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Sep 28 2020

kompan committed rMITKfe74f67da4f1: ConcentrationGen updates. (authored by kompan).
ConcentrationGen updates.
Sep 28 2020, 3:28 PM
kompan committed rMITKf5fe3f7f1624: Change due to removal of noConversion option. (authored by kompan).
Change due to removal of noConversion option.
Sep 28 2020, 3:28 PM
kompan committed rMITK1a8ddb73fa8e: Enable factorSpinBox as default. (authored by kompan).
Enable factorSpinBox as default.
Sep 28 2020, 3:28 PM
kompan committed rMITK6c00daa0a665: spinBox_baselineEnd/StartTimeStep settings (authored by kompan).
spinBox_baselineEnd/StartTimeStep settings
Sep 28 2020, 3:28 PM
kompan committed rMITK8ea890d9e5c7: Add boost math constants. (authored by kompan).
Add boost math constants.
Sep 28 2020, 3:28 PM
kompan committed rMITK9eaa4e5a849a: Update CheckSettings (authored by kompan).
Update CheckSettings
Sep 28 2020, 3:28 PM
kompan committed rMITK305a6ee019e7: Remove option "no conversion". (authored by kompan).
Remove option "no conversion".
Sep 28 2020, 3:28 PM
kompan committed rMITK9f9979794072: Update CreateQTPartControl to handle box visibilities. (authored by kompan).
Update CreateQTPartControl to handle box visibilities.
Sep 28 2020, 3:27 PM
kompan committed rMITK1b8d35fb5a77: Update UI of concetration conversion setting to be the same as in Perfusion… (authored by kompan).
Update UI of concetration conversion setting to be the same as in Perfusion…
Sep 28 2020, 3:27 PM
eisenman moved T27770: Inconsistency in report description from In Progress to Done on the challengeR (v1.0) board.

We talked about this in the meeting this morning. It makes sense to proceed stepwise: First, having consistent descriptions and Lena's feedback (T27677) integrated for release v1.0. We should not reuse text from the paper until it is accepted. Once it is accepted, we can still decide on the revision of the report text (T27420).

Sep 28 2020, 12:45 PM · challengeR (v1.0)
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

As unknown sites are appearing on our dashboard, we should introduce authentication:
https://blog.kitware.com/cdash-authenticated-submissions/

Sep 28 2020, 12:11 PM · CI, MITK (v2021.02), Restricted Project
kalali committed rMITK21448a29e41d: Revise Segmentation Utilities Plugin Documentation (authored by kalali).
Revise Segmentation Utilities Plugin Documentation
Sep 28 2020, 11:53 AM
kalali closed T27094: [MITKDoc] Revise Segmentation Utilities Plugin Documentation as Resolved.
Sep 28 2020, 11:29 AM · Cleared, MITK (v2021.02)
kalali committed rMITK9d5aabd78459: Revise Segmentation Utilities Plugin Documentation (authored by kalali).
Revise Segmentation Utilities Plugin Documentation
Sep 28 2020, 11:28 AM
eisenman committed rCHALLENGERe65b282c6076: Merge branch 'feature/T27770-FixInconsistentDescription' into develop (authored by eisenman).
Merge branch 'feature/T27770-FixInconsistentDescription' into develop
Sep 28 2020, 10:54 AM
eisenman committed rCHALLENGERd2a4438a74d1: Fix inconsistent description (authored by eisenman).
Fix inconsistent description
Sep 28 2020, 10:52 AM
eisenman claimed T27770: Inconsistency in report description.
Sep 28 2020, 10:36 AM · challengeR (v1.0)

Sep 27 2020

kalali awarded T24771: [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept a Party Time token.
Sep 27 2020, 10:01 PM · MITK (v2021.02)
kalali closed T24771: [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept as Resolved.

Finally!

