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gaehlert (Nils Gählert)Disabled
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Aug 1 2016, 12:10 PM (115 w, 4 d)
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Recent Activity

Dec 22 2016

gaehlert committed rMITKfcb3ffbac1c9: Radiomics Apps from Master Thesis (authored by gaehlert).
Radiomics Apps from Master Thesis
Dec 22 2016, 10:30 AM

Nov 25 2016

gaehlert closed T19958: Empty XNAT preference page reports an error if another preference page is cofirmed with OK as Resolved.
Nov 25 2016, 2:17 PM · MITK (2016-11)
gaehlert committed rMITK32c457d2e04e: Merge branch 'T19958-XnatPreferencesFixingErrorMessage' (authored by gaehlert).
Merge branch 'T19958-XnatPreferencesFixingErrorMessage'
Nov 25 2016, 2:17 PM
gaehlert committed rMITK164cb2f6970c: Remove a unneeded error message when clicking OK in the preferences page. (authored by gaehlert).
Remove a unneeded error message when clicking OK in the preferences page.
Nov 25 2016, 2:16 PM
gaehlert added a comment to T19958: Empty XNAT preference page reports an error if another preference page is cofirmed with OK.

Pushed new branch T19958-XnatPreferencesFixingErrorMessage.

Nov 25 2016, 2:16 PM · MITK (2016-11)
gaehlert claimed T19958: Empty XNAT preference page reports an error if another preference page is cofirmed with OK.
Nov 25 2016, 9:16 AM · MITK (2016-11)

Nov 16 2016

gaehlert committed rMITKa67c4dba03cf: Clean up radiomics mini apps and add a mini app for wavelet extraction (authored by gaehlert).
Clean up radiomics mini apps and add a mini app for wavelet extraction
Nov 16 2016, 12:55 PM

Nov 11 2016

gaehlert added a comment to T18800: Color picker window opened behind workbench window.

Cannot reproduce this on Ubuntu 14.04 neither for the "Change Color" nor the "Open File" Dialog.

Nov 11 2016, 3:17 PM · MITK (2016-11), Bugzilla
gaehlert committed rMITK8b70c600ab9f: Merge branch 'T19314-AddKeywordsToPreferencesPageSearch' (authored by gaehlert).
Merge branch 'T19314-AddKeywordsToPreferencesPageSearch'
Nov 11 2016, 3:13 PM
gaehlert closed T19314: Preferences dialog search is broken as Resolved.
Nov 11 2016, 3:09 PM · MITK (2016-11), Bugzilla
gaehlert added a comment to T19314: Preferences dialog search is broken.

Bug is fixed.

Nov 11 2016, 3:08 PM · MITK (2016-11), Bugzilla
gaehlert committed rMITK08c1843b44b7: Add additional keywords for some basic plugin preferences (Data Manager… (authored by gaehlert).
Add additional keywords for some basic plugin preferences (Data Manager…
Nov 11 2016, 3:03 PM
gaehlert added a comment to T19314: Preferences dialog search is broken.

Pushed new branch T19314-AddKeywordsToPreferencesPageSearch.

Nov 11 2016, 3:03 PM · MITK (2016-11), Bugzilla
gaehlert added a comment to T19314: Preferences dialog search is broken.

We cannot reproduce the non existing results when searching for "scene".
EDIT: This seemed to appear randomly due to the random order of searching pages and its children.
However, we will try to add all names of the available pages as a keywords.

Nov 11 2016, 11:47 AM · MITK (2016-11), Bugzilla
gaehlert committed rMITKdeb0e308584c: Merge branch 'T22090-SortPreferencesPage' (authored by gaehlert).
Merge branch 'T22090-SortPreferencesPage'
Nov 11 2016, 11:42 AM
gaehlert committed rMITK238291706784: Always sort the available preferences pages ascending. (authored by gaehlert).
Always sort the available preferences pages ascending.
Nov 11 2016, 11:34 AM
gaehlert added a comment to T22090: Preferences Page Entries are not sorted.

