt.segmentation/src/QmitkSegmentationPreferencePage.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/Common/QmitkLabelsWidget.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/Common/QmitkLabelsWidget.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/Common/QmitkLabelsWidgetControls.ui

Plugins/org.mitk.gui.qt.segmentation/src/internal/Common/QmitkLayersWidget.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/Common/QmitkLayersWidget.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/Common/QmitkLayersWidgetControls.ui

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkLoadMultiLabelPresetAction.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkLoadMultiLabelPresetAction.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSaveMultiLabelPresetAction.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSaveMultiLabelPresetAction.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationControls.ui

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationViewControls.ui

Plugins/org.mitk.gui.qt.segmentation/src/internal/SegmentationUtilities/ImageMasking/QmitkImageMaskingWidget.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/mitkPluginActivator.cpp

SuperBuild.cmake