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Jul 6 2017

• groehl closed Restricted Maniphest Task, a subtask of T23009: OpenIGTLink: Sending to PLUS is buggy, as Resolved.
Jul 6 2017, 12:59 PM · Auto-closed, MITK
• groehl triaged T23025: OpenIGTLink Communication from Ubuntu to Windows doesn't work as Normal priority.
Jul 6 2017, 12:59 PM · Auto-closed, MITK

Jun 29 2017

• groehl created T23025: OpenIGTLink Communication from Ubuntu to Windows doesn't work.
Jun 29 2017, 4:04 PM · Auto-closed, MITK
• groehl created T23024: OpenIGTLink receiving tracking data from example provider buggy.
Jun 29 2017, 4:03 PM · Auto-closed, MITK
• groehl created T23023: OpenIGTLink Auto detection in ubuntu buggy.
Jun 29 2017, 4:00 PM · Auto-closed, MITK
• groehl committed rMITKc3cc22e50930: possible fix for tool naming (authored by • groehl).
possible fix for tool naming
Jun 29 2017, 3:51 PM
• groehl committed rMITK88129af784f9: automagically retrieve tool name from igtl message. (authored by • groehl).
automagically retrieve tool name from igtl message.
Jun 29 2017, 1:49 PM
• groehl committed rMITKb8092c70d9c3: fix timestamp issue (authored by • groehl).
fix timestamp issue
Jun 29 2017, 1:49 PM
• groehl added a subtask for T23009: OpenIGTLink: Sending to PLUS is buggy: Unknown Object (Maniphest Task).
Jun 29 2017, 1:30 PM · Auto-closed, MITK

Jun 28 2017

• groehl committed rMITK64dec0144c3a: fix merge compile issue. Tested this with images. (authored by • groehl).
fix merge compile issue. Tested this with images.
Jun 28 2017, 4:49 PM
• groehl committed rMITK2c883922fdc5: Merge branch 'T22595-NavigationModules-oigtl-groehl' into T22595… (authored by • groehl).
Merge branch 'T22595-NavigationModules-oigtl-groehl' into T22595…
Jun 28 2017, 4:49 PM
• groehl committed rMITK795b52b44abe: implemented logging of IGTL messages (authored by • groehl).
implemented logging of IGTL messages
Jun 28 2017, 3:54 PM
• groehl committed rMITK2f997099915a: wrapped message bases in mitk IGTL message (authored by • groehl).
wrapped message bases in mitk IGTL message
Jun 28 2017, 3:53 PM
• groehl committed rMITK820f177e8803: included button to log messages (authored by • groehl).
included button to log messages
Jun 28 2017, 3:53 PM
• groehl added a comment to T22595: Stable version of navigation modules based on 2016-11 release.

Pushed new branch T22595-NavigationModules-oigtl-groehl.

Jun 28 2017, 3:53 PM · IGT, MITK
• groehl created T23011: Navigation Tool Manager load tool storage dialogue opens twice.
Jun 28 2017, 10:22 AM · Auto-closed, MITK

Jun 27 2017

• kleina awarded T19608: Photoacoustic Simulations a Pirate Logo token.
Jun 27 2017, 4:09 PM · Photoacoustics, Bugzilla, MITK

May 22 2017

• groehl committed rMITKb67cf1efdcee: added 40 to each random seed and volume id to continue simulations with… (authored by • groehl).
added 40 to each random seed and volume id to continue simulations with…
May 22 2017, 2:09 PM

May 8 2017

• groehl committed rMITK736084e21067: implemented - fixed seed generation - at three wavelengths - with unique id's (authored by • groehl).
implemented - fixed seed generation - at three wavelengths - with unique id's
May 8 2017, 5:07 PM
• groehl committed rMITK51b8c85c56ab: included the volume id (authored by • groehl).
included the volume id
May 8 2017, 5:07 PM
• groehl added a comment to T19608: Photoacoustic Simulations.

Pushed new branch T19608-OxygenationTrainingSetGeneration.