Pushed new branch T22090-SortPreferencesPage.

Nov 11 2016, 11:34 AM · MITK (2016-11)
gaehlert created T22090: Preferences Page Entries are not sorted.
Nov 11 2016, 10:32 AM · MITK (2016-11)
gaehlert claimed T19314: Preferences dialog search is broken.
Nov 11 2016, 9:43 AM · MITK (2016-11), Bugzilla
gaehlert closed T19123: "General" preferences pages missing on first start as Invalid.

Can't reproduce this on Linux (Ubuntu 14.04) and Windows.

Nov 11 2016, 9:42 AM · MITK (2016-11), Bugzilla
gaehlert claimed T19123: "General" preferences pages missing on first start.
Nov 11 2016, 9:18 AM · MITK (2016-11), Bugzilla

Nov 9 2016

gaehlert updated subscribers of T22065: QmitkRenderWindowMenu disappears or flickers on OS X.
Nov 9 2016, 9:32 AM · MITK, Pull Request
gaehlert updated subscribers of T22066: Docking a plugin on OS X is nearly impossible.
Nov 9 2016, 9:31 AM · MITK

Oct 17 2016

gaehlert committed rMITK451dda65e757: Windows commit. (authored by gaehlert).
Windows commit.
Oct 17 2016, 2:27 PM
gaehlert committed rMITK5ae9ac30dd02: will add the complete wavelet calculation for windows (authored by gaehlert).
will add the complete wavelet calculation for windows
Oct 17 2016, 2:27 PM
gaehlert committed rMITK43a6483ddeb5: Merge remote-tracking branch 'origin/bug-19831-CommonMiniApps' into… (authored by gaehlert).
Merge remote-tracking branch 'origin/bug-19831-CommonMiniApps' into…
Oct 17 2016, 2:27 PM

Sep 30 2016

gaehlert updated subscribers of T19992: MITK won't start on some windows machines when using a remote desktop connection.
Sep 30 2016, 9:10 AM · MITK
gaehlert claimed T19992: MITK won't start on some windows machines when using a remote desktop connection.
Sep 30 2016, 9:10 AM · MITK
gaehlert moved T19992: MITK won't start on some windows machines when using a remote desktop connection from Backlog to Bugsquashing - In Progress on the MITK board.
Sep 30 2016, 9:10 AM · MITK

Sep 28 2016

gaehlert committed rMITKa076c0e09099: Automatically create segmentation from Probability Map (authored by gaehlert).
Automatically create segmentation from Probability Map
Sep 28 2016, 12:59 PM

Sep 20 2016

gaehlert committed rMITK4a04abec0023: Minor bug fixes (authored by gaehlert).
Minor bug fixes
Sep 20 2016, 8:55 AM

Sep 16 2016

gaehlert created T19992: MITK won't start on some windows machines when using a remote desktop connection.
Sep 16 2016, 3:22 PM · MITK
gaehlert closed T19434: Screenshot Maker saves file with wrong filename if filename contains a dot as Resolved.
Sep 16 2016, 1:39 PM · Bugzilla, MITK
gaehlert committed rMITKa6ed336bca0e: Merge branch 'T19434-ScreenshotMakerFilenameExtensionMissing' (authored by gaehlert).
Merge branch 'T19434-ScreenshotMakerFilenameExtensionMissing'
Sep 16 2016, 1:38 PM
gaehlert committed rMITKd5267babcf96: Merge remote-tracking branch 'origin/bug-19434… (authored by gaehlert).
Merge remote-tracking branch 'origin/bug-19434…
Sep 16 2016, 1:38 PM
gaehlert added a comment to T19434: Screenshot Maker saves file with wrong filename if filename contains a dot.

Pushed new branch T19434-ScreenshotMakerFilenameExtensionMissing.

