Query: All Stories

	Include stories about projects I am a member of.

taskSubset is deprecated
there is now
subset(x, top, tasks)

if top is specified subset to top algorithms (only applicable to single task challenges)
if tasks is specified subset of tasks (only applicable to multi task challenges)

fix subset(), remove taskSubset()

20 might be a sensible number

the sentence can be dropped. But wasn't it planned to revise the text in line with the paper in total?

Revise segmentation plugin documentation (T27093).

Additional information for watershed segmentation tool.

Additional notes for 2D region growing tool.

Add section on 3D+t segmentation.

Add literature references to watershed segmentation.

Clarification for 3D Otsu description.

Correct typo and reword.

Correct sonsistency sub-nodes/subnodes. Rename all to sub-nodes.

Sort out 2D and 3D interpolation layout.

Use coronal instead of frontal.

Rephrase section on RGB image suppport.

Fix upper/lower case writing of segmentation view and plugin.

Description updates and typo corrections.

Correct segmentation plugin overview image.

Update 3D segmentation tools figures.

Update documentation and images.

Rename gui_qt to views for consistent naming.

In T27774#210754, @wiesenfa wrote:

In T27774#210741, @eisenman wrote:

Ok, weird. For me it says: "The top 5 out of 5 algorithms are considered."

your result is strange given the fact that not the correct things are actually counted

In T27774#210741, @eisenman wrote:

Ok, weird. For me it says: "The top 5 out of 5 algorithms are considered."

it won't be more that I needed for the missing data description I guess;-) I still think that this sentence should be avoided if no subset is in fact used

this is more or less what I tried, ugliness is T27326. I think a ggplot solution mentioned there would be better

report gains new argument "dpi" to change resolution

set dpi default to 150

set dpi default to 300

Merge branch 'develop' of https://phabricator.mitk.org/source/challenger into…

In T27774#210731, @wiesenfa wrote:

I think it will be confusing if it writes "top 5 of 5 algorithms", I would put an if

which changes? as.challenge does not have a full data attribute. The changes in subset have been done by you, see my comments in T27685.

Ok, weird. For me it says: "The top 5 out of 5 algorithms are considered."

Merge branch 'feature/T27773-FixPackageDependencies' into develop

Move ggplot2 and purrr to Depends

set.seed(4)
strip=runif(n,.9,1)
c_ideal=cbind(task="c_ideal",
              rbind(
                      data.frame(alg_name="A1",value=runif(n,.9,1),case=1:n),
                      data.frame(alg_name="A2",value=runif(n,.8,.89),case=1:n),
                      data.frame(alg_name="A3",value=runif(n,.7,.79),case=1:n),
                      data.frame(alg_name="A4",value=runif(n,.6,.69),case=1:n),
                      data.frame(alg_name="A5",value=runif(n,.5,.59),case=1:n)
              ))
challenge=as.challenge(c_ideal, 
                       algorithm="alg_name", case="case", value="value",
                       smallBetter = T)
ranking=challenge%>%aggregateThenRank(FUN = "mean", # aggregation function, 
                                      na.treat="na.rm", # either "na.rm" to remove missing data, 
                                      ties.method = "min" # a character string specifying 
)

In T27774#210733, @wiesenfa wrote:

currently It says "The top 0 out of 0 algorithms are considered." in my latest example

description of missings in reports+as.challenge

currently It says "The top 0 out of 0 algorithms are considered." in my latest example

I think it will be confusing if it writes "top 5 of 5 algorithms", I would put an if
which changes? as.challenge does not have a full data attribute. The changes in subset have been done by you, see my comments in T27685.

This is on purpose as I wanted to avoid further nested ifs, but can be discussed.
This was the only variable where I found all algorithm factors. How can they be accessed now? fulldata is not working anymore after you latest changes.

yes I think so. maybe you have purrr (or dplyr) and ggplot loaded in the workspace.
packages in depends are loaded at startup (and we need these package to be available by the user). imports does not load the packages, functions of challengeR can however call them.
it is true that packages in depends should be minimize, but these are needed

Are you using the latest develop branch? There everything works for me.

Revise Matchpoint algorithm browser documentation.

Update BuildTag description.

Update Interaction description.

Add description of Version and BuildTag.

Update Location definition.

Update documentation.

Remove sentence about default path in the usage section.

T27111 - Revise documentation of MatchPoint Visualizer

Fixed review remarks

Revise documentation of MatchPoint Visualizer

This issue is fixed in T27677.

In T27677#210406, @eisenman wrote:

In section 3.2.1 "Visualizing bootstrap results", two visualization methods are mentioned, but only one is contained in the report: "To investigate which tasks separate algorithms well (i.e., lead to a stable ranking), two visualization methods
are recommended."

Do we add a second plot or adapt the text?

Merge branch 'feature/T27677-RestructureReports' into develop

Rephrase some explanations

Mention top x performing algorithms in the single-task reports

All Stories
Use Results
Edit Query
Hide Query

Sep 24 2020

Sep 23 2020

All StoriesUse ResultsEdit QueryHide Query

Sep 24 2020

Sep 23 2020

All Stories
Use Results
Edit Query
Hide Query