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Aug 2 2016

muellerm added a comment to T12821: Added persistence caparbilities for Debug options in CameraCalibration Module.

changing bug status to confirmed for all bugs that are currently not in progress

Aug 2 2016, 9:56 AM · Bugzilla, MITK
muellerm added a comment to T12821: Added persistence caparbilities for Debug options in CameraCalibration Module.

[71e2ef]: Merge branch 'bug-12821-rework-endodebug-class'

Merged commits:

2012-08-10 21:14:40 Michael Mueller [330d44]
reworked endodebug: if debug output dir is set no images are shown

Aug 2 2016, 9:56 AM · Bugzilla, MITK
muellerm added projects to T12758: Segmentation crashes in ToFUtil: MITK, Bugzilla.
Aug 2 2016, 9:56 AM · MITK (2012-09), Bugzilla
muellerm added a comment to T12194: Strange behavior when selecting multiple different measurement tools.

jap if there are no more errors in the current RC this can be closed

Aug 2 2016, 9:54 AM · Bugzilla, MITK
muellerm added a comment to T12187: The Mesh Decimation Module documentation needs to be subpaged properly.

specifying as release fix. this is a trivial but necessary change for a clean documentation

Aug 2 2016, 9:54 AM · Bugzilla, MITK
muellerm added a comment to T12187: The Mesh Decimation Module documentation needs to be subpaged properly.

[af4235]: Merge branch 'bug-12187-meshdecimation-subpage'

Merged commits:

2012-06-13 15:41:05 Michael Mueller [d8e984]
meshdecimation now subpaged properly

Aug 2 2016, 9:54 AM · Bugzilla, MITK
muellerm added a comment to T12194: Strange behavior when selecting multiple different measurement tools.

[cfc0e2]: Merge branch 'bug-12194-strange-behavior-when-selecting-multiple-diffe

Merged commits:

2012-06-13 17:04:57 Michael Mueller [872cb4]
fixed bug with unitialized figures
added feature to jump to planar figures when selected in datamanager

Aug 2 2016, 9:54 AM · Bugzilla, MITK
muellerm added a comment to T11950: Planarfigure interaction only works once.

resetting to confirmed. please close if evaluated as fixed during bugsquashing testing

Aug 2 2016, 9:54 AM · MITK (2012-06), Bugzilla
muellerm added a comment to T11950: Planarfigure interaction only works once.

[1e2828]: Merge branch 'bug-11950-RedesignMeasurementToolBox'

Merged commits:

2012-06-13 12:51:34 Michael Mueller [209a26]
deactivatin actions menu while a new planar figure is initialized

Aug 2 2016, 9:54 AM · MITK (2012-06), Bugzilla
muellerm added a comment to T11838: move the mesh decimation plugin to the open source MITK.

[5f8c29]: Merge branch 'bug-11838-move-meshdecimation-to-public-mitk'

Merged commits:

2012-05-03 15:41:46 Michael Mueller [e8ddf3]
deleted mesh decimation from mbi repo

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added projects to T11838: move the mesh decimation plugin to the open source MITK: MITK, Bugzilla.
Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11838: move the mesh decimation plugin to the open source MITK.

[0778b0]: Merge branch 'bug-11838-move-meshdecimation-to-public-mitk'

Merged commits:

2012-05-03 15:52:32 Michael Mueller [f7a229]
added Mesh Decimation plugin for MITK ExtApp

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11838: move the mesh decimation plugin to the open source MITK.

moving bug to mitk

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11838: move the mesh decimation plugin to the open source MITK.

[3a83d5]: Merge branch 'bug-11838-move-meshdecimation-to-public-mitk'

Merged commits:

2012-05-03 15:33:08 Michael Mueller [ff10c1]
added documentation for meshdecimation

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11819: OpenCV built by Superbuild should use Qt if MITK is also built with Qt.

[5ac7b9]: Merge branch 'bug-11819-OpenCV-qt-usage'

Merged commits:

2012-05-02 14:58:49 Michael Mueller [94dadd]
COMP: explicitly deactivated QT_OPENGL support since this is not necessarily available anywhere

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11819: OpenCV built by Superbuild should use Qt if MITK is also built with Qt.

