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Nov 23 2023
Nov 23 2023
a178n committed rMITKfc8b96111fc6: Convert IsImageAtTimeStepValid as free function (authored by a178n).
Convert IsImageAtTimeStepValid as free function
SAM: Bugfix for 2D images
Nov 22 2023
Nov 22 2023
Nov 21 2023
Nov 21 2023
Pushed new branch to rMITK MITK: feature/T30263-sam-2d-bugfix.
a178n renamed T30263: [Segmentation] SAM tool issue with single slice (2D) from [Segmentation] SAM tool issue with single slice dicom to [Segmentation] SAM tool issue with single slice (2D).
a178n renamed T30275: [Segmentation] 3D Interpolation Show-Position-Nodes not updating sometimes from [Segmentation] 3D Interpolation position nodes also includes unlabeled slices to [Segmentation] 3D Interpolation Show-Position-Nodes not updating sometimes.
Pushed new branch to rMITK MITK: feature/T30256-add-python-version-check.
Nov 20 2023
Nov 20 2023
a178n renamed T30270: [Segmentation] Show Position Nodes in Interpolation not working for loaded mitk projects from [Segmentation] Show Position Nodes in not working for loaded mitk projects to [Segmentation] Show Position Nodes in Interpolation not working for loaded mitk projects.
Whoever corrects these, please update the contour colours across the checklist for consistency.
a178n added a parent task for T30263: [Segmentation] SAM tool issue with single slice (2D): T29524: SAM in MITK.
a178n added a subtask for T29524: SAM in MITK: T30263: [Segmentation] SAM tool issue with single slice (2D).
a178n triaged T30259: [Segmentation] Available models dropdown is empty in nnUNet tool as Normal priority.
a178n renamed T30253: SAM tool: Installation could show error message for wrong python path from SAM tool: Installation can show error for wrong python path to SAM tool: Installation could show error message for wrong python path.
Nov 17 2023
Nov 17 2023
Nov 16 2023
Nov 16 2023
a178n added a comment to T30253: SAM tool: Installation could show error message for wrong python path.
Pushed new branch to rMITK MITK: feature/T30253-sam-message-update.
a178n updated the task description for T30253: SAM tool: Installation could show error message for wrong python path.
a178n triaged T30253: SAM tool: Installation could show error message for wrong python path as Normal priority.
Nov 15 2023
Nov 15 2023
a178n triaged T30252: [Segmentation] Deleting an empty group causes Workbench crash as Unbreak Now! priority.
Nov 14 2023
Nov 14 2023
Nov 13 2023
Nov 13 2023
a178n edited projects for T30240: MonaiLabel: How to support more apps, added: MITK (v2023.12); removed Request for Discussion, MITK.
Nov 9 2023
Nov 9 2023
New checkbox "Allow all models" added to Preferences. Changes included in D875
a178n added a revision to T30240: MonaiLabel: How to support more apps: Unknown Object (Differential Revision).
Nov 8 2023
Nov 8 2023
a178n committed rMITK1ee8b7dc19a1: Totalsegmentator version update & minor changes (authored by a178n).
Totalsegmentator version update & minor changes
Totalsegmentator v2 version update
Nov 7 2023
Nov 7 2023
Oct 26 2023
Oct 26 2023
Pushed new branch to rMITK MITK: feature/T30231-monailabel-doku.
a178n added a revision to T30151: MONAI Label tool support CLICK interaction patterns: Unknown Object (Differential Revision).
a178n added a revision to T29295: MONAI Label App as auto-segmentation tool in MITK: Unknown Object (Differential Revision).
Oct 23 2023
Oct 23 2023
a178n triaged T30229: MONAI Label tool: Introduce time out parameter entry in Preferences as Normal priority.
a178n edited parent tasks for T29456: Datastore access facility in MONAILabel tool, added: T29192: [SEG] MONAI Label support in MITK Workbench; removed: T29295: MONAI Label App as auto-segmentation tool in MITK.
a178n edited parent tasks for T30151: MONAI Label tool support CLICK interaction patterns, added: T29192: [SEG] MONAI Label support in MITK Workbench; removed: T29295: MONAI Label App as auto-segmentation tool in MITK.
a178n renamed T30151: MONAI Label tool support CLICK interaction patterns from MONAI Label tool support other interaction patterns to MONAI Label tool support CLICK interaction patterns.
