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Aug 2 2016

graser added projects to T14173: image cropper crashes with 2d images: MITK, Bugzilla.
Aug 2 2016, 10:00 AM · MITK (2013-06), Bugzilla
graser added a comment to T14117: Memory leak when using mitk::Image::GetVtkImageData.

The Reproduction code was incorrect. You need to load the image as Datanode and then cast it to an image to reproduce it. The memory leak is propably casue by smartpointer dependencies. here some code examples:

Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added a comment to T14117: Memory leak when using mitk::Image::GetVtkImageData.

Two more interesting examples:

Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added a comment to T14117: Memory leak when using mitk::Image::GetVtkImageData.

"GetVtkImageData" is called by a number of filters. e.g. ExtractSliceFilter. At the moment this memory leak makes it impossible to use these filters in an autonomous processing, where more than 6-7 images are handled.

Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added a comment to T14117: Memory leak when using mitk::Image::GetVtkImageData.

Bug will be fixed with the cahnges from T13953

Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added a comment to T14117: Memory leak when using mitk::Image::GetVtkImageData.

A workaround would be cloning of the image before calling getVtkData. I'm gonna investigate the source of the problem some other time.

Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added projects to T14117: Memory leak when using mitk::Image::GetVtkImageData: MITK, Bugzilla.
Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added a comment to T14070: Zooming and Panning speed increasing after closing project.

We began our research
In mitkDisplayInteractor.h
in the method:
void mitk::DisplayInteractor::ExecuteOperation(mitk::Operation * operation)

Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added projects to T14070: Zooming and Panning speed increasing after closing project: MITK, Bugzilla.
Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added projects to T14069: LiveWire crashes when point was deleted during segmentation: MITK, Bugzilla.
Aug 2 2016, 10:00 AM · Bugzilla, MITK
graser added projects to T13977: Paint Tool Feedback Contour for Preview looks a little strange: MITK, Bugzilla.
Aug 2 2016, 9:59 AM · Bugzilla, MITK
graser added a comment to T13978: Crash by reopening segmentation view.

A similar bug (maybe even same bug source) can be reproduced by the following

Aug 2 2016, 9:59 AM · MITK (2013-03), Bugzilla
graser added a comment to T13883: mitkImagePixelReadAccessor cannot be instanciated due to typos.

[57e31e]: Merge branch 'bug-13883-imageAccessor'

Merged commits:

2012-12-06 16:04:55 Bastian Graser [96a0f3]
COMP typedef of base class not available on linux

Aug 2 2016, 9:59 AM · Bugzilla, MITK
graser added a comment to T13883: mitkImagePixelReadAccessor cannot be instanciated due to typos.

New remote branch pushed: bug-13883-imageAccessor

Aug 2 2016, 9:59 AM · Bugzilla, MITK
graser added projects to T13883: mitkImagePixelReadAccessor cannot be instanciated due to typos: MITK, Bugzilla.
Aug 2 2016, 9:59 AM · Bugzilla, MITK
graser added a comment to T13883: mitkImagePixelReadAccessor cannot be instanciated due to typos.

[9a1b42]: Merge branch 'bug-13883-imageAccessor'

Merged commits:

2012-12-05 14:24:33 Bastian Graser [e3af41]
Corrected Typo and updated Test

Aug 2 2016, 9:59 AM · Bugzilla, MITK
graser added a comment to T13883: mitkImagePixelReadAccessor cannot be instanciated due to typos.

[db342d]: Merge branch 'bug-13883-imageAccessor'

Merged commits:

2012-12-06 16:18:33 Bastian Graser [091e85]
COMP added typedef from base class to derived class

Aug 2 2016, 9:59 AM · Bugzilla, MITK
graser added projects to T13803: 3D Polygon Model is not closed when segmentation contains border of image: MITK, Bugzilla.
Aug 2 2016, 9:59 AM · MITK (2013-09), Bugzilla
graser added a comment to F934: bug.png.

screenshot

Aug 2 2016, 9:59 AM
graser added a comment to T13751: Rotation Interaction in 3D Renderwindow activated.

New remote branch pushed: bug-13751-rotationIn3DRenderWindow

Aug 2 2016, 9:59 AM · MITK (2012-12), Bugzilla
graser added a comment to T13751: Rotation Interaction in 3D Renderwindow activated.

[4883d8]: Merge branch 'bug-13751-rotationIn3DRenderWindow'

Merged commits:

2012-12-05 17:55:30 Bastian Graser [653618]
Added check for 3D Renderwindow rotation

Aug 2 2016, 9:59 AM · MITK (2012-12), Bugzilla
graser added a comment to T13751: Rotation Interaction in 3D Renderwindow activated.

