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Apr 4 2018

groehl committed rMITK2c94ff7afd1b: Merge branch 'T23431-MemoryConsumptionBug' into T24512-SetupPASimulationPipeline (authored by groehl).
Merge branch 'T23431-MemoryConsumptionBug' into T24512-SetupPASimulationPipeline
Apr 4 2018, 4:16 PM
groehl committed rMITK95c8d57e15f7: add test that reproduces bug. Some general changes to the phantom tissue… (authored by groehl).
add test that reproduces bug. Some general changes to the phantom tissue…
Apr 4 2018, 4:04 PM
groehl added a comment to T23431: [Photoacoustics] Include real partial volume effects into simulation.

Pushed new branch T23431-MemoryConsumptionBug.

Apr 4 2018, 4:04 PM · IMSY, Photoacoustics, MITK
groehl committed rMITK0a624b7bb266: fix mitkIOUtil call (authored by groehl).
fix mitkIOUtil call
Apr 4 2018, 4:01 PM
groehl added a member for Photoacoustics: holzwart.
Apr 4 2018, 3:28 PM
groehl committed rMITK23f9e9b60ff3: Merge branch 'T23431-SimulatePartialVolumeEffects' into T24512… (authored by groehl).
Merge branch 'T23431-SimulatePartialVolumeEffects' into T24512…
Apr 4 2018, 11:52 AM

Mar 26 2018

groehl closed T24088: Fix Photoacoustic Time Measurement Test Bug as Resolved.
Mar 26 2018, 1:17 PM · MITK
groehl closed T23474: Photoacoustic vessel creation does not behave the same in different resolutions as Resolved.
Mar 26 2018, 1:17 PM · IMSY, Photoacoustics, MITK

Mar 9 2018

groehl triaged T24381: Saving of more than 2^29 double values leads to crash. as High priority.
Mar 9 2018, 5:01 PM · Auto-closed, MITK
groehl committed rMITK372f15a6b0eb: create a script to simulate the in vitro phantom (authored by groehl).
create a script to simulate the in vitro phantom
Mar 9 2018, 10:31 AM

Mar 8 2018

groehl committed rMITKda1a30bbb208: add additional verbose IO debug output (authored by groehl).
add additional verbose IO debug output
Mar 8 2018, 1:34 PM
groehl added a comment to T24286: Image/PeakImage conflict when loading MITK sessions due to Diffusion Core.

We also have creashes with nrrd images containing optical properties (these are basically stored as 4D/3D+t images without any specific typing and the rule described above also comes into action). In our case, if using a commandline structure, images are imported as PeakImages per default causing crashes.

Mar 8 2018, 11:44 AM · MITK (2018-04)

Mar 1 2018

groehl committed rMITKf04993a153de: tissue batch generator for ce-qpai rebuttal (authored by groehl).
tissue batch generator for ce-qpai rebuttal
Mar 1 2018, 4:22 PM

Jan 19 2018

groehl added a comment to T24088: Fix Photoacoustic Time Measurement Test Bug.

Pushed new branch T24088-FixTimeTest.

Jan 19 2018, 1:58 PM · MITK
groehl triaged T24088: Fix Photoacoustic Time Measurement Test Bug as Low priority.
Jan 19 2018, 1:57 PM · MITK

Dec 19 2017

groehl committed rMITKfe57ed978587: add multi and singlevessel parameters (authored by groehl).
add multi and singlevessel parameters
Dec 19 2017, 4:26 PM