Oct 19 2023
Oct 19 2023
TotalSegmentator v2 compatibility changes
a178n committed rMITK586481d0ec30: Totalsegmentator documentation update for v2 (authored by a178n).
Totalsegmentator documentation update for v2
a178n committed rMITK3c75a3fb1b19: Totalsegmentator install packages update for v2 (authored by a178n).
Totalsegmentator install packages update for v2
a178n committed rMITK36f19e73bbfe: Totalsegmentator label list parsing update for v2 (authored by a178n).
Totalsegmentator label list parsing update for v2
a178n committed rMITK8e3186f5f139: Adding progress bar to Totalsegmentator tool (authored by a178n).
Adding progress bar to Totalsegmentator tool
Totalsegmentator minor code update
TotalSegmentator v2
Oct 18 2023
Oct 18 2023
a178n closed T30220: SAM tool: Custom NRRD writer not working as expected in Ubuntu, a subtask of T29524: SAM in MITK, as Resolved.
Oct 13 2023
Oct 13 2023
SAM tool user documentation first draft
Update SAM tool documentation
Update SAM doku
Update SAM tool doku
SAM tool user documentation
SAM backend changes backup
Segment Anything Tool initial commit
Negative clicks Ahoy!
SAM tool UI & backend code changes
a178n committed rMITK0a67fe3839d8: Merge branch 'develop' into feature/T29540-sam-2d-tool (authored by a178n).
Merge branch 'develop' into feature/T29540-sam-2d-tool
Adding checks to avoid clicks outside image
code update with time measurement
a178n committed rMITKdf6fef94a552: Merge branch 'develop' into feature/T29540-sam-2d-tool (authored by a178n).
Merge branch 'develop' into feature/T29540-sam-2d-tool
SAM tool with daemon working changes
a178n committed rMITKe4f53fdcc0c1: Merge branch 'master' into feature/T29604-sam-tool-2 (authored by a178n).
Merge branch 'master' into feature/T29604-sam-tool-2
SAM tool working changes
SAM installer working changes
a178n committed rMITKbdb8197e2a24: Remove Interactive vs Auto radiobutton selection (authored by a178n).
Remove Interactive vs Auto radiobutton selection
Changing click point shape to filled CIRCLE
a178n committed rMITK3cdacd7db9b1: Migrating python related functionalities to dedicated class (authored by a178n).
Migrating python related functionalities to dedicated class
a178n committed rMITKe7a8aa8351fe: Migrating SAM tool install options into Pref menu: part changes (authored by a178n).
Migrating SAM tool install options into Pref menu: part changes
SAM Python class code refactoring
a178n committed rMITK34a7d3b3077e: Code cleanup: Installer & model selection not part of SAM GUI anymore (authored by a178n).
Code cleanup: Installer & model selection not part of SAM GUI anymore
a178n committed rMITKeb253d085c61: SAM tool can now handle cuda out of memory situation and throw error message (authored by a178n).
SAM tool can now handle cuda out of memory situation and throw error message
a178n committed rMITK198eb50374b6: Moving GPU selection into MITK Preferences from SAM tool UI (authored by a178n).
Moving GPU selection into MITK Preferences from SAM tool UI
GPU name parsing bugfix
Adding SAM model selection tip for users
a178n committed rMITK9c581076d539: Adding live status messages from tool class to GUI (authored by a178n).
Adding live status messages from tool class to GUI
SAM Tool: Minor code cleanup
a178n committed rMITKfde7c40a6029: Move SAM tool Preferences to dedicated UI page (authored by a178n).
Move SAM tool Preferences to dedicated UI page
a178n committed rMITK28d42b2f66d4: Update Install: SAM wrapper can be now pip installed (authored by a178n).
Update Install: SAM wrapper can be now pip installed