We found a solution.

Aug 2 2016, 9:59 AM · MITK (2012-12), Bugzilla
graser added projects to T13751: Rotation Interaction in 3D Renderwindow activated: MITK, Bugzilla.
Aug 2 2016, 9:59 AM · MITK (2012-12), Bugzilla
graser added a comment to T13689: ExtractSliceFilter misses modified call..

[aba33d]: Merge branch 'bug-13689-ExtractSliceFilter'

Merged commits:

2012-11-21 16:27:53 Bastian Graser [e45642]
Added a modified call inside the SetWorldGeometry function

Aug 2 2016, 9:59 AM · MITK (2012-12), Bugzilla
graser added a comment to T13689: ExtractSliceFilter misses modified call..

New remote branch pushed: bug-13689-ExtractSliceFilter

Aug 2 2016, 9:59 AM · MITK (2012-12), Bugzilla
graser added projects to T13689: ExtractSliceFilter misses modified call.: MITK, Bugzilla.
Aug 2 2016, 9:59 AM · MITK (2012-12), Bugzilla
graser added a comment to T13568: Geometry2D Project function causes deprecated warning.

[6ac612]: Merge branch 'bug-13568-GeoProjectFuncNEW'

Merged commits:

2012-11-28 15:01:38 Bastian Graser [3680e8]
COMP put comments around unused paramter

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13568: Geometry2D Project function causes deprecated warning.

New remote branch pushed: bug-13568-GeoProjectFuncNEW

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13568: Geometry2D Project function causes deprecated warning.

[632f83]: Merge branch 'bug-13568-Geo2DProjectFunction'

Merged commits:

2012-11-21 15:20:59 Bastian Graser [db680b]
Added new function for projection

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13568: Geometry2D Project function causes deprecated warning.

New remote branch pushed: bug-13568-Geo2DProjectFunction

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added projects to T13568: Geometry2D Project function causes deprecated warning: MITK, Bugzilla.
Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13568: Geometry2D Project function causes deprecated warning.

We did some research. According to the history books of MITK the function

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13531: Clone Method of 4D Pointset clones Geometry wrong.

.. Test fails under MacOS due to uninitialized points

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13531: Clone Method of 4D Pointset clones Geometry wrong.

[235a3c]: Merge branch 'bug-13531-ClonePointSet'

Merged commits:

2012-11-14 10:39:41 Bastian Graser [22daa8]
COMP Poinset contained uninitialized points. repaired this.

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13531: Clone Method of 4D Pointset clones Geometry wrong.

[fa2cf3]: Merge branch 'bug-13531-ClonePointSet'

Merged commits:

2012-11-08 15:01:54 Bastian Graser [8ee645]
geometry is now cloned before timesteps and points are set

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13531: Clone Method of 4D Pointset clones Geometry wrong.

Apparently, when you call "InsertPoint", you have to give world coordinates. Didnt see that. that clears the problem

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added projects to T13531: Clone Method of 4D Pointset clones Geometry wrong: MITK, Bugzilla.
Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13531: Clone Method of 4D Pointset clones Geometry wrong.

Clone method DOES have a bug.
when you clone a 4D pointset the resulting pointset is 3D because the geometry is cloned in a wrong way.

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13531: Clone Method of 4D Pointset clones Geometry wrong.

New remote branch pushed: bug-13531-ClonePointSet

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added projects to T13478: Total Variation Filter from BasicImageProcessing View causes crash: MITK, Bugzilla.
Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added projects to T13474: Saving Files in Directories with Umlaut ä ö ü ß causes Warning: MITK, Bugzilla.
Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13376: Shifted mouse position using manual segmentation tools.

We have a look

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added a comment to T13376: Shifted mouse position using manual segmentation tools.

Works for us

Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added projects to T13341: Rotate Planes in 4D Data very slow: MITK, Bugzilla.
Aug 2 2016, 9:58 AM · Bugzilla, MITK
graser added projects to T13213: Add SHIFT+Right Mouse Button Action to statemachine: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13213: Add SHIFT+Right Mouse Button Action to statemachine.

[e45e30]: Merge branch 'bug-13213-statemachineMitralPoints'

Merged commits:

2012-09-24 14:53:09 Bastian Graser [f08cef]
added shift and rightmousebuttonclick to statemachine

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13213: Add SHIFT+Right Mouse Button Action to statemachine.

finished! need CoreFlag please

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added projects to T13202: Extend mitk::SliceNavigator::ReorientSlices Method to enable distinct orientation: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13202: Extend mitk::SliceNavigator::ReorientSlices Method to enable distinct orientation.

