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graser (Bastian Graser)
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User Since
Aug 1 2016, 12:10 PM (163 w, 2 d)

Recent Activity

Aug 2 2016

graser added projects to T18566: Most 3D segmentation tools cause crash on 2D image: MITK, Bugzilla.
Aug 2 2016, 10:17 AM · Bugzilla, MITK
graser added projects to T18066: MITK does not load or visualize jpeg-compressed DCM files properly: MITK, Bugzilla.
Aug 2 2016, 10:14 AM · Bugzilla, MITK
graser added a comment to T18066: MITK does not load or visualize jpeg-compressed DCM files properly.

It is properly a problem in ITK.
When i try to read the DCM file using ITKSimple, i get the same problem.

Aug 2 2016, 10:14 AM · Bugzilla, MITK
graser added a comment to F1140: bug.zip.

Screenshots and DCM Data

Aug 2 2016, 10:14 AM
graser added a comment to F1123: test.zip.

2D test image

Aug 2 2016, 10:12 AM
graser added a comment to T17787: Most 3D Segmentation-Tools cause Crash when applied on 2D Image.

Load the attached 2D image.

Aug 2 2016, 10:12 AM · MITK (2014-10), Bugzilla
graser added projects to T17787: Most 3D Segmentation-Tools cause Crash when applied on 2D Image: MITK, Bugzilla.
Aug 2 2016, 10:12 AM · MITK (2014-10), Bugzilla
graser added a comment to F1105: test2.jpg.

screenshot2

Aug 2 2016, 10:11 AM
graser added a comment to F1107: test3.jpg.

screenshot3

Aug 2 2016, 10:11 AM
graser added a comment to T17434: 3D interpolation produces strange results depending on image spacing.

I have another image (standard direction) with spacing of 40, 40, 48 and also get strange results. See screenshot3. Here, the manually segmented layer is not fully included in the interpolation.

Aug 2 2016, 10:11 AM · Bugzilla, MITK
graser added projects to T17434: 3D interpolation produces strange results depending on image spacing: MITK, Bugzilla.
Aug 2 2016, 10:11 AM · Bugzilla, MITK
graser added a comment to T17434: 3D interpolation produces strange results depending on image spacing.

screenshot1

Aug 2 2016, 10:11 AM · Bugzilla, MITK
graser added a comment to T17434: 3D interpolation produces strange results depending on image spacing.

screenshot2

Aug 2 2016, 10:11 AM · Bugzilla, MITK
graser added a comment to T17434: 3D interpolation produces strange results depending on image spacing.

screenshot3

Aug 2 2016, 10:11 AM · Bugzilla, MITK
graser added a comment to F1106: test1.jpg.

screenshot1

Aug 2 2016, 10:11 AM
graser added projects to T17353: Segmentation 2D interpolation not working anymore: MITK, Bugzilla.
Aug 2 2016, 10:11 AM · Bugzilla, MITK
graser added projects to T17313: CurveModelInteractor was renamed to MitralModelInteractor: MITK, Bugzilla.
Aug 2 2016, 10:11 AM · Bugzilla, MITK
graser added a comment to T17313: CurveModelInteractor was renamed to MitralModelInteractor.

[a74f05]: Merge branch 'bug-17313-statemachineRenameCurveModelToMitralModel'

Merged commits:

2014-02-24 11:26:24 Bastian Graser [e4327f]
Renamed CurveModel to MitralModel

Aug 2 2016, 10:11 AM · Bugzilla, MITK
graser added projects to T17209: 4D datatypes are not rendered properly: MITK, Bugzilla.
Aug 2 2016, 10:10 AM · MITK (2016-11), Bugzilla
graser added projects to T16616: Statistics Plugin: "Copy to Clipboard" copies values in mixed german/english numbering style: MITK, Bugzilla.
Aug 2 2016, 10:09 AM · MITK (2014-03), Bugzilla
graser added projects to T16610: Editing and Adding Levelwindow Presets Definition is not working well: MITK, Bugzilla.
Aug 2 2016, 10:09 AM · MITK (2014-03), Bugzilla
graser added projects to T16604: LevelWindow Documentation does not mention how editfields work: MITK, Bugzilla.
Aug 2 2016, 10:09 AM · Bugzilla, MITK
graser added projects to T16605: LevelWindow image Selection not distinct: MITK, Bugzilla.
Aug 2 2016, 10:09 AM · Bugzilla, MITK
graser added a comment to T16599: LevelWindow scales autocorrection is strange.