Sep 16 2016, 1:37 PM · Bugzilla, MITK
gaehlert closed T19725: MITK crashes if old binary image is used for 3D Threshold as Resolved.
Sep 16 2016, 1:35 PM · MITK (2016-11), Bugzilla
gaehlert committed rMITK6b233c849d6a: Merge branch 'T19725-SegmentationOldBinaryImageCrash' (authored by gaehlert).
Merge branch 'T19725-SegmentationOldBinaryImageCrash'
Sep 16 2016, 1:34 PM
gaehlert committed rMITKde5af65f7e59: Merge branch 'bug-19725-SegmentationOldBinaryImageCrash' into T19725… (authored by gaehlert).
Merge branch 'bug-19725-SegmentationOldBinaryImageCrash' into T19725…
Sep 16 2016, 1:33 PM
gaehlert added a comment to T19725: MITK crashes if old binary image is used for 3D Threshold.

Pushed new branch T19725-SegmentationOldBinaryImageCrash.

Sep 16 2016, 1:33 PM · MITK (2016-11), Bugzilla
gaehlert committed rMITKb52675063f1c: Add two more CommandLine-Apps for adjusting the Geometry and Segmentation… (authored by gaehlert).
Add two more CommandLine-Apps for adjusting the Geometry and Segmentation…
Sep 16 2016, 1:29 PM

Sep 14 2016

gaehlert committed rMITKe54e0df464e6: Prevent a probability map with p = 0 from being transparent. (authored by gaehlert).
Prevent a probability map with p = 0 from being transparent.
Sep 14 2016, 10:01 AM

Sep 13 2016

gaehlert triaged T19971: Level Window Slider does not fit to values for Center&Window as High priority.
Sep 13 2016, 11:18 AM · MITK
gaehlert created T19971: Level Window Slider does not fit to values for Center&Window.
Sep 13 2016, 11:17 AM · MITK

Sep 9 2016

gaehlert committed rMITKd6596ed3ef4a: increase the number of features to fit to the new added features. (authored by gaehlert).
increase the number of features to fit to the new added features.
Sep 9 2016, 1:58 PM
gaehlert committed rMITK881b791b87be: Increase the number of features to fit to the new added features. (authored by gaehlert).
Increase the number of features to fit to the new added features.
Sep 9 2016, 1:57 PM
gaehlert committed rMITK458728b5a5b6: remove a division by Zero bug and some tiny typos. (authored by gaehlert).
remove a division by Zero bug and some tiny typos.
Sep 9 2016, 1:39 PM
gaehlert committed rMITK50983ecae1ef: Add the normalized non-uniformity features. (authored by gaehlert).
Add the normalized non-uniformity features.
Sep 9 2016, 1:37 PM
gaehlert committed rMITK743c8488485a: will add the non-uniformity normalized values for - Grey level (Run Length)… (authored by gaehlert).
will add the non-uniformity normalized values for - Grey level (Run Length)…
Sep 9 2016, 1:24 PM
gaehlert committed rMITKbb7e8d22babe: fix minor Bugs due to Zero division (authored by gaehlert).
fix minor Bugs due to Zero division
Sep 9 2016, 1:24 PM
gaehlert committed rMITK997036fa9a9a: Merge branch 'bug-19827-additionalRadiomicsFeatures' into T19827… (authored by gaehlert).
Merge branch 'bug-19827-additionalRadiomicsFeatures' into T19827…
Sep 9 2016, 1:24 PM
gaehlert added a comment to T19827: Add additional Radiomics features such as Grey Level Size Zone Matrix, ....

Pushed new branch T19827-AdditionalRadiomicsFeatures.