May 8 2017, 5:07 PM · Photoacoustics, Bugzilla, MITK
• groehl committed rMITKdb361eaaaad0: TAG1: Creation of the test set (authored by • groehl).
TAG1: Creation of the test set
May 8 2017, 3:42 PM
• groehl added a comment to T19608: Photoacoustic Simulations.

Pushed new branch T19608-OxygenationExperimentTestSetGeneration.

May 8 2017, 3:42 PM · Photoacoustics, Bugzilla, MITK

Apr 21 2017

• groehl added a comment to rMITK625203e0fc06: Plugin and Module working with simple example.

Shoot - thanks for pointing that out. We didn't clear the doc directory before committing.
This should solve itself as soon as we build documentation ourselves for the first time right?

Apr 21 2017, 5:31 PM

Apr 13 2017

• groehl committed rMITK02cdb1caff2e: change parameters as described in the jacques paper. Will create volumes with… (authored by • groehl).
change parameters as described in the jacques paper. Will create volumes with…
Apr 13 2017, 4:30 PM
• groehl added a comment to T19608: Photoacoustic Simulations.

Pushed new branch T19608-OxygenationExperiment.

Apr 13 2017, 4:30 PM · Photoacoustics, Bugzilla, MITK

Apr 6 2017

• groehl committed rMITK292eb8527ab2: some adjustments for a specific use case (authored by • groehl).
some adjustments for a specific use case
Apr 6 2017, 1:30 PM

Mar 20 2017

• groehl committed rMITK3fec597271e6: added the possibility to add custom elements with a convenience method (authored by • groehl).
added the possibility to add custom elements with a convenience method
Mar 20 2017, 12:56 PM

Mar 17 2017

• groehl committed rMITKbadd4d22d9b5: the example will send TRANSFORM messages as well (authored by • groehl).
the example will send TRANSFORM messages as well
Mar 17 2017, 3:58 PM
• groehl added a comment to T19677: Cannot receive Open IGTLink TDATA messages in MITK.
  • MITK is sending TRANSFORM messages instead of TDATA messages now.
  • Within the example plugins the TRANSFORM messages can be received (but currently not displayed).
  • With two MITK instances communication still does not work using the Tracking Toolbox.
Mar 17 2017, 3:53 PM · Auto-closed, Bugzilla, MITK
• groehl committed rMITK3aa6227fc061: modified filter so that it will send TRANSFORM messages (authored by • groehl).
modified filter so that it will send TRANSFORM messages
Mar 17 2017, 12:41 PM
• groehl added a comment to T19677: Cannot receive Open IGTLink TDATA messages in MITK.

Pushed new branch T19677-FixOIGTLMitkToMitkCommunication.

Mar 17 2017, 12:41 PM · Auto-closed, Bugzilla, MITK

Jan 23 2017

• groehl committed rMITK19ad9362b513: added info statements for debugging (authored by • groehl).
added info statements for debugging
Jan 23 2017, 8:34 AM
• groehl committed rMITK3a6b21d7777e: added method to multiply images with factor (authored by • groehl).
added method to multiply images with factor
Jan 23 2017, 8:34 AM

Jan 19 2017

• groehl committed rMITK7d2ff649d6d5: performed testing with spectral unmixing (authored by • groehl).
performed testing with spectral unmixing
Jan 19 2017, 3:29 PM

Jan 11 2017

• groehl closed T22243: Symbolic names are not resolved in PluginGenerator as Resolved.

fixed and verified. Some refactoring introduced white spaces into the symbols.

Jan 11 2017, 10:40 AM · MITK (2016-11)
• groehl committed rMITKf4de1c75129f: Merge branch 'T22243-PluginGeneratorSymbolicNames' (authored by • groehl).
Merge branch 'T22243-PluginGeneratorSymbolicNames'
Jan 11 2017, 10:39 AM
• groehl committed rMITK531b5e7fe6bd: fix name templates (authored by • groehl).
fix name templates
Jan 11 2017, 10:33 AM
• groehl added a comment to T22243: Symbolic names are not resolved in PluginGenerator .

