what about
keep S3, compareRanks and extract.workflow
but do not export (i.e. remove from namespace) compareRanks and extract.workflow. they can then only be accessed e.g. by challengeR:::compareRanks(). These might be of practical use.
?

I propose to turn off networks and exclude them from the report for now.
if this is solved, we can reintroduce them.
they are not essential I think. what do you think?

this will require a further package, put on hold for the moment

taskSubset is deprecated
there is now
subset(x, top, tasks)

• if top is specified subset to top algorithms (only applicable to single task challenges)
• if tasks is specified subset of tasks (only applicable to multi task challenges)

20 might be a sensible number

the sentence can be dropped. But wasn't it planned to revise the text in line with the paper in total?

In T27774#210741, @eisenman wrote:

Ok, weird. For me it says: "The top 5 out of 5 algorithms are considered."

1. it won't be more that I needed for the missing data description I guess;-) I still think that this sentence should be avoided if no subset is in fact used

this is more or less what I tried, ugliness is T27326. I think a ggplot solution mentioned there would be better

report gains new argument "dpi" to change resolution

currently It says "The top 0 out of 0 algorithms are considered." in my latest example

1. I think it will be confusing if it writes "top 5 of 5 algorithms", I would put an if
2. which changes? as.challenge does not have a full data attribute. The changes in subset have been done by you, see my comments in T27685.

yes I think so. maybe you have purrr (or dplyr) and ggplot loaded in the workspace.
packages in depends are loaded at startup (and we need these package to be available by the user). imports does not load the packages, functions of challengeR can however call them.
it is true that packages in depends should be minimize, but these are needed

the first sentence refers to the fact that no missings have been found in the data set. would rephrasing to "0 missing cases entered in the data set have been found" help? the next sentence is about cases which have been inserted by the sanity check. Would adding "However, ..." in between help?
If you have any other suggestions, I would be happy to include them

@eisenman I dont understand this task, could you give an example?

solved in T27338

networks should be replaced by some ggplot2 implementation, see
https://journal.r-project.org/archive/2017/RJ-2017-023/RJ-2017-023.pdf

lists of ggplot objects can now be handled like single ggplot objects, e.g. boxbplot(...) + xlab(...) will apply xlab() to every ggplot object

comes from significanceMap.data.frame

now as.challenge() as well as report contain extended information on missings and automatically inserted test cases.
@eisenman this changes the tests for as.challenge. Could you please 1. check whether the messages are well phrased and then 2. adapt tests, then 3. close task. Thanks!

now
e.g. if FUN="mean" (i.e. a character) or if FUN=mean (i.e. a function)
the column name will be "value_mean"

@eisenman error message might have changed, please check tests

@eisenman seems to come from "Blob plot similar to the one shown in Section \ref{blobByTask}" in visualizationAcrossTasks.Rmd. Could you please take care of it, you are more familiar with the restructured report

should be solved with T27294

report() gains new argument fig.format to specify figure output formats in case of clean=FALSE.
can be vector, e.g. fig.format=c('jpeg','png', 'pdf'), then 3 files are stored for each figure

actually it was

@eisenman worked at least for one test data set. I guess this can be closed

new function dendrogram(), also handles more informative titles ( T27411 ).
also updated in report

@eisenman could affect tests. please close when finished

@eisenman could affect tests. please close when finished