Maybe somehow connected to T15363 ?

Aug 2 2016, 10:09 AM · Bugzilla, MITK
graser added projects to T16599: LevelWindow scales autocorrection is strange: MITK, Bugzilla.
Aug 2 2016, 10:09 AM · Bugzilla, MITK
graser added a comment to T16524: 4D Segmentations are not loaded correctly.

Looked at mitkItkImageFileReader.cpp at line 79
after calling

Aug 2 2016, 10:09 AM · MITK (2014-03), Bugzilla
graser added projects to T16524: 4D Segmentations are not loaded correctly: MITK, Bugzilla.
Aug 2 2016, 10:09 AM · MITK (2014-03), Bugzilla
graser added a comment to T16508: Extended Legacy Statemachine to recognize SHFT+RMB for MBI Mitralyzer Plugin.

[b296fe]: Merge branch 'bug-16508-StatemachineExtension'

Merged commits:

2013-11-26 14:52:34 Bastian Graser [a8d723]
Added Shift+RMB and Shift+LMB interactions and states to implement

Aug 2 2016, 10:09 AM · Bugzilla, MITK
graser added a comment to T16508: Extended Legacy Statemachine to recognize SHFT+RMB for MBI Mitralyzer Plugin.

New remote branch pushed: bug-16508-StatemachineExtension

Aug 2 2016, 10:09 AM · Bugzilla, MITK
graser added projects to T16508: Extended Legacy Statemachine to recognize SHFT+RMB for MBI Mitralyzer Plugin: MITK, Bugzilla.
Aug 2 2016, 10:09 AM · Bugzilla, MITK
graser added a comment to F1086: screen2.png.

screenshot

Aug 2 2016, 10:08 AM
graser added projects to T16473: 0.5 offset in Fast Marching Segmentation Tool: MITK, Bugzilla.
Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added projects to T16472: Live Wire: Moving control points not always possible: MITK, Bugzilla.
Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added a comment to T16469: Segmentation crashes when mixing up 3D and 4D images.

If you do it the other way around, MITK produces a memory leak:

Aug 2 2016, 10:08 AM · MITK (2013-12), Bugzilla
graser added a comment to T16469: Segmentation crashes when mixing up 3D and 4D images.

Currently it seems that the Image-Geometry and the Segmentation-Geometry are checked to be equal! Otherwise there is a warning. Additionally, A warning is shown to indicate that a reinit is necessary, when the image-combobx has changed (?).

Aug 2 2016, 10:08 AM · MITK (2013-12), Bugzilla
graser added projects to T16469: Segmentation crashes when mixing up 3D and 4D images: MITK, Bugzilla.
Aug 2 2016, 10:08 AM · MITK (2013-12), Bugzilla
graser added a comment to T16469: Segmentation crashes when mixing up 3D and 4D images.

[393e6f]: Merge branch 'bug-16469-segmentationwarning'

Merged commits:

2013-11-27 14:59:41 Bastian Graser [18f136]
checking world-geometry with selected image and segmentation node geometry

Aug 2 2016, 10:08 AM · MITK (2013-12), Bugzilla
graser added projects to T16466: Live Wire can cause MITK to crash: MITK, Bugzilla.
Aug 2 2016, 10:08 AM · MITK (2013-12), Bugzilla
graser added a comment to F1085: screen.png.

screenshot

Aug 2 2016, 10:08 AM
graser added projects to T16460: Performing Import Folder / CD several times causes strange behavior: MITK, Bugzilla.
Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added a comment to T16436: New NSIS Releases do not work with CMake before 2.8.11.