Sep 9 2016, 1:24 PM · Bugzilla, MITK
gaehlert committed rMITK2a5de0f1f4de: fixed a small division by Zero bug. (authored by gaehlert).
fixed a small division by Zero bug.
Sep 9 2016, 11:47 AM
gaehlert committed rMITKa8fb8c80cda0: Created a CommandLine app for generating probability maps (authored by gaehlert).
Created a CommandLine app for generating probability maps
Sep 9 2016, 10:35 AM

Sep 2 2016

gaehlert committed rMITK602f0066fd91: will add a CommandLineApp that calculates the DICE of 2 segmentations will add… (authored by gaehlert).
will add a CommandLineApp that calculates the DICE of 2 segmentations will add…
Sep 2 2016, 3:53 PM
gaehlert committed rMITK1d44bff1a470: Merge branch 'bug-19831-CommonMiniApps' into T19831-CommonMiniApps (authored by gaehlert).
Merge branch 'bug-19831-CommonMiniApps' into T19831-CommonMiniApps
Sep 2 2016, 3:53 PM
gaehlert added a comment to T19831: Create a bunch of common and often used miniapps such as converter, 4D extractor.

Pushed new branch T19831-CommonMiniApps.

Sep 2 2016, 3:53 PM · Bugzilla, MITK

Sep 1 2016

gaehlert added a comment to T19827: Add additional Radiomics features such as Grey Level Size Zone Matrix, ....

In File itkEnhancedHistogramToSizeZoneFeaturesFilter.hxx the following lines arount l. 190 needs to be replaced by

Sep 1 2016, 1:16 PM · Bugzilla, MITK

Aug 17 2016

gaehlert added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

An interessting point: if you have both the QVTKWidget and the QWebEngineView in your code, but you don't add them both to the actual UI, the rendering issues will remain for the other Widget.

Aug 17 2016, 4:38 PM · MITK, Bugzilla
gaehlert added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

This bug should be reproduced by this minimal example (taken from step 8 of the tutorials):

Aug 17 2016, 4:23 PM · MITK, Bugzilla
gaehlert committed rMITKe63d27d0b145: Version 20160817 ExtractPatches (authored by gaehlert).
Version 20160817 ExtractPatches
Aug 17 2016, 10:19 AM
gaehlert committed rMITK2281e9ed07d3: Version 20160815 ExtractPatches-Miniapp (authored by gaehlert).
Version 20160815 ExtractPatches-Miniapp
Aug 17 2016, 10:19 AM

Aug 16 2016

gaehlert added a comment to T19851: Workbench doesn't start on a few workstations.

Unfortunately, this does not resolve the rendering issues due to QWebEngine on Mac OS X.

Aug 16 2016, 1:07 PM · MITK (2016-11)

Aug 15 2016

gaehlert added a comment to T19865: Creating resource folder as a subfolder of the "scans" folder in XNAT Tree Browser disabled.

Ok, I see...
you could try something like

Aug 15 2016, 4:34 PM · MITK
gaehlert added a comment to T19865: Creating resource folder as a subfolder of the "scans" folder in XNAT Tree Browser disabled.

Not sure if such a feature is actually desired, because a segmentation does not really belongs to the DICOM-series (and at least for the MITK segmentations is no DICOM series) , so disallowing to add additional data to a existing DICOM-series might have been done on purpose.
Besides this, you can always add resources to the patient's Resources folder or add more than one if needed.

Aug 15 2016, 3:05 PM · MITK
gaehlert added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

About the Workbench Rendering Problem:

  • Try to start the workbench -> There will be a rendering problem
  • Then close the "Welcome Screen".
  • Close the Workbench
  • Reopen it.
Aug 15 2016, 12:39 PM · MITK, Bugzilla

Aug 13 2016

gaehlert added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

A possible way to make (at least) the tutorial steps work would be to use QVTKWidget2 as a base class for QmitkRenderWindow, but according to http://stackoverflow.com/questions/26944831/using-qvtkwidget-and-qopenglwidget-in-the-same-ui QVTKWidget2 is old.