Sep 27 2020, 10:01 PM · MITK (v2021.02)
kalali committed rMITK6363c989851a: Fix review remarks (authored by kalali).
Fix review remarks
Sep 27 2020, 10:00 PM
kalali committed rMITK6dfa915f8b23: Add a concept documentation for the data storage inspectors and the overhaul of… (authored by kalali).
Add a concept documentation for the data storage inspectors and the overhaul of…
Sep 27 2020, 10:00 PM
kalali committed rMITK2c7e25135c68: Extend description of the selection widgets (authored by kalali).
Extend description of the selection widgets
Sep 27 2020, 10:00 PM
kalali committed rMITKc2d9b08c2e32: Add description of history- and favorite-inspector (authored by kalali).
Add description of history- and favorite-inspector
Sep 27 2020, 10:00 PM
kalali committed rMITK3b1c65d327a5: Correct documentation according to review remarks (authored by kalali).
Correct documentation according to review remarks
Sep 27 2020, 10:00 PM
kalali committed rMITKd9d4eb1e23ff: Merge remote-tracking branch 'origin/T24771-Integration' into T24771-Develop… (authored by kalali).
Merge remote-tracking branch 'origin/T24771-Integration' into T24771-Develop…
Sep 27 2020, 10:00 PM
kalali committed rMITK2c281e2614bb: Correct selection concept documentation page (authored by kalali).
Correct selection concept documentation page
Sep 27 2020, 10:00 PM
kalali added a revision to T27792: [Segmentation] Utilities view shows gaps between multiple selection widgets: Unknown Object (Differential Revision).
Sep 27 2020, 9:55 PM · MITK (v2021.02)
kalali triaged T27792: [Segmentation] Utilities view shows gaps between multiple selection widgets as Normal priority.
Sep 27 2020, 9:48 PM · MITK (v2021.02)
floca edited projects for T27510: [MITKDoc] Add/revise developers documentation for new statistics back-/frontend, added: MITK, Next Milestone; removed MITK (v2021.02).
Sep 27 2020, 12:49 PM · MITK

Sep 25 2020

floca removed a project from T27569: US DICOM images are displayed turquoise and LUT cannot be changed: Request for Discussion.

Discussion result: if GDCM does not fix it fast enough, we should take option 3 (as we very likely need a dedicated DICOM US mime type anyways).

Sep 25 2020, 10:00 PM · Restricted Project, MITK
kislinsk added a comment to T27784: 2020 Week 39 (Late September).

Deleted branch release/T27784-2020-Week-39.

Sep 25 2020, 2:49 PM · MITK
kislinsk closed T27784: 2020 Week 39 (Late September) as Resolved.
Sep 25 2020, 2:48 PM · MITK
floca added a revision to T27791: Optimize RT Mime Types: Restricted Differential Revision.
Sep 25 2020, 2:43 PM · MITK
eisenman moved T27761: [shiny] Prevent generation of report if field "name" is empty from Done to Backlog on the webChallengeR board.

Whitespaces should be trimmed here as well, e.g. if a space character is entered and report generated, this error also occurs.

Sep 25 2020, 2:43 PM · webChallengeR
floca triaged T27791: Optimize RT Mime Types as Normal priority.
Sep 25 2020, 2:34 PM · MITK
kislinsk committed rMITKb5518f0d9117: Merge branch 'master' into develop (authored by kislinsk).
Merge branch 'master' into develop
Sep 25 2020, 2:01 PM
kislinsk committed rMITK202a4bcb66b7: 2020 Week 39 (Late September) (authored by kislinsk).
2020 Week 39 (Late September)
Sep 25 2020, 2:00 PM
kislinsk edited the content of Changelog.
Sep 25 2020, 1:54 PM · MITK
kislinsk edited the content of 2020 Week 39 (Late September).
Sep 25 2020, 1:54 PM
schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

@nolden I tried the "make package" and it went through without any issues.
Should I upload the result here? Or is it just about the information that there are no error?
Could you please explain what you mean with "target machine"?

Sep 25 2020, 1:14 PM · Missing Info, DICOM, MITK
kislinsk added a comment to T27784: 2020 Week 39 (Late September).

Pushed new branch release/T27784-2020-Week-39.

Sep 25 2020, 12:56 PM · MITK
kislinsk edited the content of Merging into master Branch.
Sep 25 2020, 12:22 PM
nolden added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

@schererj we looked at the debug output, thanks. Unfortunately it seems to be complicated ... I would ask you to try another thing:

Sep 25 2020, 12:09 PM · Missing Info, DICOM, MITK
wiesenfa moved T27447: significanceMap function raises warning about deprecated function call from In Progress to Done on the challengeR (v1.0) board.
Sep 25 2020, 12:08 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER2691d1ba70a6: fix grid in significancePlot (authored by wiesenfa).
fix grid in significancePlot
Sep 25 2020, 12:06 PM
wiesenfa committed rCHALLENGER0ab46fb7c444: Merge branch 'develop' of https://phabricator.mitk.org/source/challenger into… (authored by wiesenfa).
Merge branch 'develop' of https://phabricator.mitk.org/source/challenger into…
Sep 25 2020, 12:06 PM
nolden added a comment to T27701: Overhaul or remove PluginGenerator.

@kislinsk : I just noticed we had some earlier discussions and there is a branch which fixes two minor issues, not sure if relevant for option (1):

Sep 25 2020, 11:45 AM · MITK, Next Milestone
thomass moved T27789: [Segmentation] Disentangle Clipping Plane plugin from segmentation from Backlog to Segmentation on the MITK (v2021.02) board.
Sep 25 2020, 11:42 AM · MITK (v2021.02)
kompan closed T27340: [ModelFit] Request for Mac Workbench installer as Resolved.
Sep 25 2020, 11:42 AM · Auto-closed, Restricted Project, MITK
thomass triaged T27789: [Segmentation] Disentangle Clipping Plane plugin from segmentation as Normal priority.
Sep 25 2020, 11:41 AM · MITK (v2021.02)
eisenman triaged T27788: [shiny] Several blocks for configuration of data structure appear when switching from options "head" and "all" as High priority.
Sep 25 2020, 11:39 AM · webChallengeR
thomass removed a project from T27184: Clipping plane deformation tool doesn't show updates in 3d window: Request for Discussion.