Apparently CMake was not the problem.
The problem is NSIS

Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added a comment to T16335: Geometry Problem - Images are Misaligned.

Thanks michael!

Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added a comment to T16335: Geometry Problem - Images are Misaligned.

i am having a look at this issue

Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added a comment to T16316: Do not rely on SNC geometry in mitkPointSetVtkMapper2D.

The patch seems fine.

Aug 2 2016, 10:08 AM · MITK (2014-03), Bugzilla
graser added a comment to T16290: Create smoothed Polygon does not smooth.

Has been fixed apparently.

Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added projects to T16290: Create smoothed Polygon does not smooth: MITK, Bugzilla.
Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added projects to T16288: Geometry3D::SetIndexToWorld(..) should apply some checks on the matrix: MITK, Bugzilla.
Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added a comment to T16243: Create an IndexToWorld function with discrete Index (mitk::index3D) as parameter.

New remote branch pushed: bug-16243-NewIndexToWorldFunction

Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added a comment to T16243: Create an IndexToWorld function with discrete Index (mitk::index3D) as parameter.

[6f7fd1]: Merge branch 'bug-16243-NewIndexToWorldFunction'

Merged commits:

2014-01-15 19:19:39 Bastian Graser [f8539c]
added IndexToWorld method for itk::index and mitk::index3d

Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added projects to T16242: Crosshair visualization does not correspond to index coordinates in status bar: MITK, Bugzilla.
Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added projects to T16243: Create an IndexToWorld function with discrete Index (mitk::index3D) as parameter: MITK, Bugzilla.
Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added a comment to T16240: Improving mitkImageWriterTest.

What is the current status here??

Aug 2 2016, 10:08 AM · Bugzilla, MITK
graser added a comment to F1063: new 2.txt.

compiler output

Aug 2 2016, 10:07 AM
graser added a comment to T16226: Current MITK Superbuild causes memory leak with Visual Studio 2012.

Nightly Dartclients work!

Aug 2 2016, 10:07 AM · Bugzilla, MITK
graser added projects to T16226: Current MITK Superbuild causes memory leak with Visual Studio 2012: MITK, Bugzilla.
Aug 2 2016, 10:07 AM · Bugzilla, MITK
graser added a comment to T16226: Current MITK Superbuild causes memory leak with Visual Studio 2012.

The problem lies within visual studio.

Aug 2 2016, 10:07 AM · Bugzilla, MITK
graser added projects to T16187: 4D Images cause crashes in Segmentation Plugin: MITK, Bugzilla.
Aug 2 2016, 10:07 AM · MITK (2013-09), Bugzilla
graser added projects to T16173: Preset definition changing not correctly indexed: MITK, Bugzilla.
Aug 2 2016, 10:07 AM · Bugzilla, MITK
graser added a comment to T16156: random crash when creating clipping plane.

i have a look

Aug 2 2016, 10:07 AM · MITK (2013-09), Bugzilla
graser added a comment to T16156: random crash when creating clipping plane.

Crashes in QmitkDeformableClippingPlaneView.cpp
in line 381

Aug 2 2016, 10:07 AM · MITK (2013-09), Bugzilla
graser added a comment to T16156: random crash when creating clipping plane.

Under windows the clipping plane plugin is always crashing when selecting an image in the datamanager and clicking the button "Create new clippping plane"

Aug 2 2016, 10:07 AM · MITK (2013-09), Bugzilla
graser added a comment to T16156: random crash when creating clipping plane.

Bug only occurs, when segmentation plugin was activated before.

Aug 2 2016, 10:07 AM · MITK (2013-09), Bugzilla
graser added a comment to T16156: random crash when creating clipping plane.

The bug appears when the segmentation view is started but deactivated (in the background).

