Description

mitkItkImageFileReader.cpp

Core/

Code/

DataManagement/

mitkDataNode.cpp

mitkDataNode.h

IO/

mitkImageWriter.cpp

Interactions/

StateMachine.xml

mitkDisplayVectorInteractorScroll.cpp

mitkDisplayVectorInteractorScroll.h

mitkInteractionConst.h

Rendering/

mitkBaseRenderer.cpp

mitkImageVtkMapper2D.cpp

mitkRenderWindowBase.cpp

Service/

mitkModule.cpp

mitkModule.h

mitkModulePrivate.cpp

mitkModuleRegistry.cpp

mitkStaticInit.h

Documentation/

Doxygen/

Applications.dox

Development.dox

DocumentationGuide.dox

UserManual

	Documentation/	Doxygen/
	Modules/	Bundles/

			UserManual/
	org.mitk.gui.qt.diffusionimagingapp/	documentation/	UserManual/

Crosshair_Modes.png

GUI.png

QmitkFiberBundleDeveloperView.cpp

Views_Choices.png

Window_Dropdown.png

			UserManual/
	org.mitk.gui.qt.extapplication/	documentation/	UserManual/

GUI_Commented.png

	MITKUserManual.dox
	QmitkExtapplicationUserManual.dox

Modules/

Bundles/

org.mitk.gui.qt.diffusionimaging/

src/

internal/

QmitkFiberBundleDeveloperView.h

QmitkFiberBundleDeveloperViewControls.ui

QmitkFiberBundleOperationsView.cpp

QmitkFiberBundleOperationsView.h

QmitkPartialVolumeAnalysisView.cpp

QmitkTensorReconstructionView.cpp

QmitkTensorReconstructionView.h

QmitkTensorReconstructionViewControls.ui

org.mitk.gui.qt.diffusionimagingapp/

documentation/

UserManual/

QmitkDiffusionImagingAppUserManual.dox

Show_Views.png

QmitkDTIAtlasAppUserManual.dox

resources/

welcome/

pics/

06aconnectomics.png

06connectomics.png

org.mitk.gui.qt.dtiatlasapp/

documentation/

UserManual/

Show_Views.png

QmitkExtapplicationUserManual.dox

org.mitk.gui.qt.extapplication/

documentation/

UserManual/

Crosshair_Modes.png

GUI.png

GUI_Commented.png

QmitkMITKIGTTrackingToolboxViewControls.ui

Views_Choices.png

Window_Dropdown.png

org.mitk.gui.qt.igttrackingtoolbox/

src/

internal/

org.mitk.gui.qt.segmentation/

src/

internal/

QmitkCreatePolygonModelAction.cpp

QmitkCreatePolygonModelAction.h

QmitkThresholdAction.cpp

QmitkThresholdAction.h

mitkPluginActivator.cpp

mitkPluginActivator.h

DiffusionImaging/

Algorithms/

itkTensorImageToDiffusionImageFilter.txx

itkTensorImageToQBallImageFilter.h

itkTensorImageToQBallImageFilter.txx

mitkPartialVolumeAnalysisHistogramCalculator.cpp

mitkPartialVolumeAnalysisHistogramCalculator.h

IODataStructures/

FiberBundleX/

mitkFiberBundleXThreadMonitor.cpp

mitkFiberBundleXThreadMonitor.h

PlanarFigureComposite/

mitkPlanarFigureComposite.cpp

QBallImages/

mitkNrrdQBallImageReader.cpp

TensorImages/

mitkNrrdTensorImageReader.cpp

mitkNrrdTensorImageReader.h

Rendering/

mitkFiberBundleXThreadMonitorMapper3D.cpp

mitkFiberBundleXThreadMonitorMapper3D.h

Tractography/

itkGibbsTrackingFilter.h

IGT/

IGTTrackingDevices/

mitkNDITrackingDevice.cpp

mitkTrackingDevice.cpp

Testing/

mitkClaronTrackingDeviceTest.cpp

mitkTrackingDeviceSourceTest.cpp

IGTUI/

Qmitk/

QmitkNDIConfigurationWidget.cpp

QmitkNDIConfigurationWidget.h

QmitkNDIConfigurationWidget.ui

QmitkUpdateTimerWidget.cpp

MitkExt/

Algorithms/

mitkShowSegmentationAsSmoothedSurface.cpp

Controllers/

mitkToolManager.cpp

Interactions/

mitkBinaryThresholdTool.cpp

mitkBinaryThresholdTool.h

mitkSurfaceDeformationInteractor3D.cpp

PlanarFigure/

Interactions/

mitkPlanarFigureInteractor.cpp

mitkPlanarFigureInteractor.h

mitkPlanarFigureMapper2D.cpp

Rendering/

QmitkBinaryThresholdToolGUI.cpp

QmitkExt/

QmitkBinaryThresholdToolGUI.h

ToFHardware/

mitkToFCameraMESADevice.cpp

mitkToFCameraPMDDevice.cpp

mitkToFCameraPMDRawDataDevice.cpp

mitkTestingConfig.h.in

rMITKbea8cb729fc9

.gitignore

Applications/PluginGenerator/CMakeLists.txt

Applications/PluginGenerator/Changelog.txt

Applications/PluginGenerator/PluginGenerator.cpp

Applications/PluginGenerator/PluginGeneratorConfig.h.in

Applications/PluginGenerator/PluginTemplate/documentation/Manual

Applications/PluginGenerator/PluginTemplate/documentation/Manual/Manual.dox

Applications/PluginGenerator/PluginTemplate/documentation/Manual/icon.png

Applications/PluginGenerator/PluginTemplate/documentation/UserManual/Manual.dox

Applications/PluginGenerator/PluginTemplate/documentation/UserManual/icon.xpm

Applications/PluginGenerator/ProjectTemplate/CMakeLists.txt

Applications/PluginGenerator/SetupPackaging.cmake