Nov 23 2017

groehl created T23829: [BMC] Challenge Proposals: No field validations.
Nov 23 2017, 3:04 PM · Restricted Project
groehl created T23828: [BMC] In Tasks some of the descriptions might not be clear.
Nov 23 2017, 2:53 PM · Restricted Project
groehl created T23827: [BMC] Number of training cases can be a string.
Nov 23 2017, 2:51 PM · Restricted Project
groehl created T23826: [BMC] Imaging Modalities in a task is missing photoacoustic tomography.
Nov 23 2017, 2:49 PM · Restricted Project
groehl created T23824: [BMC] In dropdown combo boxes you cannot see the full item name.
Nov 23 2017, 2:41 PM · Restricted Project
groehl added a project to T23819: [BMC] Registering title options very limited: Restricted Project.
Nov 23 2017, 2:38 PM · Restricted Project
groehl added a project to T23821: [BMC] Profile Info does not show optional inputs: Restricted Project.
Nov 23 2017, 2:38 PM · Restricted Project
groehl created T23822: [BMC] You can enter a phone number with text characters.
Nov 23 2017, 2:37 PM · Restricted Project
groehl created T23821: [BMC] Profile Info does not show optional inputs.
Nov 23 2017, 2:35 PM · Restricted Project
groehl created T23819: [BMC] Registering title options very limited.
Nov 23 2017, 2:31 PM · Restricted Project

Oct 16 2017

groehl closed T23431: [Photoacoustics] Include real partial volume effects into simulation as Resolved.
Oct 16 2017, 4:30 PM · IMSY, Photoacoustics, MITK

Oct 6 2017

groehl committed rMITKf6555f7248ab: implemented batch generation of tissues and integrated simulation (authored by groehl).
implemented batch generation of tissues and integrated simulation
Oct 6 2017, 3:54 PM
groehl committed rMITK7d951ccb25e7: fix a bug, where some vessels would not be simulated due to new out of bounds… (authored by groehl).
fix a bug, where some vessels would not be simulated due to new out of bounds…
Oct 6 2017, 11:58 AM
groehl committed rMITK97be7d190ce5: add empty TissueBatchGenerator. (authored by groehl).
add empty TissueBatchGenerator.
Oct 6 2017, 11:58 AM
groehl committed rMITK945aca009e7a: Vessel generator will now generate the same vessels independent of the voxel… (authored by groehl).
Vessel generator will now generate the same vessels independent of the voxel…
Oct 6 2017, 10:14 AM
groehl committed rMITK9c92b40fd0a8: Merge branch 'T23431-SimulatePartialVolumeEffects' of ssh://phabricator.mitk. (authored by groehl).
Merge branch 'T23431-SimulatePartialVolumeEffects' of ssh://phabricator.mitk.
Oct 6 2017, 10:14 AM
groehl committed rMITK2cba5f44e22e: make vessel generation independent of resolution - add explicit spacing… (authored by groehl).
make vessel generation independent of resolution - add explicit spacing…
Oct 6 2017, 10:14 AM

Oct 2 2017

groehl committed rMITKbff1cc6c72df: implemented a gaussian resampling from 10x the original resolution (authored by groehl).
implemented a gaussian resampling from 10x the original resolution
Oct 2 2017, 5:03 PM
groehl added a comment to T23431: [Photoacoustics] Include real partial volume effects into simulation.

The former implementation of vessels "dragged around" spheroids potentially considering each voxel multiple times. When just using partial volume spheres the same way, the results will not be correct if voxels are considered multiple times.

Oct 2 2017, 2:10 PM · IMSY, Photoacoustics, MITK
groehl committed rMITK89c489d3075d: first construction of how to implement a rescaling version of the partial… (authored by groehl).
first construction of how to implement a rescaling version of the partial…
Oct 2 2017, 2:06 PM
groehl committed rMITKb9b607ec93fe: it kinda works, but some handcrafting had to be done. - not scientifically… (authored by groehl).
it kinda works, but some handcrafting had to be done. - not scientifically…
Oct 2 2017, 12:54 PM
groehl created T23474: Photoacoustic vessel creation does not behave the same in different resolutions.
Oct 2 2017, 12:03 PM · IMSY, Photoacoustics, MITK

Sep 29 2017

groehl updated subscribers of T23443: Basic image processing plugin: error in processing of double/float images.
Sep 29 2017, 3:53 PM · Auto-closed, Restricted Project, MITK
groehl committed rMITKdb3540d0c71d: create a quick and dirty working version - please refactor now (authored by groehl).
create a quick and dirty working version - please refactor now
Sep 29 2017, 3:53 PM
groehl added a comment to T23443: Basic image processing plugin: error in processing of double/float images.