Aug 2 2016, 10:07 AM · MITK (2013-09), Bugzilla
graser added projects to T16118: Philips 3D Ultrasound DICOMs have wrong spacing: MITK, Bugzilla.
Aug 2 2016, 10:07 AM · Bugzilla, MITK
graser added a comment to T16118: Philips 3D Ultrasound DICOMs have wrong spacing.

New remote branch pushed: bug-16118-philipsdicom

Aug 2 2016, 10:07 AM · Bugzilla, MITK
graser added a comment to T16115: Geometry of PointSet inconsistent and not considered in PointSetWriter.

In my opinion we should stay as close as possible to ITK.
In ITK there is no geometry in Pointsets.
Therefor i would change the points before saving instead of saving an additionaly geometry.

Aug 2 2016, 10:07 AM · MITK (2015-05-2), Bugzilla
graser added a comment to T15990: Setting iof Geometry-Variables shows unexpected behavior.

mit SetIndexToWorldTransform(..) setzt man eine Transformation (bestehend aus einer Matrix und einem Vector). Das Spacing ist in der Matrix eingrechnet, somit wird auch das Spacing überschrieben. Sofern kommt da normalerweise nicht dasselbe raus.

Aug 2 2016, 10:06 AM · Bugzilla, MITK
graser added a comment to T15990: Setting iof Geometry-Variables shows unexpected behavior.

As the behavior is not unexpected, i close this bug.

Aug 2 2016, 10:06 AM · Bugzilla, MITK
graser added a comment to T15990: Setting iof Geometry-Variables shows unexpected behavior.

In my opinion it would be more intuitive to separate the spacing information from the matrix.

Aug 2 2016, 10:06 AM · Bugzilla, MITK
graser added a comment to T15892: SlicedGeometry3D does not reorient slices about correct center.

I am very sorry for the late reply. Did not see that bug.

Aug 2 2016, 10:06 AM · Bugzilla, MITK
graser added a comment to T15486: Transformation of a geometry by a vtkMatrix.

Hi Michael, whats the status?
is this solved?

Aug 2 2016, 10:04 AM · MITK (2016-11), Bugzilla
graser added a comment to T15354: Datastoragecombobox causes crash.

[e74202]: Merge branch 'bug-15354-datastoragecombobox'

Merged commits:

2013-06-11 18:39:19 Bastian Graser [b82f25]
added secutiry check to prevent crash

Aug 2 2016, 10:04 AM · Bugzilla, MITK
graser added projects to T15354: Datastoragecombobox causes crash: MITK, Bugzilla.
Aug 2 2016, 10:04 AM · Bugzilla, MITK
graser added a comment to T15354: Datastoragecombobox causes crash.

New remote branch pushed: bug-15354-datastoragecombobox

Aug 2 2016, 10:04 AM · Bugzilla, MITK
graser added a comment to T15221: Compatibility of mitk data types to vtk/itk/vnl data types.

I am also confronted with this task now.

Aug 2 2016, 10:03 AM · Bugzilla, MITK
graser added a comment to T15170: Integrate morphological operators into segmentation plugin.

todo: delete mitkErodeTool etc.

Aug 2 2016, 10:03 AM · Bugzilla, MITK
graser added a comment to T15170: Integrate morphological operators into segmentation plugin.

New remote branch pushed: bug-15170-morpho4

Aug 2 2016, 10:03 AM · Bugzilla, MITK
graser added a comment to T15170: Integrate morphological operators into segmentation plugin.

New remote branch pushed: bug-15170-morpho2

Aug 2 2016, 10:03 AM · Bugzilla, MITK
graser added a comment to T15170: Integrate morphological operators into segmentation plugin.

New remote branch pushed: bug-15170-morpho6

Aug 2 2016, 10:03 AM · Bugzilla, MITK
graser added a comment to T15170: Integrate morphological operators into segmentation plugin.

New remote branch pushed: bug-15170-morpho

Aug 2 2016, 10:03 AM · Bugzilla, MITK
graser added a comment to T15170: Integrate morphological operators into segmentation plugin.

