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Nov 17 2021

neher committed rMITKDIFF7f2663073b8a: Merge branch 'T28857-FiberSegDistance' (authored by neher).
Merge branch 'T28857-FiberSegDistance'
Nov 17 2021, 1:12 PM
neher committed rMITKDIFF689205e1fcfa: Add new filter and miniapp (authored by neher).
Add new filter and miniapp
Nov 17 2021, 1:12 PM
neher closed T28857: Create cmd app to calculate distances from fiber bundles to segmentations as Resolved.
Nov 17 2021, 11:19 AM · MITK Diffusion
neher added a comment to T28857: Create cmd app to calculate distances from fiber bundles to segmentations.

Pushed new branch T28857-FiberSegDistance.

Nov 17 2021, 11:18 AM · MITK Diffusion
neher triaged T28857: Create cmd app to calculate distances from fiber bundles to segmentations as High priority.
Nov 17 2021, 11:17 AM · MITK Diffusion

Nov 12 2021

neher added a comment to T28849: Remove fiber parts only removes parts if point inside mask.

Maybe transform mask to polydata and use vtkIntersectionPolyDataFilter

Nov 12 2021, 1:01 PM · MITK Diffusion
neher triaged T28849: Remove fiber parts only removes parts if point inside mask as Normal priority.
Nov 12 2021, 1:00 PM · MITK Diffusion

Nov 3 2021

neher created T28832: Headmotion correction fails.
Nov 3 2021, 1:45 PM · MITK Diffusion
neher edited projects for T28831: dMRI nonlocal means denoising crashes, added: MITK Diffusion; removed MITK.
Nov 3 2021, 1:44 PM · MITK Diffusion
neher lowered the priority of T26960: Fiber mapper test fails from High to Normal.
Nov 3 2021, 1:21 PM · MITK Diffusion
neher triaged T28831: dMRI nonlocal means denoising crashes as High priority.
Nov 3 2021, 1:21 PM · MITK Diffusion

Oct 29 2021

neher committed rMITKDIFF0be09e9979d5: Merge branch 'T28772-ShaderIssues' (authored by neher).
Merge branch 'T28772-ShaderIssues'
Oct 29 2021, 2:43 PM
neher committed rMITKDIFF1f99fb547c71: Workaround using 2 clipping planes (authored by neher).
Workaround using 2 clipping planes
Oct 29 2021, 2:42 PM
neher added a comment to T28772: 2D fiber mapper and VTK9.

Pushed new branch T28772-ShaderIssues.

Oct 29 2021, 2:42 PM · MITK Diffusion
neher closed T28017: Update to vtk 9 as Resolved.
Oct 29 2021, 2:42 PM · MITK Diffusion
neher committed rMITKDIFFc60e14576a49: Merge branch 'T28017-FinalizeCompatibilityWithMitk' (authored by neher).
Merge branch 'T28017-FinalizeCompatibilityWithMitk'
Oct 29 2021, 2:41 PM

Oct 27 2021

neher added a comment to T28772: 2D fiber mapper and VTK9.

I tried to create an artificial fiberbundle using Fiberfox. The result looks fine in 2D and 3D.

Oct 27 2021, 6:25 PM · MITK Diffusion
neher added a comment to T28772: 2D fiber mapper and VTK9.

Original description of the issue by Nil Goyette:

Oct 27 2021, 6:21 PM · MITK Diffusion
neher triaged T28772: 2D fiber mapper and VTK9 as High priority.
Oct 27 2021, 6:18 PM · MITK Diffusion
neher added a comment to T28017: Update to vtk 9.

Pushed new branch T28017-FinalizeCompatibilityWithMitk.

Oct 27 2021, 2:24 PM · MITK Diffusion
neher committed rMITKDIFFed820764c686: Buildable. To-do: testing and 2D mapper fixing (authored by neher).
Buildable. To-do: testing and 2D mapper fixing
Oct 27 2021, 2:24 PM

Feb 16 2021

neher added a comment to T28109: Check correct association of Segs with origin DICOM.

Missing tags in the Seg, so it is an error in the file.

Feb 16 2021, 6:56 AM · Kaapana (internal)
neher closed T28109: Check correct association of Segs with origin DICOM as Resolved.

This should be resolved.

Feb 16 2021, 6:55 AM · Kaapana (internal)
neher closed T28053: DICOM Seg not associated with source DICOM as Resolved.

This should be resolved.