Pushed new branch T22243-PluginGeneratorSymbolicNames.

Jan 11 2017, 10:33 AM · MITK (2016-11)
• groehl committed rMITK4bcf93dc8678: added empty plugin (authored by • groehl).
added empty plugin
Jan 11 2017, 9:30 AM
• groehl claimed T22243: Symbolic names are not resolved in PluginGenerator .
Jan 11 2017, 9:26 AM · MITK (2016-11)

Jan 10 2017

• groehl committed rMITK5515c768180b: Add a test case for the noise model generator. (authored by • groehl).
Add a test case for the noise model generator.
Jan 10 2017, 10:03 AM
• groehl committed rMITK3a7705191678: add documentation to noise generator and overload the ApplyNoiseModel method. (authored by • groehl).
add documentation to noise generator and overload the ApplyNoiseModel method.
Jan 10 2017, 10:03 AM

Jan 9 2017

• groehl committed rMITK0c6d13fb51d5: added documentation (authored by • groehl).
added documentation
Jan 9 2017, 3:05 PM
• groehl committed rMITK607b78ad214e: cleanup of MITK_INFO messages (authored by • groehl).
cleanup of MITK_INFO messages
Jan 9 2017, 3:05 PM
• groehl committed rMITK485b7c42dadb: more general test (authored by • groehl).
more general test
Jan 9 2017, 2:47 PM
• groehl committed rMITK9879880f7ace: added an error category such that other chromophores that are unaccounted for… (authored by • groehl).
added an error category such that other chromophores that are unaccounted for…
Jan 9 2017, 2:47 PM
• groehl committed rMITK32b4b2dbfd39: more sophisticated test for spectral unmixing filter (authored by • groehl).
more sophisticated test for spectral unmixing filter
Jan 9 2017, 1:10 PM
• groehl committed rMITKdc6b20594a08: added oxygenation output to spectral unmixing filter. (authored by • groehl).
added oxygenation output to spectral unmixing filter.
Jan 9 2017, 1:10 PM
• groehl committed rMITK3b0bc044240e: added first simple test case for linear spectral unmixing (authored by • groehl).
added first simple test case for linear spectral unmixing
Jan 9 2017, 12:34 PM
• groehl committed rMITK70504e6a4196: added itk filter for linear spectral unmixing (authored by • groehl).
added itk filter for linear spectral unmixing
Jan 9 2017, 12:34 PM

Dec 16 2016

• groehl added a comment to T19608: Photoacoustic Simulations.

Merged this branch into the current master in an integration branch.

Dec 16 2016, 12:06 PM · Photoacoustics, Bugzilla, MITK

Dec 14 2016

• groehl committed rMITKe95f1c494876: added implementation for noise generator (authored by • groehl).
added implementation for noise generator
Dec 14 2016, 3:25 PM
• groehl committed rMITK8d587dd47429: fix compile issues with new master (authored by • groehl).
fix compile issues with new master
Dec 14 2016, 3:25 PM
• groehl committed rMITKbc41ea7dddb8: Merge remote-tracking branch 'origin/bug-19608-PhotoacousticSimulations' into… (authored by • groehl).
Merge remote-tracking branch 'origin/bug-19608-PhotoacousticSimulations' into…
Dec 14 2016, 3:25 PM
• groehl added a comment to T19608: Photoacoustic Simulations.

Pushed new branch T19608-PhotoacousticSimulationIntegrationBranch.