Applications/PluginGenerator/plugin_template.qrc

CMake/mitkTestProjectTemplate.cmake

Core/Code/DataManagement/mitkDataNode.cpp

Core/Code/DataManagement/mitkDataNode.h

Core/Code/IO/mitkImageWriter.cpp

Core/Code/IO/mitkItkImageFileReader.cpp

Core/Code/Interactions/StateMachine.xml

Core/Code/Interactions/mitkDisplayVectorInteractorScroll.cpp

Core/Code/Interactions/mitkDisplayVectorInteractorScroll.h

Core/Code/Interactions/mitkInteractionConst.h

Core/Code/Rendering/mitkBaseRenderer.cpp

Core/Code/Rendering/mitkImageVtkMapper2D.cpp

Core/Code/Rendering/mitkRenderWindowBase.cpp

Core/Code/Service/mitkModule.cpp

Core/Code/Service/mitkModule.h

Core/Code/Service/mitkModulePrivate.cpp

Core/Code/Service/mitkModuleRegistry.cpp

Core/Code/Service/mitkStaticInit.h

Documentation/Doxygen/Applications.dox

Documentation/Doxygen/Development.dox

Documentation/Doxygen/DocumentationGuide.dox

Documentation/Doxygen/UserManual/Crosshair_Modes.png

Documentation/Doxygen/UserManual/GUI.png

Documentation/Doxygen/UserManual/GUI_Commented.png

Documentation/Doxygen/UserManual/MITKUserManual.dox

Documentation/Doxygen/UserManual/Top_Right_Corner_Menu.png

Documentation/Doxygen/UserManual/Views_Choices.png

Documentation/Doxygen/UserManual/Window_Dropdown.png

Modules/Bundles/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberBundleDeveloperView.cpp

Modules/Bundles/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberBundleDeveloperView.h

Modules/Bundles/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberBundleDeveloperViewControls.ui

Modules/Bundles/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberBundleOperationsView.cpp

Modules/Bundles/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberBundleOperationsView.h

Modules/Bundles/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkPartialVolumeAnalysisView.cpp

Modules/Bundles/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkTensorReconstructionView.cpp

Modules/Bundles/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkTensorReconstructionView.h

Modules/Bundles/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkTensorReconstructionViewControls.ui

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Crosshair_Modes.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/GUI.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/GUI_Commented.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Open_Perspective.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/QmitkDiffusionImagingAppUserManual.dox

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Show_Views.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Top_Right_Corner_Menu.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Views_Choices.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Welcome.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Window_Dropdown.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/theme_black.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/theme_default.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06aconnectomics.png

Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06connectomics.png

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Crosshair_Modes.png

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/GUI.png

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/GUI_Commented.png

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Open_Perspective.png

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/QmitkDTIAtlasAppUserManual.dox

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Show_Views.png

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Top_Right_Corner_Menu.png

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Views_Choices.png

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Welcome.png

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Window_Dropdown.png

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/theme_black.png

Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/theme_default.png

Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Crosshair_Modes.png

Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/GUI.png

Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/GUI_Commented.png

Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/QmitkExtapplicationUserManual.dox

Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Top_Right_Corner_Menu.png

Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Views_Choices.png

Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Window_Dropdown.png

Modules/Bundles/org.mitk.gui.qt.igttrackingtoolbox/src/internal/QmitkMITKIGTTrackingToolboxViewControls.ui

Modules/Bundles/org.mitk.gui.qt.segmentation/src/internal/QmitkCreatePolygonModelAction.cpp

Modules/Bundles/org.mitk.gui.qt.segmentation/src/internal/QmitkCreatePolygonModelAction.h

Modules/Bundles/org.mitk.gui.qt.segmentation/src/internal/QmitkThresholdAction.cpp

Modules/Bundles/org.mitk.gui.qt.segmentation/src/internal/QmitkThresholdAction.h

Modules/Bundles/org.mitk.gui.qt.segmentation/src/internal/mitkPluginActivator.cpp

Modules/Bundles/org.mitk.gui.qt.segmentation/src/internal/mitkPluginActivator.h

Modules/DiffusionImaging/Algorithms/itkTensorImageToDiffusionImageFilter.txx

Modules/DiffusionImaging/Algorithms/itkTensorImageToQBallImageFilter.h

Modules/DiffusionImaging/Algorithms/itkTensorImageToQBallImageFilter.txx

Modules/DiffusionImaging/Algorithms/mitkPartialVolumeAnalysisHistogramCalculator.cpp

Modules/DiffusionImaging/Algorithms/mitkPartialVolumeAnalysisHistogramCalculator.h

Modules/DiffusionImaging/IODataStructures/FiberBundleX/mitkFiberBundleXThreadMonitor.cpp

Modules/DiffusionImaging/IODataStructures/FiberBundleX/mitkFiberBundleXThreadMonitor.h

Modules/DiffusionImaging/IODataStructures/PlanarFigureComposite/mitkPlanarFigureComposite.cpp

Modules/DiffusionImaging/IODataStructures/QBallImages/mitkNrrdQBallImageReader.cpp

Modules/DiffusionImaging/IODataStructures/TensorImages/mitkNrrdTensorImageReader.cpp

Modules/DiffusionImaging/IODataStructures/TensorImages/mitkNrrdTensorImageReader.h

Modules/DiffusionImaging/Rendering/mitkFiberBundleXThreadMonitorMapper3D.cpp

Modules/DiffusionImaging/Rendering/mitkFiberBundleXThreadMonitorMapper3D.h

Modules/DiffusionImaging/Tractography/itkGibbsTrackingFilter.h

Modules/IGT/IGTTrackingDevices/mitkNDITrackingDevice.cpp

Modules/IGT/IGTTrackingDevices/mitkTrackingDevice.cpp

Modules/IGT/Testing/mitkClaronTrackingDeviceTest.cpp

Modules/IGT/Testing/mitkTrackingDeviceSourceTest.cpp

Modules/IGTUI/Qmitk/QmitkNDIConfigurationWidget.cpp

Modules/IGTUI/Qmitk/QmitkNDIConfigurationWidget.h

Modules/IGTUI/Qmitk/QmitkNDIConfigurationWidget.ui

Modules/IGTUI/Qmitk/QmitkUpdateTimerWidget.cpp

Modules/MitkExt/Algorithms/mitkShowSegmentationAsSmoothedSurface.cpp

Modules/MitkExt/Controllers/mitkToolManager.cpp

Modules/MitkExt/Interactions/mitkBinaryThresholdTool.cpp

Modules/MitkExt/Interactions/mitkBinaryThresholdTool.h

Modules/MitkExt/Interactions/mitkSurfaceDeformationInteractor3D.cpp

Modules/PlanarFigure/Interactions/mitkPlanarFigureInteractor.cpp

Modules/PlanarFigure/Interactions/mitkPlanarFigureInteractor.h

Modules/PlanarFigure/Rendering/mitkPlanarFigureMapper2D.cpp

Modules/QmitkExt/QmitkBinaryThresholdToolGUI.cpp

Modules/QmitkExt/QmitkBinaryThresholdToolGUI.h

Modules/ToFHardware/mitkToFCameraMESADevice.cpp

Modules/ToFHardware/mitkToFCameraPMDDevice.cpp

Modules/ToFHardware/mitkToFCameraPMDRawDataDevice.cpp