Pushed new branch T23443-FixBasicImageProcessingSubtraction.

Sep 29 2017, 3:53 PM · Auto-closed, Restricted Project, MITK
groehl claimed T23443: Basic image processing plugin: error in processing of double/float images.
Sep 29 2017, 3:02 PM · Auto-closed, Restricted Project, MITK
groehl added a comment to T19768: VideoPlayer plug-in does not play videos.

installing all 4 packages solved the problem :)

Sep 29 2017, 2:55 PM · MITK (2016-11), Bugzilla
groehl awarded T19768: VideoPlayer plug-in does not play videos a Party Time token.
Sep 29 2017, 2:55 PM · MITK (2016-11), Bugzilla
groehl closed T23424: Remove photoacousticsimulation boost dependency as Resolved.
Sep 29 2017, 1:45 PM · Photoacoustics, MITK
groehl claimed T23424: Remove photoacousticsimulation boost dependency.
Sep 29 2017, 1:45 PM · Photoacoustics, MITK
groehl closed T19530: Live Wire control point modification not possible as Invalid.

works on linux as well.
Resolve as invalid -> could not reproduce.

Sep 29 2017, 1:44 PM · Restricted Project, Bugzilla, MITK
groehl added a comment to T19530: Live Wire control point modification not possible.

works fine on windows with current master

Sep 29 2017, 1:40 PM · Restricted Project, Bugzilla, MITK
groehl committed rMITK2c86f18140c3: commented out unused parameter - it is necessary to enable automatic calling of… (authored by groehl).
commented out unused parameter - it is necessary to enable automatic calling of…
Sep 29 2017, 1:37 PM
groehl closed T23169: VideoPlayer Slider does not jump to specific mouse position as Resolved.
Sep 29 2017, 1:21 PM · Restricted Project, MITK
groehl closed T20043: Progress slider of VideoPlayer plug-in does not move as Resolved.

progress slider moves now.
However video playback doesn't work with linux see
{T23459}

Sep 29 2017, 1:21 PM · Restricted Project, MITK
groehl committed rMITK9cc80cc35f8c: Merge branch 'T20043-VideoPlayerIntegration' (authored by groehl).
Merge branch 'T20043-VideoPlayerIntegration'
Sep 29 2017, 1:19 PM
groehl committed rMITKb07404df4899: add method to listen to value changes on VideoProgressSlider - then adjust… (authored by groehl).
add method to listen to value changes on VideoProgressSlider - then adjust…
Sep 29 2017, 1:18 PM
groehl added a comment to T23169: VideoPlayer Slider does not jump to specific mouse position.

slider jumps to specific location in MIDDLE mouse button.
Slider increments/decrements by 10% video length on LEFT mouse button. RIGHT mouse button has no functionality on slider.

Sep 29 2017, 11:25 AM · Restricted Project, MITK
groehl committed rMITKf950e3b7f823: first attempt. I know this is a bad description (authored by groehl).
first attempt. I know this is a bad description
Sep 29 2017, 10:11 AM

Sep 27 2017

groehl added a comment to T23431: [Photoacoustics] Include real partial volume effects into simulation.

Pushed new branch T23431-PartialVolumeEffects.

Sep 27 2017, 7:36 PM · IMSY, Photoacoustics, MITK

Sep 26 2017

groehl committed rMITK9e5808590abd: UI changes following the vessel refactoring - remove gaussian blur from plugin… (authored by groehl).
UI changes following the vessel refactoring - remove gaussian blur from plugin…
Sep 26 2017, 5:58 PM
groehl committed rMITK113a1fb3b1c6: include first attempt at partial volume effect around spheres - lower min… (authored by groehl).
include first attempt at partial volume effect around spheres - lower min…
Sep 26 2017, 4:50 PM
groehl committed rMITK683660012efd: fix crash on startup - nullptr dereference in std::string constructor (authored by groehl).
fix crash on startup - nullptr dereference in std::string constructor
Sep 26 2017, 10:40 AM
groehl added a comment to T23431: [Photoacoustics] Include real partial volume effects into simulation.

Pushed new branch T23431-SimulatePartialVolumeEffects.