[9af9a2]: Merge branch 'bug-11819-OpenCV-qt-usage'

Merged commits:

2012-05-02 14:40:03 Michael Mueller [a3e1da]
added QT usage by OpenCV if QT is used in MITK

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11819: OpenCV built by Superbuild should use Qt if MITK is also built with Qt.

tested locally, if errors occur reopen

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11819: OpenCV built by Superbuild should use Qt if MITK is also built with Qt.

closing for now. reopen for bugs

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added projects to T11819: OpenCV built by Superbuild should use Qt if MITK is also built with Qt: MITK, Bugzilla.
Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11797: resetting bounding box in image cropper does not work as expected.

changing bug status to confirmed for all bugs that are currently not in progress

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11796: provide a possibility to crop an image using a binary image as mask.

ok then we can close the bug. and wait for his fix

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11799: when saving an image node that has a "." in its name the application returns "no suitable file format found".

[840a54]: Merge branch 'bug-11799-handling-of-node-names-with-special-characters

Merged commits:

2012-05-02 16:38:04 Michael Mueller [db98e1]
reworked code of CommonFunctionality::SaveImage: nrrd is the default file format if no or an unknown extension is given

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11799: when saving an image node that has a "." in its name the application returns "no suitable file format found".

closing for now. reopen for bugs

Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added projects to T11799: when saving an image node that has a "." in its name the application returns "no suitable file format found": MITK, Bugzilla.
Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added projects to T11797: resetting bounding box in image cropper does not work as expected: MITK, Bugzilla.
Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added projects to T11796: provide a possibility to crop an image using a binary image as mask: MITK, Bugzilla.
Aug 2 2016, 9:53 AM · Bugzilla, MITK
muellerm added a comment to T11727: Long filenames in DataManager.

adding matt to cc list

Aug 2 2016, 9:53 AM · MITK (2012-06), Bugzilla
muellerm added projects to T11727: Long filenames in DataManager: MITK, Bugzilla.
Aug 2 2016, 9:53 AM · MITK (2012-06), Bugzilla
muellerm added projects to T11255: after accepting the 3D interpolation a new segmentation is created instead of replacing the old one: MITK, Bugzilla.
Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added projects to T11254: a reinit will be executed when a new segmentation is created: MITK, Bugzilla.
Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added projects to T11253: image and segmentation image get hidden after creating a new segmentation: MITK, Bugzilla.
Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added a comment to T11215: beautify log console.

[ed6b20]: Merge branch 'bug-11215-beautify-log-console'

Merged commits:

2012-03-10 21:12:56 Michael Mueller [cd7349]
customized blueberry console with nice icons and an ShowAdvancedFields mode. if not activated only level and message will be shown. the value is made persistent through the pref service

Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added a comment to T11215: beautify log console.

[a6b932]: Merge branch 'bug-11215-beautify-log-console'

Merged commits:

2012-03-20 15:54:52 Michael Mueller [a0d830]
added icon text, made last column stretch

Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added projects to T11215: beautify log console: MITK, Bugzilla.
Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added a comment to T11129: mitkPackageTest fails on ubuntu 11.10 dartclient.

ok i have a look

Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added a comment to T11129: mitkPackageTest fails on ubuntu 11.10 dartclient.

[703f9c]: Merge branch 'bug-11129-packagetest-failing'

Merged commits:

2012-03-21 15:47:16 Michael Mueller [8ff811]
forcing PackageTest to be run in serial

Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added a comment to T11129: mitkPackageTest fails on ubuntu 11.10 dartclient.

will work on it next bugsquashing

Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added a comment to T11129: mitkPackageTest fails on ubuntu 11.10 dartclient.

works on my dartclient, still failing on two other machines but with different errors:

Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added a comment to T11129: mitkPackageTest fails on ubuntu 11.10 dartclient.

sascha, please have look at mbi074. the package test fails because doxygen is not found (simple):
http://mbits/cdash/testSummary.php?project=2&name=mitkPackageTest&date=2012-06-13

Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added a comment to T11129: mitkPackageTest fails on ubuntu 11.10 dartclient.

andi same accounts for you: package test is failing on
mbimac05.inet.dkfz-heidelberg.de

Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added projects to T11129: mitkPackageTest fails on ubuntu 11.10 dartclient: MITK, Bugzilla.
Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added a comment to T11129: mitkPackageTest fails on ubuntu 11.10 dartclient.