Dec 14 2016, 3:24 PM · Photoacoustics, Bugzilla, MITK
• groehl committed rMITK86fed9888ad2: fixed tests (authored by • groehl).
fixed tests
Dec 14 2016, 11:56 AM
• groehl committed rMITK854da41a5012: added some more minimalistic documentation (authored by • groehl).
added some more minimalistic documentation
Dec 14 2016, 11:42 AM
• groehl committed rMITKd42c50413578: removed comments (authored by • groehl).
removed comments
Dec 14 2016, 11:17 AM
• groehl committed rMITKa1c9249cde02: fixed radius changing bug (authored by • groehl).
fixed radius changing bug
Dec 14 2016, 11:17 AM
• groehl committed rMITK3bc7fa5f3795: first build after refactorings. (authored by • groehl).
first build after refactorings.
Dec 14 2016, 11:17 AM

Dec 2 2016

• groehl added a comment to T22243: Symbolic names are not resolved in PluginGenerator .

We tested this with a windows and linux machine using the current master (f94aca1d163721b62e1b05cef36fbe068fea84ed).

Dec 2 2016, 2:37 PM · MITK (2016-11)

Dec 1 2016

• groehl committed rMITK3afdc856f981: fixed an issue in the noise generator (authored by • groehl).
fixed an issue in the noise generator
Dec 1 2016, 11:45 AM

Nov 29 2016

• groehl committed rMITK32522cc5d54b: the noise generator will no longer produce numbers < 0. (authored by • groehl).
the noise generator will no longer produce numbers < 0.
Nov 29 2016, 1:06 PM
• groehl committed rMITK4d377b09aadc: ui changes (authored by • groehl).
ui changes
Nov 29 2016, 1:06 PM

Nov 21 2016

• groehl committed rMITK801b49876241: fixed a bug, where too many voxels would be classified as skin voxels (authored by • groehl).
fixed a bug, where too many voxels would be classified as skin voxels
Nov 21 2016, 1:56 PM
• groehl committed rMITK612e3095b2f6: fixed a bug where the skin was drawn even though its thickness was 0 (authored by • groehl).
fixed a bug where the skin was drawn even though its thickness was 0
Nov 21 2016, 1:49 PM
• groehl committed rMITKfb3bb15e0ab0: fixed loading bug (authored by • groehl).
fixed loading bug
Nov 21 2016, 1:49 PM

Nov 7 2016

• groehl committed rMITKdf265d8acc58: will now use correct normalization value. (authored by • groehl).
will now use correct normalization value.
Nov 7 2016, 11:22 AM
• groehl committed rMITK36bffd193fa5: removed legacy binary file loading/saving support (authored by • groehl).
removed legacy binary file loading/saving support
Nov 7 2016, 11:22 AM

Nov 4 2016

• groehl committed rMITK948d9391c779: fixed ui labeling (authored by • groehl).
fixed ui labeling
Nov 4 2016, 2:29 PM
• groehl committed rMITKe3be9be765f3: implemented normalization of pvfc with nrrd fluence input file. (authored by • groehl).
implemented normalization of pvfc with nrrd fluence input file.
Nov 4 2016, 2:29 PM

Nov 3 2016

• groehl committed rMITKd50571fd3167: program will now run without normalizaion (authored by • groehl).
program will now run without normalizaion
Nov 3 2016, 5:33 PM
• groehl committed rMITK0e6022dfc234: fixed fat tissue generator (authored by • groehl).
fixed fat tissue generator
Nov 3 2016, 5:33 PM

Nov 2 2016

• groehl committed rMITKb73f6c4d6428: add properties for detector position to nrrd files (authored by • groehl).
add properties for detector position to nrrd files
Nov 2 2016, 5:01 PM
• groehl committed rMITKceff87ef8df4: fixed PVFC canculation in MCxyz (authored by • groehl).
fixed PVFC canculation in MCxyz
Nov 2 2016, 5:01 PM
• groehl committed rMITKcbea7fef96f6: binary file will now be build (authored by • groehl).
binary file will now be build
Nov 2 2016, 5:01 PM

Oct 11 2016

• groehl committed rMITK858a11a36621: added new output to say how many photons were simulated (authored by • groehl).
added new output to say how many photons were simulated
Oct 11 2016, 3:33 PM
• groehl committed rMITK729f9fd2fd30: implemented new parallelization scheme (authored by • groehl).
implemented new parallelization scheme
Oct 11 2016, 3:25 PM