Sep 26 2017, 10:40 AM · IMSY, Photoacoustics, MITK

Sep 25 2017

groehl moved T23431: [Photoacoustics] Include real partial volume effects into simulation from Backlog to wip on the Photoacoustics board.
Sep 25 2017, 4:47 PM · IMSY, Photoacoustics, MITK
groehl created T23431: [Photoacoustics] Include real partial volume effects into simulation.
Sep 25 2017, 4:46 PM · IMSY, Photoacoustics, MITK
groehl closed T23425: Fix PhotoacousticsLib tests in Ubuntu as Resolved.

Tests are running on windows and on Ubuntu 16.04 virtual machine.

Sep 25 2017, 4:15 PM · Photoacoustics, MITK
groehl committed rMITK253426268a76: remove unnecessary debug output - from test case and on construction of object (authored by groehl).
remove unnecessary debug output - from test case and on construction of object
Sep 25 2017, 4:13 PM
groehl committed rMITKce36bc901bf6: fix linux build error (authored by groehl).
fix linux build error
Sep 25 2017, 4:13 PM
groehl committed rMITK4a3c581d8d36: implement a more generalized version of look for folder method (authored by groehl).
implement a more generalized version of look for folder method
Sep 25 2017, 11:32 AM
groehl committed rMITK1603bf765217: adjusted MCHandler test to changes (authored by groehl).
adjusted MCHandler test to changes
Sep 25 2017, 11:32 AM
groehl committed rMITKa749b58fd5fd: fix constructor calling - add equal method - add get methods for fields (authored by groehl).
fix constructor calling - add equal method - add get methods for fields
Sep 25 2017, 11:32 AM
groehl added a comment to T23425: Fix PhotoacousticsLib tests in Ubuntu.

Pushed new branch T23425-FixTestsOnUbuntu.

Sep 25 2017, 11:32 AM · Photoacoustics, MITK
groehl created T23425: Fix PhotoacousticsLib tests in Ubuntu.
Sep 25 2017, 8:51 AM · Photoacoustics, MITK

Sep 22 2017

groehl committed rMITKf40093234866: replace char array with std string (authored by groehl).
replace char array with std string
Sep 22 2017, 5:14 PM
groehl added a comment to T23424: Remove photoacousticsimulation boost dependency.

Pushed new branch T23424-FixPluginWarningsInPhotoacousticPlugin.

Sep 22 2017, 5:13 PM · Photoacoustics, MITK
groehl committed rMITK77bfbe190ff2: Try to fix last compiler warnings - forwardslash and backwardslash replacement (authored by groehl).
Try to fix last compiler warnings - forwardslash and backwardslash replacement
Sep 22 2017, 5:03 PM
groehl added a comment to T23424: Remove photoacousticsimulation boost dependency.

Pushed new branch T23424-FixLinuxCompileWarningsPart2.

Sep 22 2017, 5:03 PM · Photoacoustics, MITK
groehl committed rMITKe8437d96685c: fix compile errors (authored by groehl).
fix compile errors
Sep 22 2017, 4:47 PM
groehl added a comment to T23424: Remove photoacousticsimulation boost dependency.

Pushed new branch T23424-FixLinuxCompileWarnings.

Sep 22 2017, 4:47 PM · Photoacoustics, MITK
groehl committed rMITKb31d1f5ecf5f: remove all boost dependencies from photoacoustics lib (authored by groehl).
remove all boost dependencies from photoacoustics lib
Sep 22 2017, 4:12 PM
groehl added a comment to T23424: Remove photoacousticsimulation boost dependency.

Pushed new branch T23424-FixBoostCompileErrors.