[f3144b]: Merge branch 'bug-13202-ReorientSlices'

Merged commits:

2012-09-24 16:42:06 Bastian Graser [a2f58c]
added Test and fixed a bug

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13202: Extend mitk::SliceNavigator::ReorientSlices Method to enable distinct orientation.

Adjusted templates

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13161: Segmentation module causes crash on using wipe with 2d image.

for this issue, start checking at mitkPaintbrushTool.cpp line 117

Aug 2 2016, 9:57 AM · MITK (2012-12), Bugzilla
graser added a comment to T13161: Segmentation module causes crash on using wipe with 2d image.

Pushed a temporary solution to branch bug-13161-wipe2D.

Aug 2 2016, 9:57 AM · MITK (2012-12), Bugzilla
graser added a comment to T13161: Segmentation module causes crash on using wipe with 2d image.

Hm.. apparently only works in debug mode.
In release modethe feedback contour is not visible

Aug 2 2016, 9:57 AM · MITK (2012-12), Bugzilla
graser added a comment to T13161: Segmentation module causes crash on using wipe with 2d image.

We took a look at it:

Aug 2 2016, 9:57 AM · MITK (2012-12), Bugzilla
graser added projects to T13157: mitk::Image::GetPixelValueByIndex missing a check: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13150: MITK crash when click outside 3D image, when 4D image is also loaded..

Forgot something:

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added projects to T13150: MITK crash when click outside 3D image, when 4D image is also loaded.: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added projects to T13148: MITK crashes when right-click on link in documentation: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added projects to T13147: Level is changing when Window is set to 0: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13109: Create possibilites to rotate renderwindows by code.

[d62b00]: Merge branch 'bug-13109-RenderPlaneRotation'

Merged commits:

2012-11-08 18:27:07 Bastian Graser [b43805]
added a deprecated warning to RotateToPoint function

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13109: Create possibilites to rotate renderwindows by code.

[8c5569]: Merge branch 'bug-13109-RenderPlaneRotation'

Merged commits:

2012-11-14 16:33:43 Bastian Graser [9b7550]
COMP Reinitialized Planes is called only once after all rotations are finished

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13109: Create possibilites to rotate renderwindows by code.

For rotating the renderwindows, the following "new" method is most appropiate:

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13109: Create possibilites to rotate renderwindows by code.

is not really distinct. It is changing the normal of a stack of slices (slicedGeometry). Yet, the rotation of the slices around the normal is not well defined. So this can produce strange results.

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13109: Create possibilites to rotate renderwindows by code.

The operation "AcRestorePlaneOperation" is not that great, since you need all kind of information for that plane (spacing, extend, etc...)

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added projects to T13109: Create possibilites to rotate renderwindows by code: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13109: Create possibilites to rotate renderwindows by code.

New remote branch pushed: bug-13109-RenderPlaneRotation

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13109: Create possibilites to rotate renderwindows by code.

Rotated using possibilty 1 (after some manual rotation)

poss1_b.png (1×1 px, 294 KB)

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to F897: poss1_b.png.

Rotated using possibilty 1 (after some manual rotation)

Aug 2 2016, 9:57 AM
graser added a comment to F896: poss1_a.png.

Rotated using possibilty 1

Aug 2 2016, 9:57 AM
graser added a comment to T13098: Measurement Tools produces 2 points on mouseclick.

it's annoying, it's a bug.

Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added a comment to T13097: Measurement Bugs on MAC.

Also, after finishing a Line Path or Polyong, the FIRST set point is deleted again.

Aug 2 2016, 9:57 AM · MITK (2012-12), Bugzilla
graser added projects to T13098: Measurement Tools produces 2 points on mouseclick: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · Bugzilla, MITK
graser added projects to T13097: Measurement Bugs on MAC: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · MITK (2012-12), Bugzilla
graser added a comment to T13080: Switching Segmentation between 2 images not always working.

[a5153c]: Merge branch 'bug-13080-segmentationReinit'

Merged commits:

2012-09-12 15:03:07 Bastian Graser [0c60a6]
Added a Reinit Call to the selected datanode to fix segmentation problem

Aug 2 2016, 9:57 AM · MITK (2016-11), Bugzilla
graser added a comment to T13080: Switching Segmentation between 2 images not always working.