uhhm running the command line as it is run by the test as my local user "mmueller"

Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added a comment to T11129: mitkPackageTest fails on ubuntu 11.10 dartclient.

seems to be a time out problem

Aug 2 2016, 9:52 AM · Bugzilla, MITK
muellerm added a comment to T11038: Improve folder layout to simplify setup of different applications.

i like the layout as proposed by sascha. concerning the hooks: the script currently investigates if a commit touches a path beginning with "Core" to check if this commit must be checked for a modification flag. so by removing CoreUI Qmitk, etc. is not checked anymore.
if Marco agrees i can extend the script so that it uses a *list of path beginnings* instead of just "Core". then all Modules/plugins under special "Core" surveillance are simply put into this list. i dont see any problem here. except that this change must clearly communicated.

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10893: add the possibility to EndoDebug class to save images to a certain directory.

fixed. will open new bug for errors

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added projects to T10893: add the possibility to EndoDebug class to save images to a certain directory: MITK, Bugzilla.
Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10893: add the possibility to EndoDebug class to save images to a certain directory.

[8ab225]: Merge branch 'bug-10893-endodebug-save-images'

Merged commits:

2012-02-02 12:20:52 Michael Mueller [3bf211]
added the possibility to save images in endodebug

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10825: Python wrapping does not work in MITK master.

closing super bug for feature development.
open bugs for issues

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10825: Python wrapping does not work in MITK master.

New remote branch pushed: bug-10825-python-wrapping-rework-comp

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10825: Python wrapping does not work in MITK master.

[61ce4f]: Merge branch 'bug-10825-python-wrapping-rework'

Merged commits:

2013-03-13 10:49:15 Michael Mueller [d3873c]
finally got most of the things working,ready to merge

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10825: Python wrapping does not work in MITK master.

[9f0c85]: Merge branch 'bug-10825-python-wrapping-rework-comp'

Merged commits:

2013-03-13 17:13:40 Michael Mueller [d80f21]
COMP: restored dicom resources file

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10825: Python wrapping does not work in MITK master.

currently not working on

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10825: Python wrapping does not work in MITK master.

jap, i`ll work on it friday.thx for the push

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10825: Python wrapping does not work in MITK master.

found a solution for failing cableswig build on ubuntu 11.10: the system cableswig seems to work fine

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10825: Python wrapping does not work in MITK master.

New remote branch pushed: bug-10825-python-wrapping-rework

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10825: Python wrapping does not work in MITK master.

gccxml error on ubuntu 11.10. continue integration on windows machine

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10825: Python wrapping does not work in MITK master.

work on bug again

Aug 2 2016, 9:51 AM · Bugzilla, MITK
muellerm added a comment to T10195: OpenCV produces superbuild errors.

hmm the output shows that the configure step for MITK does not work because Boost is not found:

Aug 2 2016, 9:50 AM · Bugzilla, MITK
muellerm added a comment to T10124: Enable Drag-Drop of Multiple Nodes.

hi matt, you can get the best info on the drag and drop behaviour and when those methods are called from here:
http://doc.qt.nokia.com/stable/model-view-programming.html#using-drag-and-drop-with-item-views

Aug 2 2016, 9:49 AM · Bugzilla, MITK
muellerm added projects to T10101: add reset method for mitk::Transform: MITK, Bugzilla.
Aug 2 2016, 9:49 AM · Bugzilla, MITK
muellerm added a comment to T10101: add reset method for mitk::Transform.

[a992c2]: Merge branch 'bug-10101-add-reset-method-for-Transform'

Aug 2 2016, 9:49 AM · Bugzilla, MITK
muellerm added a comment to T9870: [dashboard] DartClients failed to checkout CTK.

this is a line ending problem!!! there are obviously windows line endings which are automatically converted to unix style endings with my git settings. as a result the files are marked as modified and no master forwarding will work anymore. removing the whole git source should work for now. but the CTK repo should not contain any files with windows line endings

Aug 2 2016, 9:49 AM · Bugzilla, MITK
muellerm added a comment to T9870: [dashboard] DartClients failed to checkout CTK.

dartclients run as usual

Aug 2 2016, 9:49 AM · Bugzilla, MITK
muellerm added projects to T9794: Update Superbuild to use OpenCV 2.3 to avoid incompatibilities with the newest ffmpeg versions: MITK, Bugzilla.
Aug 2 2016, 9:48 AM · Bugzilla, MITK
muellerm added a comment to T9794: Update Superbuild to use OpenCV 2.3 to avoid incompatibilities with the newest ffmpeg versions.