Feb 16 2021, 6:55 AM · Kaapana (internal)

Feb 15 2021

neher closed T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices as Resolved.
Feb 15 2021, 9:51 AM · MITK

Feb 8 2021

neher created T28285: DICOM with 'ä' in filename not readable on Windows.
Feb 8 2021, 2:06 PM · Checklist, MITK (v2022.10)

Feb 4 2021

neher committed rMITKab89919a514c: Interpolator as parameter (authored by neher).
Interpolator as parameter
Feb 4 2021, 2:15 PM
neher committed rMITK18a737ca6a88: Remove unneccesary cast. Update help text. (authored by neher).
Remove unneccesary cast. Update help text.
Feb 4 2021, 2:15 PM
neher committed rMITKae90d3d48c7b: Interpolator as parameter (authored by neher).
Interpolator as parameter
Feb 4 2021, 2:15 PM

Feb 1 2021

neher placed T27487: Multi-slice screenshots up for grabs.
Feb 1 2021, 5:40 PM · Auto-closed, MITK
neher added a comment to T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices.

Who should I assign as reviewer for this?

Feb 1 2021, 10:44 AM · MITK
neher added a comment to T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices.

Pushed new branch to rMITK MITK: feature/T28230-ResampleImageToReference.

Feb 1 2021, 9:58 AM · MITK

Jan 29 2021

neher added a comment to T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices.

I added the functionality to choose the interpolator. I forgot how to merge it :) Arcanist? And land on develop?

Jan 29 2021, 3:47 PM · MITK
neher added a comment to T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices.

Pushed new branch to rMITK MITK: T28230-ResampleImageToReference.

Jan 29 2021, 3:21 PM · MITK
neher added a comment to T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices.

These parameter descriptions don't really make sense, no?

Jan 29 2021, 2:36 PM · MITK
neher added a comment to T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices.

For RACOON we need it in the next weeks. Sooner is better of course :)
We could simply adapt CLResampleImageToReference to optionally use NN. Should be easy enough. I will take a look today.

Jan 29 2021, 2:07 PM · MITK

Jan 28 2021

neher closed T27974: Sarah requires an MITK installer containing the mitk file converter as Resolved.
Jan 28 2021, 9:51 AM · Missing Info, MITK
neher created T28232: Shapemodels.
Jan 28 2021, 9:47 AM · Auto-closed, Kaapana (internal), Request for Discussion, MITK
neher added a comment to T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices.

As far as I know, this is crucial for the RACOON project. So for the Kaapana side, this has a high priority.

Jan 28 2021, 9:33 AM · MITK

Jan 18 2021

neher committed rMITKDIFF58b42eb2204e: Merge branch 'T28017-VTK9-CodeIssues2' (authored by neher).
Merge branch 'T28017-VTK9-CodeIssues2'
Jan 18 2021, 3:44 PM
neher committed rMITKDIFFa1bbe1077655: Final changes for dependency upgrade compatibility (authored by neher).
Final changes for dependency upgrade compatibility
Jan 18 2021, 3:20 PM
neher added a comment to T28017: Update to vtk 9.

Pushed new branch T28017-VTK9-CodeIssues2.

Jan 18 2021, 3:20 PM · MITK Diffusion

Jan 14 2021

neher added a comment to T28017: Update to vtk 9.

Fiber mapper issue: https://vtk.org/doc/nightly/html/classvtkOpenGLPolyDataMapper.html#a80cc4bf99b408c63cad0a59c0388ffae

Jan 14 2021, 4:47 PM · MITK Diffusion
neher committed rMITKDIFF79272f527e51: Merge branch 'T28017-VTK9-CodeIssues' (authored by neher).
Merge branch 'T28017-VTK9-CodeIssues'
Jan 14 2021, 4:42 PM
neher committed rMITKDIFFdd4062dbe8b6: Solved tinyxml update issues (authored by neher).
Solved tinyxml update issues
Jan 14 2021, 4:42 PM

Dec 14 2020

neher triaged T28109: Check correct association of Segs with origin DICOM as High priority.
Dec 14 2020, 12:21 PM · Kaapana (internal)

Dec 3 2020

neher created T28053: DICOM Seg not associated with source DICOM.
Dec 3 2020, 10:24 AM · Kaapana (internal)

Nov 26 2020

neher committed rMITKDIFF7377ebb4907d: Merge branch 'T28017-VTK9' (authored by neher).
Merge branch 'T28017-VTK9'
Nov 26 2020, 3:09 PM
neher committed rMITKDIFFf6421a87b933: cell array nextcell (authored by neher).
cell array nextcell
Nov 26 2020, 3:09 PM
neher committed rMITKDIFF96cc00455433: update vtk connectomics (authored by neher).
update vtk connectomics
Nov 26 2020, 3:09 PM
neher committed rMITKDIFFeef11174f790: Merge branch 'T28017-VTK9' (authored by neher).
Merge branch 'T28017-VTK9'
Nov 26 2020, 3:09 PM
neher added a comment to T28017: Update to vtk 9.