The implemented solution (reinit the selected node) is not such a great solution. Maybe the user wants to see several images while performing segemntation.

Aug 2 2016, 9:57 AM · MITK (2016-11), Bugzilla
graser added projects to T13080: Switching Segmentation between 2 images not always working: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · MITK (2016-11), Bugzilla
graser added a comment to T13080: Switching Segmentation between 2 images not always working.

Tge problem was a missing reinit of the selected datanode. This has been added now.

Aug 2 2016, 9:57 AM · MITK (2016-11), Bugzilla
graser added a comment to T13033: Otsu Segmentation Help button useless.

Maybe enabling busyCursor "BusyCursorOn()" would help to indicate to the user that otsu is still calculating (when e.g. choosing 10 thresholds)

Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added projects to T13033: Otsu Segmentation Help button useless: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added projects to T13028: Accept Button should be disabled in some cases: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added projects to T13022: Preview Contour might be in wrong plane: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · MITK (2016-11), Bugzilla
graser added a comment to T13016: 3D Interpolation preview still there after switch to 2D interpolation.

There was a missing if statement in "EnableInterpolation" method

Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added a comment to T13016: 3D Interpolation preview still there after switch to 2D interpolation.

[18b651]: Merge branch 'bug-13016-3dinterpolationvisible'

Merged commits:

2012-09-12 16:04:08 Bastian Graser [c1ccb2]
fixed visibility changes when radio button clicked

Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added projects to T13014: CTRL + Add or Substract might cause critical error message in Segmentation: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added projects to T13016: 3D Interpolation preview still there after switch to 2D interpolation: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added projects to T13015: MITK Crashes when moving mouse over 3D window with Paint Tool enabled: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added a comment to T13015: MITK Crashes when moving mouse over 3D window with Paint Tool enabled.

Only on 32 BIT

Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added projects to T13005: After first start: MBI Logo ugly and plugin window too big: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added projects to T13011: Paint Tool with 3D Interpolation causes crashes: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · MITK (2016-11), Bugzilla
graser added projects to T13004: Disclaimer in the installer has strange line breaks: MITK, Bugzilla.
Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added a comment to T13004: Disclaimer in the installer has strange line breaks.

yes

Aug 2 2016, 9:57 AM · MITK (2012-09), Bugzilla
graser added a comment to T12953: 3D+T 4D nrrd image writing creates strange values.

[931490]: Merge branch 'bug-12953-writing4Dimages'

Merged commits:

2014-03-05 16:11:49 Bastian Graser [f14ec8]
Added a 4th component to spacing, origin and direction matrix to support 4D images correctly

Aug 2 2016, 9:56 AM · Bugzilla, MITK
graser added a comment to T12953: 3D+T 4D nrrd image writing creates strange values.

Fixed it.

Aug 2 2016, 9:56 AM · Bugzilla, MITK
graser added a comment to T12952: Add IGT tutorial step for IGTTrackingLab.

New remote branch pushed: bug-12952-TutorialIGTTrackingLabBasedOnNewMaster

Aug 2 2016, 9:56 AM · Bugzilla, MITK
graser added a comment to T12953: 3D+T 4D nrrd image writing creates strange values.

this needs to be fixed

Aug 2 2016, 9:56 AM · Bugzilla, MITK
graser added projects to T12953: 3D+T 4D nrrd image writing creates strange values: MITK, Bugzilla.
Aug 2 2016, 9:56 AM · Bugzilla, MITK
graser added a comment to T12946: Add "Closed Contour" Property to PointSet.

[7f5326]: Merge branch 'bug-12946-closedcontour'

Merged commits:

2012-08-29 15:25:34 Bastian Graser [ee2f41]
Also adjusted 2D Mapper to make closed contour

Aug 2 2016, 9:56 AM · Bugzilla, MITK
graser added projects to T12946: Add "Closed Contour" Property to PointSet: MITK, Bugzilla.
Aug 2 2016, 9:56 AM · Bugzilla, MITK
graser added a comment to T12946: Add "Closed Contour" Property to PointSet.

[3546fd]: Merge branch 'bug-12946-closedcontour'

Merged commits:

2012-08-31 15:11:26 Bastian Graser [bbdc06]
COMP got rid of a warning

Aug 2 2016, 9:56 AM · Bugzilla, MITK
graser added a comment to T12946: Add "Closed Contour" Property to PointSet.

There is already a property called "close contour" for pointsets. But it is not read and used correctly in the mapper. This is now repaired!

Aug 2 2016, 9:56 AM · Bugzilla, MITK