[d3d5de]: Merge branch 'bug-9794-use-opencv2-3-in-superbuild'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
muellerm added a comment to T9727: NDITrackingDevice is smoothing tracking data.

adding myself to the cc list

Aug 2 2016, 9:48 AM · Bugzilla, MITK
muellerm added a comment to T9727: NDITrackingDevice is smoothing tracking data.

one comment: we should expect to get the raw data from a tracking device. any filtering/smoothing should be turned off by default

Aug 2 2016, 9:48 AM · Bugzilla, MITK
muellerm added a comment to T9595: add gcc preprocessor switch for debug output.

[bd67d0]: Merge branch 'bug-9595-gcc-preprocessor-switch-for-endo-debug-output'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
muellerm added a comment to T9532: add different type of transforms.

[f7c0ff]: Merge branch 'bug-9532-add-different-type-of-transforms'

Aug 2 2016, 9:48 AM · Bugzilla, MITK
muellerm added a comment to T9532: add different type of transforms.

finished so far

Aug 2 2016, 9:48 AM · Bugzilla, MITK
muellerm added projects to T9532: add different type of transforms: MITK, Bugzilla.
Aug 2 2016, 9:48 AM · Bugzilla, MITK
muellerm added projects to T9405: memory leak in module system: MITK, Bugzilla.
Aug 2 2016, 9:48 AM · Bugzilla, MITK
muellerm added a comment to T9405: memory leak in module system.

problem is the instatiation of a Module on the heap with new. the map is deleted regularly but the reserved memory for the Module objects inside the map is not freed

Aug 2 2016, 9:48 AM · Bugzilla, MITK
muellerm added projects to T9118: smoothed surface creation does not work any more: MITK, Bugzilla.
Aug 2 2016, 9:47 AM · Bugzilla, MITK
muellerm added a comment to T9117: type_info objects may get hidden visibility on gcc < 4.5.

This is not directly related to 8481, although the general problem is the same.

Aug 2 2016, 9:47 AM · Bugzilla, MITK
muellerm added a comment to T9117: type_info objects may get hidden visibility on gcc < 4.5.

related to T8481: problems with symbol visibility when using dlopen with RTLD_GLOBAL, dynamic_cast`s fail when used across shared object boundaries! adding dependency

Aug 2 2016, 9:47 AM · Bugzilla, MITK
muellerm added projects to T9117: type_info objects may get hidden visibility on gcc < 4.5: MITK, Bugzilla.
Aug 2 2016, 9:47 AM · Bugzilla, MITK
muellerm added a comment to T9115: [dashboard] Check highgui integration.

accidentally compiled with a local, misconfigured OpenCV build. superbuild recompile tonight, should work tomorrow

Aug 2 2016, 9:47 AM · Bugzilla, MITK
muellerm added a comment to T8997: Adapt Navigation Data Reader to new file format.

[9e6f5c]: Merge branch 'bug-8997-adapt-to-new-navidata-file-format-comp'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
muellerm added projects to T8997: Adapt Navigation Data Reader to new file format: MITK, Bugzilla.
Aug 2 2016, 9:47 AM · Bugzilla, MITK
muellerm added a comment to T8997: Adapt Navigation Data Reader to new file format.

[680c6d]: Merge branch 'bug-8997-adapt-to-new-navidata-file-format'

Aug 2 2016, 9:47 AM · Bugzilla, MITK
muellerm added a comment to T8920: helper object nodes are not shown although the preference "show helper object nodes" is enabled.

tested it again with the current HEAD ExtApp. the widget planes are not shown although they have a data object.