Sep 22 2017, 4:12 PM · Photoacoustics, MITK
groehl created T23424: Remove photoacousticsimulation boost dependency.
Sep 22 2017, 3:07 PM · Photoacoustics, MITK
groehl closed T23423: Move photoacoustic simulation plugin and module into MITK master as Resolved.
Sep 22 2017, 11:07 AM · Photoacoustics, MITK
groehl committed rMITK5e6f7f68277f: adjusted default colors of icon such that they work with darktheme (authored by groehl).
adjusted default colors of icon such that they work with darktheme
Sep 22 2017, 11:05 AM
groehl committed rMITK2db7a576e20a: copy code from cami experimental - everything regarding simulation - adjusted… (authored by groehl).
copy code from cami experimental - everything regarding simulation - adjusted…
Sep 22 2017, 10:57 AM
groehl added a comment to T23423: Move photoacoustic simulation plugin and module into MITK master.

Pushed new branch T23423-IntegratePhotoacousticSimulationIntoMaster.

Sep 22 2017, 10:57 AM · Photoacoustics, MITK
groehl created T23423: Move photoacoustic simulation plugin and module into MITK master.
Sep 22 2017, 10:52 AM · Photoacoustics, MITK

Sep 15 2017

groehl added a comment to T22593: Update the MitkMultilabelTestDriver.

Current code coverage of the test cases is about 47% :/

  • 80% in the IO submodule and 40% in the main module
Sep 15 2017, 3:34 PM · MITK

Sep 12 2017

groehl added a watcher for IMSY: groehl.
Sep 12 2017, 9:00 AM

Aug 3 2017

groehl updated the image for Photoacoustics from F844851: profile to F844917: profile.
Aug 3 2017, 6:58 PM
groehl added a watcher for Photoacoustics: groehl.
Aug 3 2017, 3:40 PM
groehl updated the image for Photoacoustics from F792729: profile to F844851: profile.
Aug 3 2017, 3:39 PM

Jul 24 2017

groehl added a comment to T19509: Segmentation UL Treshold Tool preview color not green.

can this even be considered a bug? I think it is just that the checklist explicitly said the preview should be green.
Does not impede functionality..

Jul 24 2017, 3:51 PM · Restricted Project, Bugzilla, MITK
groehl added a comment to T19621: Pressing strg in Fill/Erase Tool does not do anything.

can we close this?

Jul 24 2017, 3:50 PM · Auto-closed, Bugzilla, MITK
groehl closed T19628: Create Documentation to show plugin / module interactions as Wontfix.

If you have a look at the sample classes from e.g. the awesome project template or simply from classes of the MITK Core module etc, it should get clear.

Jul 24 2017, 3:49 PM · MITK, Bugzilla
groehl lowered the priority of T19754: Inconsistencies loading multiple nrrd files in multithreaded environment via mitk::IOUtils::LoadImage from High to Low.

It will not be an issue for nearly all use cases. Also didn't find a way to reliably reproduce this.

Jul 24 2017, 3:46 PM · Auto-closed, Bugzilla, MITK
groehl closed T19608: Photoacoustic Simulations as Resolved.

Closing this, further work will be done in the CAMI experimental repository.

Jul 24 2017, 3:41 PM · Photoacoustics, Bugzilla, MITK

Jul 20 2017

groehl committed rMITKd2fca09f8c28: add changes for qpat paper to version control. - added proper index out of… (authored by groehl).
add changes for qpat paper to version control. - added proper index out of…
Jul 20 2017, 1:17 PM

Jul 6 2017

groehl added a comment to T23040: PluginGenerator doesn't work.

It doesn't work even from within visual studio. Why does the plugin generator have a Qt dependency anyway?

Jul 6 2017, 1:39 PM · MITK
groehl closed T19802: Create GPU Implementation of Monte Carlo Simulation Framework as Wontfix.

this will be dealt with (hopefully) by using a GPU mcxyz implementation provided by jacques

Jul 6 2017, 1:02 PM · Bugzilla, MITK
groehl triaged T23023: OpenIGTLink Auto detection in ubuntu buggy as High priority.
Jul 6 2017, 1:01 PM · Auto-closed, MITK
groehl triaged T23024: OpenIGTLink receiving tracking data from example provider buggy as High priority.
Jul 6 2017, 1:00 PM · Auto-closed, MITK
groehl closed Restricted Maniphest Task, a subtask of T19608: Photoacoustic Simulations, as Resolved.
Jul 6 2017, 1:00 PM · Photoacoustics, Bugzilla, MITK