Request discussion result:

Sep 25 2020, 11:37 AM · Next Milestone, MITK, Missing Info, Restricted Project
kompan added a project to T8140: Reimplement volume annotations for segmentations: Request for Discussion.
Sep 25 2020, 11:34 AM · MITK (v2024.06), Request for Discussion, Bugzilla
kislinsk placed T8140: Reimplement volume annotations for segmentations up for grabs.
Sep 25 2020, 11:33 AM · MITK (v2024.06), Request for Discussion, Bugzilla
kompan reopened T8140: Reimplement volume annotations for segmentations as "Open".
Sep 25 2020, 11:33 AM · MITK (v2024.06), Request for Discussion, Bugzilla
kompan added a project to T8140: Reimplement volume annotations for segmentations: Next Milestone.
Sep 25 2020, 11:32 AM · MITK (v2024.06), Request for Discussion, Bugzilla
kislinsk removed a project from T27701: Overhaul or remove PluginGenerator: Request for Discussion.

We discussed this task in the MITK meeting and we want to go with option (1). In addition, we want to syncronize the branches of rMITK MITK and rMPT MITK-ProjectTemplate and add the project template as extension to all of our CI clients. We should also look into the new template repository feature of GitHub.

Sep 25 2020, 11:26 AM · MITK, Next Milestone
floca moved T27184: Clipping plane deformation tool doesn't show updates in 3d window from Backlog to MITK Meeting on the Request for Discussion board.
Sep 25 2020, 11:24 AM · Next Milestone, MITK, Missing Info, Restricted Project
thomass committed rMITK1223fbcd0327: T27772 rename fit inspector views in manual overview (authored by thomass).
T27772 rename fit inspector views in manual overview
Sep 25 2020, 11:22 AM
thomass closed T27772: Clean up ModelFitInspector in TOC of doxygen documentation as Resolved by committing rMITK1223fbcd0327: T27772 rename fit inspector views in manual overview.
Sep 25 2020, 11:22 AM · Cleared, MITK (v2021.02)
thomass added a revision to T27772: Clean up ModelFitInspector in TOC of doxygen documentation: Unknown Object (Differential Revision).
Sep 25 2020, 11:20 AM · Cleared, MITK (v2021.02)
eisenman created T27786: [shiny] Navigation from page "Uncertainty analysis" to "Generate report" without option selected.
Sep 25 2020, 11:20 AM · webChallengeR
thomass added a project to T27184: Clipping plane deformation tool doesn't show updates in 3d window: Request for Discussion.
Sep 25 2020, 11:17 AM · Next Milestone, MITK, Missing Info, Restricted Project
kislinsk triaged T27784: 2020 Week 39 (Late September) as Normal priority.
Sep 25 2020, 11:00 AM · MITK
kislinsk created an object: Merging into master Branch.
Sep 25 2020, 10:59 AM
eisenman added a comment to T27757: [shiny] Contradicting instruction on page "Uncertainty analysis".

Same for "Introduce the number of samples and click >>".

Sep 25 2020, 10:55 AM · webChallengeR
kislinsk created an object: 2020 Week 39 (Late September).
Sep 25 2020, 10:52 AM
aguilera moved T27764: [shiny] Detect early when insufficient number of columns are loaded from In Progress to Done on the webChallengeR board.
Sep 25 2020, 10:38 AM · webChallengeR
wiesenfa moved T27447: significanceMap function raises warning about deprecated function call from Backlog to In Progress on the challengeR (v1.0) board.
Sep 25 2020, 10:17 AM · challengeR (v1.0)
eisenman triaged T27783: [shiny] Typo in waiting pop-up as Low priority.
Sep 25 2020, 10:14 AM · webChallengeR
eisenman created T27782: [shiny] Success notification may be hidden.
Sep 25 2020, 10:10 AM · webChallengeR
kompan closed T27115: [MITKDoc] Revise Matchpoint Frame Correction Plugin Documentation as Resolved.
Sep 25 2020, 10:06 AM · Cleared, MITK (v2021.02)
eisenman moved T27757: [shiny] Contradicting instruction on page "Uncertainty analysis" from Done to Backlog on the webChallengeR board.

In my opinion, this sentence can be removed in general. At this stage the user should already know how to navigate. It does not add any valuable information.

