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User Details
- User Since
- Nov 19 2020, 10:58 PM (228 w, 6 d)
Sep 11 2024
Sep 11 2024
Time out was added and documentation was updated.
a178n added a revision to T30506: [Seg] Introduce time out for MONAILabel in Preferences: Unknown Object (Differential Revision).
Add time out setting for Monailabel tool
Update MONAI timeout documentation
Add time out setting for Monailabel
Aug 30 2024
Aug 30 2024
Aug 29 2024
Aug 29 2024
Aug 15 2024
Aug 15 2024
a178n added a comment to T30506: [Seg] Introduce time out for MONAILabel in Preferences.
Pushed new branch to rMITK MITK: feature/T30506-monai-update.
Jul 16 2024
Jul 16 2024
Jul 10 2024
Jul 10 2024
Jul 2 2024
Jul 2 2024
Jul 1 2024
Jul 1 2024
a178n added a comment to T30484: MITK fails to start workbench.
I tried installing MITK but I cannot replicate the error on Windows 10.
Jun 27 2024
Jun 27 2024
a178n added a comment to T30361: [Py] pyMITK package to use MITK in a python environement.
Pushed new branch to rMITK MITK: feature/T30361-pyMITK-wrapping.
Jun 26 2024
Jun 26 2024
a178n committed rMITK59ed6846f4f1: Totalsegmentator dependency fix non-version specific package listing (authored by a178n).
Totalsegmentator dependency fix non-version specific package listing
Totalsegmentator dependency fix
a178n added a parent task for T30480: Installation 'agent' for Totalsegmentator: T30479: [Seg] Totalseg and SAM/MedSAM tool fails.
Jun 25 2024
Jun 25 2024
a178n added a comment to T30479: [Seg] Totalseg and SAM/MedSAM tool fails.
Numpy dependency updated for SegmentAnything & MedSAM installation in https://github.com/MIC-DKFZ/agent-sam.git
Now the both tools should work.
a178n added a revision to T30479: [Seg] Totalseg and SAM/MedSAM tool fails: Unknown Object (Differential Revision).
a178n added a comment to T30479: [Seg] Totalseg and SAM/MedSAM tool fails.
Pushed new branch to rMITK MITK: bugfix/T30479-totalseg-dependency-update.
a178n added a comment to T30479: [Seg] Totalseg and SAM/MedSAM tool fails.
As far as SAM/MedSAM is concerned, we can add numpy<2 in our agent-sam repo and fix the issue without code changes to MITK.
Perhaps we should think about creating Totalsegmentator "agents" scripts to deal with such production issues.
a178n added a comment to T30479: [Seg] Totalseg and SAM/MedSAM tool fails.
The numpy version upgrade seems disruptive. The current latest torch version 2.3.1 is incompatible with numpy v2 while running torch.from_numpy conversions
Since the numpy v2 release, Totalsegmentator repo has updated its dependency specification. See: https://github.com/wasserth/TotalSegmentator/commit/e648b08445434585511a8a7c8118e34f5309ce05
However, new a release hasn't occurred on pypi.
a178n updated the task description for T30479: [Seg] Totalseg and SAM/MedSAM tool fails.
Jun 18 2024
Jun 18 2024
a178n added a comment to T30300: Remember "Fast" checkbox setting.
Deleted branch from rMITK MITK: feature/T30300-totalseg-fastbox.
a178n added a comment to T30353: [TotalSeg] Add confirmation dialog before exiting the tool .
Deleted branch from rMITK MITK: feature/T30353-totalseg-update.
a178n added a comment to T30392: [Segmentation] Totalsegmentator & Otsu is buggy.
Deleted branch from rMITK MITK: bugfix/T30392-totalseg-nnunet-confirmbutton.
a178n added a comment to T30355: [Seg] MedSAM as new 2D Tool in MITK.
Deleted branch from rMITK MITK: feature/T30355-medsam-tool.
a178n added a comment to T30357: [MedSAM] Add user documentaiton.
Deleted branch from rMITK MITK: feature/T30357-medsam-doku.
a178n added a comment to T30231: Monailabel User documentation.
Deleted branch from rMITK MITK: feature/T30231-monailabel-doku.
a178n added a comment to T30426: [SEG] Highlight importance of level window in Segment Anything.
Deleted branch from rMITK MITK: feature/T30426-doc-updates.
a178n added a comment to T30447: [TotalSeg] Levelwindow effect.
Deleted branch from rMITK MITK: feature/T30447-totalseg-levelwindow.
a178n added a comment to T30430: [TotalSeg] Add check if python venv exists before installation.
Deleted branch from rMITK MITK: feature/T30430-python-venv-check.
a178n added a comment to T30457: Add TotalSegmentator MR image (v 2.2) support in MITK.
Deleted branch from rMITK MITK: feature/T30457-totalseg-mri.
a178n added a comment to T29295: MONAI Label App as auto-segmentation tool in MITK.
