[Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images
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	• engelhsa
	Nov 19 2014, 3:31 PM

Description

Other time steps cannot be segmented.

To reproduce:

open 4D image (e.g. US4DCyl.nrrd)
create a new static segmentation mask
change the time step to t != 0
set a seed point using the Fast Marching 3D segmentation tool
see how the green contour is places nowhere close the seed point

Revisions and Commits

rMITK MITK
	Restricted Differential Revision	rMITK01ec63137fc5 Refactoring of segmentation tools
	Restricted Differential Revision	rMITKe7f10292bd56 BEAKING CHANGE: renamed mitk::AutoSegmentationTool::Get3DImage() -> mitk…
	Restricted Differential Revision	rMITK5ba8241108f8 Corrected and refactored Otsu.
	Restricted Differential Revision	rMITKc8d3d2fcbf5f fixed gcc error
	Restricted Differential Revision	rMITK290e64ed3d0a Corrected and refactored FastMarching3DTool.
	Restricted Differential Revision	rMITKc245edfec492 Refactore BinaryThresholdBaseTool to use new AutoSegmentationWithPreviewTool
	Restricted Differential Revision	rMITKd4a8d54db37e BREAKING CHANGE: CanHandle signature changed to also check for the workingdata.
	Restricted Differential Revision	rMITK59f4be0819b6 Added a AutoSegmentationWithPreviewTool base class to resolve redundancy in…
	Restricted Differential Revision	rMITK3a866b5069ef Improved documentation and constness.

Related Objects
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Status	Assigned	Task
Resolved	floca	T28118 Refactoring of SegTool2D
Resolved	floca	T27507 Check the current behavior of the segmentation tools according static and dynamic 4D segmentation
Resolved	floca	T18436 [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images

Event Timeline

• engelhsa added projects: MITK, Bugzilla.Nov 19 2014, 3:31 PM

This task was automatically closed because it wasn't updated at least since July 2016 (over 2 years). Please re-open this task if you think that it is still relevant. This most probably means that you will resolve it.

kalali added a parent task: T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.Jul 29 2020, 2:05 PM

kalali renamed this task from Fast Marching 3D Tool only supported for first time step in 4D images to [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.Jul 29 2020, 2:08 PM

kalali reopened this task as Open.

kalali removed kislinsk as the assignee of this task.

kalali updated the task description. (Show Details)

kalali edited projects, added MITK (v2021.02); removed MITK.

kalali mentioned this in T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.Jul 29 2020, 2:15 PM

floca raised the priority of this task from Normal to High.Aug 4 2020, 8:45 PM

floca moved this task from Backlog to Segmentation on the MITK (v2021.02) board.

floca claimed this task.Aug 4 2020, 8:56 PM

floca added a revision: Restricted Differential Revision.Aug 6 2020, 9:08 PM

I also experience a crash in the tool:

Open US4DCyl.nrrd
Use 2D Segmentation tool on timestep =0
Change timestep = 2
Open FastMarching --> Crash!!

@floca Maybe you have an instant idea since you are working on it atm. Otherwise I create a new task for it.

Did you experience the error based on the Differential? Did you open FastMarching for 2D or 3D?

Oh I didn’t look into the Differential yet, only tried it with the current develop. The crash I observed in with FastMarching3D

In T18436#208159, @thomass wrote:

Oh I didn’t look into the Differential yet, only tried it with the current develop. The crash I observed in with FastMarching3D

Ok, then I will spare the time and make no assumptionss or guesses as D380 has made an major rework of FastMarching3D. 😉