Pushed new branch T28017-VTK9-CodeIssues.

Nov 26 2020, 12:51 PM · MITK Diffusion
neher committed rMITKDIFF72706e00fe52: vtk changes (authored by neher).
vtk changes
Nov 26 2020, 9:09 AM
neher added a comment to T28017: Update to vtk 9.

Pushed new branch T28017-VTK9.

Nov 26 2020, 9:09 AM · MITK Diffusion
neher claimed T28017: Update to vtk 9.
Nov 26 2020, 9:08 AM · MITK Diffusion
neher triaged T28017: Update to vtk 9 as Normal priority.
Nov 26 2020, 9:08 AM · MITK Diffusion

Nov 19 2020

neher triaged T27974: Sarah requires an MITK installer containing the mitk file converter as Unbreak Now! priority.
Nov 19 2020, 10:25 AM · Missing Info, MITK

Oct 13 2020

neher added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

Seems to be resolved by setting

"GIT_EXECUTABLE:FILEPATH=/usr/bin/git"

in MITKDashboardScript.cmake

Oct 13 2020, 10:04 AM · Noteworthy, MITK
neher added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

yes, openstack

Oct 13 2020, 8:34 AM · Noteworthy, MITK

Oct 12 2020

neher added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

This just occurred on my ubuntu dartclients. Any idea how to fix this in MITKDashboardScript.cmake?
https://cdash.mitk.org/index.php?project=MITK-Diffusion

Oct 12 2020, 11:40 AM · Noteworthy, MITK

Sep 21 2020

neher added a comment to T27718: Miniapp for basic DICOM testing.

Maybe a nice introduction project for a new student.

Sep 21 2020, 12:07 PM · MITK (v2023.12), Kaapana (internal)

Sep 11 2020

neher added a comment to T27718: Miniapp for basic DICOM testing.

check content, e.g. if != 0 voxels exist etc

Sep 11 2020, 1:13 PM · MITK (v2023.12), Kaapana (internal)

Sep 4 2020

neher triaged T27706: Refactor kaapana radiomics workflow to output xml files as Normal priority.
Sep 4 2020, 3:21 PM · Kaapana (internal)

Sep 2 2020

neher triaged T27699: mitkCommandLineParser should allow arbitrary types with input/output flag as Normal priority.
Sep 2 2020, 11:32 AM · MITK

Aug 31 2020

neher triaged T27690: Make FAST_DATA_DIR and SLOW_DATA_DIR configurable as Wishlist priority.
Aug 31 2020, 12:02 PM · Kaapana (internal)

Aug 19 2020

neher closed T27676: crate command line only build config for diffusion as Resolved.
Aug 19 2020, 10:58 AM · MITK Diffusion
neher committed rMITKDIFF663c55f14d73: Merge branch 'T27676-CmdOnly' (authored by neher).
Merge branch 'T27676-CmdOnly'
Aug 19 2020, 10:08 AM
neher committed rMITKDIFF70734f7bacb7: Update revision names (authored by neher).
Update revision names
Aug 19 2020, 10:08 AM

Aug 18 2020

neher committed rMITKDIFF5f6d4ad46f6d: Merge branch 'T27676-CmdOnly' (authored by neher).
Merge branch 'T27676-CmdOnly'
Aug 18 2020, 3:20 PM
neher committed rMITKDIFF64c2fb2b3ed7: Disabling qt help (authored by neher).
Disabling qt help
Aug 18 2020, 3:18 PM
neher committed rMITKDIFFbdc1268c179d: Added config (authored by neher).
Added config
Aug 18 2020, 2:54 PM
neher added a comment to T27676: crate command line only build config for diffusion.

Pushed new branch T27676-CmdOnly.