Oct 6 2016

• groehl changed the visibility for T19608: Photoacoustic Simulations.
Oct 6 2016, 6:08 PM · Photoacoustics, Bugzilla, MITK
• groehl committed rMITKaa57098c3aae: update noise sigma sanity check to appropriate values (authored by • groehl).
update noise sigma sanity check to appropriate values
Oct 6 2016, 10:56 AM
• groehl committed rMITK65550f336651: noise model will now create Gaussian noise (authored by • groehl).
noise model will now create Gaussian noise
Oct 6 2016, 10:30 AM

Sep 22 2016

• groehl committed rMITK852e19143663: moved code to the MITK module (authored by • groehl).
moved code to the MITK module
Sep 22 2016, 5:22 PM
• groehl raised the priority of T19608: Photoacoustic Simulations from Wishlist to Normal.
Sep 22 2016, 1:05 PM · Photoacoustics, Bugzilla, MITK
• groehl updated the task description for T19608: Photoacoustic Simulations.
Sep 22 2016, 1:03 PM · Photoacoustics, Bugzilla, MITK
• groehl claimed T19608: Photoacoustic Simulations.
Sep 22 2016, 12:57 PM · Photoacoustics, Bugzilla, MITK
• groehl added a comment to T20004: OpenIGTLink connection to tracking data streams is not working.

I'm pretty sure Dominique and I worked on a solution on that at a NAVI hackfest..
I'll get in touch with her when she comes back and we will look into this.

Sep 22 2016, 12:56 PM · MITK
• groehl committed rMITKc127884982df: photoacoustic light source now uses constants as expected xml tags (authored by • groehl).
photoacoustic light source now uses constants as expected xml tags
Sep 22 2016, 12:55 PM
• groehl committed rMITKbe2454833fd8: xml tag to const string refactoring (authored by • groehl).
xml tag to const string refactoring
Sep 22 2016, 12:55 PM
• groehl committed rMITK6f535b268b77: refactored FatTissueGenerator to not use magic number pattern (authored by • groehl).
refactored FatTissueGenerator to not use magic number pattern
Sep 22 2016, 12:55 PM
• groehl committed rMITK9effba82dd4c: refactored PhotoacousticVessel to be more readable (authored by • groehl).
refactored PhotoacousticVessel to be more readable
Sep 22 2016, 12:55 PM
• groehl committed rMITKbff4014f3d0c: refactored photoacoustic volume to be more readable and not contain too many… (authored by • groehl).
refactored photoacoustic volume to be more readable and not contain too many…
Sep 22 2016, 12:55 PM
• groehl committed rMITK0bc12c443bfd: refactored constructor of mitk::Photoacoustic3d volume. This will break the MBI… (authored by • groehl).
refactored constructor of mitk::Photoacoustic3d volume. This will break the MBI…
Sep 22 2016, 12:55 PM

Sep 16 2016

• groehl triaged T19989: MITK Youtube channel as Normal priority.
Sep 16 2016, 10:35 AM · Restricted Project, MITK
• groehl triaged T19987: Record Videos as Normal priority.
Sep 16 2016, 10:35 AM · Restricted Project, MITK
• groehl triaged T19985: MITK Videos as Normal priority.
Sep 16 2016, 10:34 AM · Restricted Project, MITK
• groehl added a parent task for T19989: MITK Youtube channel: T19985: MITK Videos.
Sep 16 2016, 10:34 AM · Restricted Project, MITK
• groehl added a subtask for T19985: MITK Videos: T19989: MITK Youtube channel.
Sep 16 2016, 10:34 AM · Restricted Project, MITK
• groehl updated the task description for T19989: MITK Youtube channel.
Sep 16 2016, 10:31 AM · Restricted Project, MITK
• groehl updated the task description for T19989: MITK Youtube channel.
Sep 16 2016, 10:31 AM · Restricted Project, MITK
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