Moved to new GUI .. everything done so far.
if no errors occur, this bug can be closed

Aug 2 2016, 10:03 AM · Bugzilla, MITK
graser added a comment to T15170: Integrate morphological operators into segmentation plugin.

New remote branch pushed: bug-15170-morpho3

Aug 2 2016, 10:03 AM · Bugzilla, MITK
graser added projects to T15170: Integrate morphological operators into segmentation plugin: MITK, Bugzilla.
Aug 2 2016, 10:03 AM · Bugzilla, MITK
graser added a comment to T15068: UI redesign of segmentation plugin.

Morphological Operators moved to new widget. Implementation outsourced into module. 4D support enabled. deleted depcreated morphological tools.

Aug 2 2016, 10:03 AM · MITK (2013-09), Bugzilla
graser added a comment to T15068: UI redesign of segmentation plugin.

Morphological Operations were implemented

Aug 2 2016, 10:03 AM · MITK (2013-09), Bugzilla
graser added a comment to T15013: ExtractSliceFilter uses wrong geometry.

We assume that at Joesphs indicated position in the code, extractSliceFilter is called with an image geometry, though it is expecting a bounding geometry.

Aug 2 2016, 10:03 AM · Bugzilla, MITK
graser added projects to T14605: Statistics Bundle: No values when image and line is selected: MITK, Bugzilla.
Aug 2 2016, 10:01 AM · MITK (2015-05-2), Bugzilla
graser added projects to T14604: Statistic Bundle crashes when mask does not fit image: MITK, Bugzilla.
Aug 2 2016, 10:01 AM · MITK (2013-03), Bugzilla
graser added a comment to T14596: Measurement Tools not working correctly when planes are rotated.

A solution would be NOT to limit the measurement Interactions by Image / World geometry bounds. I do not think there are any disadvantages in doing so.

Aug 2 2016, 10:01 AM · Bugzilla, MITK
graser added a comment to T14598: Crash on MacOS 10.8.2 when saving project.

Hash of tested Version: 04e09a17

Aug 2 2016, 10:01 AM · Bugzilla, MITK
graser added projects to T14596: Measurement Tools not working correctly when planes are rotated: MITK, Bugzilla.
Aug 2 2016, 10:01 AM · Bugzilla, MITK
graser added projects to T14598: Crash on MacOS 10.8.2 when saving project: MITK, Bugzilla.
Aug 2 2016, 10:01 AM · Bugzilla, MITK
graser added projects to T14601: Image Statistic sometimes not working: MITK, Bugzilla.
Aug 2 2016, 10:01 AM · MITK (2013-06), Bugzilla
graser added a comment to T14580: Allow measurement on all data with geometry.

Also, if image is a segmentation, measurement is not possible.

Aug 2 2016, 10:01 AM · Bugzilla, MITK
graser added a comment to T14458: Restore gcc 4.1 compatibility - abs(float) error.

Thanks for the correction.
Yeah, apparently this was a bug.
The new behavior you describe is how it should be!

Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added a comment to T14392: FitGeometry never set back ChangeImageGeometryConsideringOriginOffset.

In the current source code, there is no call
ChangeImageGeometryConsideringOriginOffset(false)
in the FitGeometry method anymore.

Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added a comment to T14392: FitGeometry never set back ChangeImageGeometryConsideringOriginOffset.

i'll check it out

Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added a comment to T14173: image cropper crashes with 2d images.

An extra slice is produced, which is initialized with the value "0". This is "grey" in CT images.

Aug 2 2016, 10:00 AM · MITK (2013-06), Bugzilla
graser added a comment to T14173: image cropper crashes with 2d images.

Apparently this is done un purpose:

Aug 2 2016, 10:00 AM · MITK (2013-06), Bugzilla
graser added a comment to T14173: image cropper crashes with 2d images.

Correction: Padding is not really done on purpose.

Aug 2 2016, 10:00 AM · MITK (2013-06), Bugzilla