Aug 18 2020, 2:53 PM · MITK Diffusion
neher triaged T27676: crate command line only build config for diffusion as Wishlist priority.
Aug 18 2020, 2:39 PM · MITK Diffusion

Aug 5 2020

neher closed T27651: error loading .bvec files as Resolved.
Aug 5 2020, 11:39 AM · MITK Diffusion
neher committed rMITKDIFF1e8c9a8df972: Merge branch 'T27651-BvecFiles' (authored by neher).
Merge branch 'T27651-BvecFiles'
Aug 5 2020, 11:38 AM
neher committed rMITKDIFF010fb9d4e80b: Loading bvec files is now possible (authored by neher).
Loading bvec files is now possible
Aug 5 2020, 11:38 AM
neher added a comment to T27651: error loading .bvec files.

Pushed new branch T27651-BvecFiles.

Aug 5 2020, 11:38 AM · MITK Diffusion
neher triaged T27651: error loading .bvec files as Normal priority.
Aug 5 2020, 11:37 AM · MITK Diffusion
neher closed T27647: Fix dicom module renaming and rest module dep as Resolved.
Aug 5 2020, 8:21 AM · MITK Diffusion
neher committed rMITKDIFF4bd1b5fe32b7: Merge branch 'T27647-DicomModuleFix' (authored by neher).
Merge branch 'T27647-DicomModuleFix'
Aug 5 2020, 8:19 AM
neher committed rMITKDIFF29354b30dfdb: add dev breaking changes (authored by neher).
add dev breaking changes
Aug 5 2020, 8:18 AM
neher added a comment to T27647: Fix dicom module renaming and rest module dep.

Pushed new branch T27647-DicomModuleFix.

Aug 5 2020, 8:18 AM · MITK Diffusion

Aug 4 2020

neher triaged T27647: Fix dicom module renaming and rest module dep as High priority.
Aug 4 2020, 4:33 PM · MITK Diffusion
neher closed T27644: Visualize tractometry binning as Resolved.
Aug 4 2020, 2:46 PM · MITK Diffusion
neher committed rMITKDIFF5c25c9c1056c: Merge branch 'T27644-TractometryBinning' (authored by neher).
Merge branch 'T27644-TractometryBinning'
Aug 4 2020, 2:25 PM
neher committed rMITKDIFF41104a673019: Added centroid based binning (authored by neher).
Added centroid based binning
Aug 4 2020, 2:25 PM

Aug 3 2020

neher committed rMITKDIFF4c72d53fc1ad: Add coloring basic (authored by neher).
Add coloring basic
Aug 3 2020, 4:11 PM
neher added a comment to T27644: Visualize tractometry binning.

Pushed new branch T27644-TractometryBinning.

Aug 3 2020, 4:11 PM · MITK Diffusion
neher triaged T27644: Visualize tractometry binning as Wishlist priority.
Aug 3 2020, 3:53 PM · MITK Diffusion
neher triaged T27640: Segmentation cannot handle signed images as Normal priority.
Aug 3 2020, 8:52 AM · Auto-closed, MITK

Jul 29 2020

neher closed T27618: Update Readme as Resolved.
Jul 29 2020, 2:46 PM · MITK Diffusion
neher committed rMITKDIFF05a9a10bca71: Merge branch 'T27618-UpdateReadme' (authored by neher).
Merge branch 'T27618-UpdateReadme'
Jul 29 2020, 10:47 AM
neher committed rMITKDIFFc80f89d4a5e1: added ubuntu 20.04 (authored by neher).
added ubuntu 20.04
Jul 29 2020, 10:46 AM
neher added a comment to T27618: Update Readme.

Pushed new branch T27618-UpdateReadme.

Jul 29 2020, 10:46 AM · MITK Diffusion
neher created T27618: Update Readme.
Jul 29 2020, 10:46 AM · MITK Diffusion

Jul 27 2020

neher triaged T27609: Segmentation image not selectable for segmentation as Normal priority.
Jul 27 2020, 1:15 PM · MITK
neher closed T27603: Fit fiber compression to image spacing as Resolved.
Jul 27 2020, 1:10 PM · MITK Diffusion
neher committed rMITKDIFF6928050dcb80: Merge branch 'T27603-FibCompression' (authored by neher).
Merge branch 'T27603-FibCompression'
Jul 27 2020, 12:11 PM
neher committed rMITKDIFF397fd34bd7ff: Adjust cmdapp (authored by neher).
Adjust cmdapp
Jul 27 2020, 12:11 PM
neher committed rMITKDIFF91ebbc696a17: Merge branch 'T27603-FibCompression' (authored by neher).
Merge branch 'T27603-FibCompression'
Jul 27 2020, 10:34 AM
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