Aug 13 2016, 10:44 AM · MITK, Bugzilla

Aug 12 2016

gaehlert added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

This must be a problem within the MitkWorkbench because it is possible to start the MitkExample (Step 8) with only a smaller Retina-based problem - see attached files. Running the MitkStep 8 on a non-Retina display works perfectly fine.

Aug 12 2016, 5:16 PM · MITK, Bugzilla
gaehlert added a comment to T19679: Mac Installer does not start due to missing qt plugins.

This problem still occurs when building a package both for Qt 5.6.1 and Qt 5.7.0.
The only way to make the Workbench start is to manually copy the the QtWebEngineCore.framework from <QtPath>/lib/ to the MitkWorkbench.app/Contents/Frameworks/

Aug 12 2016, 3:22 PM · MITK (2016-11), Bugzilla

Aug 4 2016

gaehlert committed rMITKf5dc5fdc4fd0: Adds a writer for wide format and make a selection possible from the… (authored by gaehlert).
Adds a writer for wide format and make a selection possible from the…
Aug 4 2016, 2:27 PM
gaehlert committed rMITKd31d7a9c985f: will remove the default save file (authored by gaehlert).
will remove the default save file
Aug 4 2016, 1:21 PM
gaehlert committed rMITK93ab3e296cdb: will fix a small wavelet issue and add the stationary wavelet transform as well (authored by gaehlert).
will fix a small wavelet issue and add the stationary wavelet transform as well
Aug 4 2016, 1:21 PM
gaehlert committed rMITKe493bbb9c6d9: will add a miniapp for logical AND of two masks (authored by gaehlert).
will add a miniapp for logical AND of two masks
Aug 4 2016, 1:21 PM

Aug 2 2016

gaehlert added projects to T19831: Create a bunch of common and often used miniapps such as converter, 4D extractor: MITK, Bugzilla.
Aug 2 2016, 10:24 AM · Bugzilla, MITK
gaehlert added a comment to T19827: Add additional Radiomics features such as Grey Level Size Zone Matrix, ....

Finally,

  • Neighbourhood grey tone difference based features
Aug 2 2016, 10:24 AM · Bugzilla, MITK
gaehlert added a comment to T19831: Create a bunch of common and often used miniapps such as converter, 4D extractor.

Commandline tool for extraction of a particular timestep of a 4D Volume added.

Aug 2 2016, 10:24 AM · Bugzilla, MITK
gaehlert added a comment to T19827: Add additional Radiomics features such as Grey Level Size Zone Matrix, ....

The following features have been added yet:

  • Grey Level Size Zone based features
  • Grey Level Variance
  • Run Length Variance
  • Run entropy
  • Joint average
  • Compactness 3 (Compactness 1 with improved definition)
  • Asphericity
  • Centre of mass shift
  • PCA-based features (Major/minor/least axis length, Elongation, Flatness)
  • 10th percentile
  • 90th percentile
  • Interquartile range (75th - 25th quantile)
  • Robust mean absolute deviation
Aug 2 2016, 10:24 AM · Bugzilla, MITK
gaehlert added a comment to T19827: Add additional Radiomics features such as Grey Level Size Zone Matrix, ....

The following features have been added:

  • First measure of information correlation
  • Second measure of information correlation
Aug 2 2016, 10:24 AM · Bugzilla, MITK
gaehlert added projects to T19827: Add additional Radiomics features such as Grey Level Size Zone Matrix, ...: MITK, Bugzilla.
Aug 2 2016, 10:24 AM · Bugzilla, MITK
gaehlert added projects to T19809: MITK crashes if you download dicom data from xnat: MITK, Bugzilla.
Aug 2 2016, 10:24 AM · Bugzilla, MITK
gaehlert added a comment to T19809: MITK crashes if you download dicom data from xnat.

[7eaaba]: Merge branch 'bug-19809-XNATDicomDownloadCrash'

Merged commits:

2016-07-13 15:11:50 Nils Gaehlert [32ce2d]
will fix the problem that the MITK Workbench will crash if there were some issues with writing permissions to the download folder.

