The IndexToWorld(from, to) method accepts only mitk::Point3D ( for both parameters from, to), whereas the GetPixelByIndex( pt ) accepts only mitk::Index3D as parameter ( it has accepted mitk::Point3D until bugfix for T4692).
All transforms ( IndexToWorld, WorldToIndex ) should either take the respective types as parameters, or allow both mitk::Point3D and mitk::Index3D.