Aug 2 2016, 9:47 AM · Bugzilla, MITK
muellerm added projects to T8920: helper object nodes are not shown although the preference "show helper object nodes" is enabled: MITK, Bugzilla.
Aug 2 2016, 9:47 AM · Bugzilla, MITK
muellerm added a comment to T8920: helper object nodes are not shown although the preference "show helper object nodes" is enabled.

it may be that only helper objects that contain data are really shown. well, then its more or less a matter of definition what should be shown or not

Aug 2 2016, 9:47 AM · Bugzilla, MITK
muellerm added a comment to T8772: org.mitk.gui.qt.measurement crashes on second measurement.

related to T8481: problems with symbol visibility when using dlopen with RTLD_GLOBAL, dynamic_cast`s fail when used across shared object boundaries! adding dependency

Aug 2 2016, 9:46 AM · Bugzilla, MITK
muellerm added a comment to T8597: issues with navigationdatarecorder and serial communication.

fixed.

Aug 2 2016, 9:46 AM · Bugzilla, MITK
muellerm added projects to T8597: issues with navigationdatarecorder and serial communication: MITK, Bugzilla.
Aug 2 2016, 9:46 AM · Bugzilla, MITK
muellerm added a comment to T8597: issues with navigationdatarecorder and serial communication.

[6dd8f3]: Merge branch 'bug-8597-igt-issues'

Aug 2 2016, 9:46 AM · Bugzilla, MITK
muellerm added a comment to T8541: Move Transform Test and CameraIntrinsics test to the new open source module "CameraCalibration".

closing bug. work done

Aug 2 2016, 9:46 AM · Bugzilla, MITK
muellerm added a comment to T8541: Move Transform Test and CameraIntrinsics test to the new open source module "CameraCalibration".

[59e6cf]: Merge branch 'bug-8541-move-related-tests-to-camcalibration-module'

Aug 2 2016, 9:46 AM · Bugzilla, MITK
muellerm added a comment to T8541: Move Transform Test and CameraIntrinsics test to the new open source module "CameraCalibration".

[1809c1]: Merge branch 'bug-8541-move-related-tests-to-camcalibration-module'

Aug 2 2016, 9:46 AM · Bugzilla, MITK
muellerm added projects to T8541: Move Transform Test and CameraIntrinsics test to the new open source module "CameraCalibration": MITK, Bugzilla.
Aug 2 2016, 9:46 AM · Bugzilla, MITK
muellerm added a comment to T8481: Dynamic casts on registered extension classes may fail.

at first sight, the problem is not solved. using gcc (Ubuntu 4.4.3-4ubuntu5) 4.4.3 on Ubuntu 10.04, SandboxApp crashes in berryImageDescriptor.cpp line 31, while loading icons for the datamanager:

Aug 2 2016, 9:46 AM · Bugzilla, MITK
muellerm added a comment to T8481: Dynamic casts on registered extension classes may fail.

reopening this issue. there are still problems. when an object is instantiated inside the plugin dll and passed across shared object library borders, dynamic_cast`s wont work, i.e. they have different typeid`s
there are currently two related bugs: T8772 and T9117

Aug 2 2016, 9:46 AM · Bugzilla, MITK
muellerm added a comment to T8481: Dynamic casts on registered extension classes may fail.

maah, ok that solved it.

Aug 2 2016, 9:46 AM · Bugzilla, MITK
muellerm added a comment to T8477: Making Saving/Loading of 2D Images with 3D Geometry Information (e.g. 3D Rotation) possible.

Ingmar + Basti: Probably related to: 8477

Aug 2 2016, 9:45 AM · Bugzilla, MITK
muellerm added projects to T8431: port the three bundles org.mitk.gui.qt.pointsetinteraction, org.mitk.gui.qt.python.console, org.mitk.gui.qt.videoplayer to CTK: MITK, Bugzilla.
Aug 2 2016, 9:45 AM · Bugzilla, MITK
muellerm added a comment to T8357: Move calibration classes to own calibration module.

[30f5d9]: Merge branch 'bug-8357-camera-calibration-module'

Aug 2 2016, 9:45 AM · Bugzilla, MITK
muellerm added a comment to T8357: Move calibration classes to own calibration module.

[3d1358]: Merge branch 'bug-8357-camera-calibration-module'

Aug 2 2016, 9:45 AM · Bugzilla, MITK
muellerm added a comment to T8357: Move calibration classes to own calibration module.

[83d354]: Merge branch 'bug-8357-camera-calibration-module'

Aug 2 2016, 9:45 AM · Bugzilla, MITK