Sep 25 2020, 10:04 AM · webChallengeR
eisenman created T27780: [shiny] Links should open in new tabs.
Sep 25 2020, 10:00 AM · webChallengeR
eisenman created T27779: [shiny] Clarifications on page "Configure ranking".
Sep 25 2020, 9:54 AM · webChallengeR
kompan closed T27093: [MITKDoc] Revise Segmentation Plugin as Resolved.
Sep 25 2020, 9:54 AM · MITK (v2021.02)
kompan lowered the priority of T27608: [MITKDoc] Documentation Refurbish - Developer Manual from Normal to Low.
Sep 25 2020, 9:53 AM · MITK (v2024.06), Cleared
wiesenfa claimed T27447: significanceMap function raises warning about deprecated function call.
Sep 25 2020, 9:47 AM · challengeR (v1.0)
wiesenfa created T27778: turn off networks.
Sep 25 2020, 9:45 AM · challengeR (v1.0)
kompan committed rMITK170f5f885a6c: Revise Matchpoint Frame Correction view documentation (authored by kompan).
Revise Matchpoint Frame Correction view documentation
Sep 25 2020, 9:45 AM
kompan committed rMITKa22ea7a3da40: Update example view screenshot. (authored by kompan).
Update example view screenshot.
Sep 25 2020, 9:45 AM
kompan committed rMITK781c135807f7: Update screenshots. (authored by kompan).
Update screenshots.
Sep 25 2020, 9:45 AM
kompan committed rMITKb31c04ecb5ab: Update/rewrite view description. (authored by kompan).
Update/rewrite view description.
Sep 25 2020, 9:45 AM
eisenman edited projects for T27326: autolayout networks in multi task report ugly, added: challengeR; removed challengeR (v1.0).

I agree!

Sep 25 2020, 8:33 AM · challengeR

Sep 24 2020

wiesenfa added a comment to T27326: autolayout networks in multi task report ugly.

I propose to turn off networks and exclude them from the report for now.
if this is solved, we can reintroduce them.
they are not essential I think. what do you think?

Sep 24 2020, 5:24 PM · challengeR
eisenman moved T27774: wrong text in report on algorithm subsets from In Progress to Done on the challengeR (v1.0) board.

It's important to mention that the subset of algorithms should be drawn from the final ranking to avoid wrong results. So if bootstrapping should be performed, create the subset from the bootstrapped ranking, not from the initial ranking that is passed to perform bootstrapping.

Sep 24 2020, 5:15 PM · challengeR (v1.0)
eisenman committed rCHALLENGER595046260c52: Merge branch 'feature/T27774-FixReportingOfAlgorithmSubset' into develop (authored by eisenman).
Merge branch 'feature/T27774-FixReportingOfAlgorithmSubset' into develop
Sep 24 2020, 5:09 PM
eisenman committed rCHALLENGER6fbbc9bb3920: Test that full data set is preserved (authored by eisenman).
Test that full data set is preserved
Sep 24 2020, 5:08 PM
eisenman committed rCHALLENGERb55aaaf309cf: Fix reporting of algorithm subset (authored by eisenman).
Fix reporting of algorithm subset
Sep 24 2020, 5:08 PM
wiesenfa placed T27326: autolayout networks in multi task report ugly up for grabs.
Sep 24 2020, 4:26 PM · challengeR
wiesenfa moved T27777: Failing unit tests for challenge from Backlog to Done on the challengeR (v1.0) board.
Sep 24 2020, 4:24 PM · challengeR (v1.0)
wiesenfa claimed T27777: Failing unit tests for challenge.
Sep 24 2020, 4:24 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER083f7c671f05: fix test for as.challenge (authored by wiesenfa).
fix test for as.challenge
Sep 24 2020, 4:24 PM
wiesenfa moved T27776: Failing unit tests for subset of tasks from Backlog to Done on the challengeR (v1.0) board.
Sep 24 2020, 4:18 PM · challengeR (v1.0)
wiesenfa claimed T27776: Failing unit tests for subset of tasks.
Sep 24 2020, 4:18 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER08deba103b9e: fix subset (authored by wiesenfa).
fix subset
Sep 24 2020, 4:17 PM
eisenman triaged T27777: Failing unit tests for challenge as High priority.
Sep 24 2020, 3:39 PM · challengeR (v1.0)
eisenman triaged T27776: Failing unit tests for subset of tasks as High priority.
Sep 24 2020, 3:38 PM · challengeR (v1.0)
wiesenfa moved T27708: ggplot2 dendrogram from In Progress to Backlog on the challengeR (v1.0) board.
Sep 24 2020, 3:28 PM · challengeR
wiesenfa added a comment to T27708: ggplot2 dendrogram .

this will require a further package, put on hold for the moment

Sep 24 2020, 3:28 PM · challengeR