Aug 2 2016, 10:24 AM · Bugzilla, MITK
gaehlert added projects to T19794: xnat crashes when downloading file and download directory is not found: MITK, Bugzilla.
Aug 2 2016, 10:24 AM · Bugzilla, MITK
gaehlert added projects to T19725: MITK crashes if old binary image is used for 3D Threshold: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
gaehlert added a comment to T19725: MITK crashes if old binary image is used for 3D Threshold.

Bug is fixed. Please merge into Master.

Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
gaehlert added a comment to T19681: Implement XNAT HTTP status error code handling.

[b54737]: Merge branch 'bug-19681-XNATHTTPStatusCodeHandling' into bug-19681-Xna

Merged commits:

2016-06-15 16:44:01 Nils Gaehlert [2fca6d]

  • show a particular error message only once.
    • fix tab order in preferences page
    • improve the search stability
Aug 2 2016, 10:23 AM · Bugzilla, MITK
gaehlert added a comment to T19681: Implement XNAT HTTP status error code handling.

[6c3cfe]: COMP Merge branch 'bug-19681-XnatIntegrationBranch'

Merged commits:

2016-06-15 17:21:44 Nils Gaehlert [3bf426]
COMP remove a link from include statements.

Aug 2 2016, 10:23 AM · Bugzilla, MITK
gaehlert added a comment to T19681: Implement XNAT HTTP status error code handling.

resolved fixed

Aug 2 2016, 10:23 AM · Bugzilla, MITK
gaehlert added projects to T19658: Properties (Outline binary, outline width, ...) don't work for multilable images: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
gaehlert added projects to T19650: Clipping Plane inconsistent behaviour with > 6 planes: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
gaehlert added a comment to F1312: ClippingPlanes14Segments.png.

7 Segments, 14 partial volumes

Aug 2 2016, 10:23 AM
gaehlert added projects to T19649: Clipping Plane Surface model won't be created from segmentation when using interpolation: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
gaehlert added a comment to T19630: XNAT download and auto-open open wrong files, patient integrity not guaranteed!.

[483a25]: Merge branch 'bug-19630-XnatNoFileDownload'

Merged commits:

2016-03-23 12:54:13 Nils Gaehlert [061b2c]
will save the images downloaded by Xnat corresponding to the server-side folder structure.

Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
gaehlert added projects to T19626: Image Statistics cannot be calculated for multiple planar figures at once: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
gaehlert added projects to T19630: XNAT download and auto-open open wrong files, patient integrity not guaranteed!: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · MITK (2016-11), Bugzilla
gaehlert added a comment to T19620: Correction tool crashes when drawing outside of image.

[ab006a]: Merge branch 'bug-19620-CorrectionToolIndexBoundariesCrash'

Merged commits:

2016-03-30 16:37:23 Nils Gaehlert [720216]
corrects strange behaviour when adding only small regions

Aug 2 2016, 10:23 AM · MITK (2016-03), Bugzilla
gaehlert added a comment to T19620: Correction tool crashes when drawing outside of image.

See attachment for example crash.

Aug 2 2016, 10:23 AM · MITK (2016-03), Bugzilla
gaehlert added a comment to F1311: CorrectionToolCrash.png.

CorrectionToolCrash

Aug 2 2016, 10:23 AM
gaehlert added projects to T19605: Add Shortcut of XNAT Preferences on XNAT Tree Browser: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
gaehlert added projects to T19603: XNAT file upload fails when adding a new subject using MITK: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Bugzilla, MITK
gaehlert added a comment to T19603: XNAT file upload fails when adding a new subject using MITK.

Additional comment: The described problem only occurs when dropping the data on a "Resource"-Folder. When dropping it on the subject itself, there is no problem.

Aug 2 2016, 10:23 AM · Bugzilla, MITK