Deleted branch from rMITK MITK: feature/T29295-monai-tool-httplib.
Jun 11 2024
Jun 11 2024
a178n closed T30457: Add TotalSegmentator MR image (v 2.2) support in MITK, a subtask of T29437: [SEG] Add TotalSegmentator, as Resolved.
Jun 10 2024
Jun 10 2024
Add pip package version check
Totalsegmentator MRI support changes
Totalsegmentator MRI support
Jun 7 2024
Jun 7 2024
MonaiLabel documentation draft
MONAI Label doku update
Monai documentation update
Add monai tool screenshot
MonaiLabel documentation
a178n committed rMITK2da4bb51d30f: Merge branch 'develop' into feature/T30231-monailabel-doku (authored by a178n).
Merge branch 'develop' into feature/T30231-monailabel-doku
Update monailabel text
Add test cases for httplib
a178n committed rMITK63fd23d68307: Merge remote-tracking branch 'origin/feature/T29421-httplib' into… (authored by a178n).
Merge remote-tracking branch 'origin/feature/T29421-httplib' into…
Add test cases for httplib
Monai Label tool changes
Code refactoring changes
a178n committed rMITKf238b3786309: Merge branch 'feature/T29421-httplib' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'feature/T29421-httplib' into feature/T29295-monai-tool-httplib
changes backup
MonaiLabel prototype stable code update
Stability and code refactoring changes
a178n committed rMITKe5770ec5c5ea: Merge branch 'develop' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'develop' into feature/T29295-monai-tool-httplib
a178n committed rMITK2690e590a9c1: Adding confirm message for data send to server (authored by a178n).
Adding confirm message for data send to server
a178n committed rMITK9c7b4b93a42a: Monailabel: segmentation api adapting changes (authored by a178n).
Monailabel: segmentation api adapting changes
a178n committed rMITK5978c7bac618: Label mapping to preview and other refactoring (authored by a178n).
Label mapping to preview and other refactoring
Adapting to monai label mismatch issue
a178n committed rMITK1f0bca279988: Merge branch 'develop' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'develop' into feature/T29295-monai-tool-httplib
a178n committed rMITK3165e6b3637a: MonaiLabel as 2 tools for 2D and 3D segmentation (authored by a178n).
MonaiLabel as 2 tools for 2D and 3D segmentation
MonaiLabel UI and other code changes
Monai Tool: Click interactions UI changes
a178n committed rMITKe2ba5546783a: Monailabel tool UI& backend update for interactive model support (authored by a178n).
Monailabel tool UI& backend update for interactive model support
a178n committed rMITKd6c3873bd3a3: Adding mitk message to Monai tool for UI update (authored by a178n).
Adding mitk message to Monai tool for UI update
Monailabel tool code updates
MonaiLabel tool updates for 2D tools
a178n committed rMITKf85360194bc4: Monailabel UI: Supported labels will be shown as text instead of a combobox (authored by a178n).
Monailabel UI: Supported labels will be shown as text instead of a combobox
a178n committed rMITK18c19e02b417: Merge branch 'develop' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'develop' into feature/T29295-monai-tool-httplib
a178n committed rMITK4517d610e437: MONAILabel code update for click-based models (authored by a178n).
MONAILabel code update for click-based models
a178n committed rMITK23d7a190af06: Merge branch 'develop' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'develop' into feature/T29295-monai-tool-httplib
MonaiLabel code refactoring changes
MonaiLabel code refactoring updates
gcc compiler compliant changes
Minor code update for gcc compliance
MonaiLabel minor UI changes
Remove Httplib REST Client test file
a178n committed rMITK8c4159b6eb4c: Adding new variable in Preference for MONAI Label for extending support to… (authored by a178n).
Adding new variable in Preference for MONAI Label for extending support to…
Minor code refactoring changes
Turn httplib to ON
MONAILabel add SSL support
a178n committed rMITK6a37a7d14c5d: Merge branch 'develop' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'develop' into feature/T29295-monai-tool-httplib
Monailabel code refactoring changes
a178n committed rMITK1b808a345a7e: Merge branch 'develop' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'develop' into feature/T29295-monai-tool-httplib
a178n committed rMITK8d0da135b085: Merge branch 'develop' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'develop' into feature/T29295-monai-tool-httplib
a178n committed rMITKe41c485648ad: Merge branch 'develop' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'develop' into feature/T29295-monai-tool-httplib
a178n committed rMITKce98ea7c72c5: Merge branch 'develop' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'develop' into feature/T29295-monai-tool-httplib
a178n committed rMITK6cffd2789c83: Update httplib version and other code refactoring changes (authored by a178n).
Update httplib version and other code refactoring changes
Code improvement changes
a178n committed rMITK2292d320697c: Merge branch 'develop' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'develop' into feature/T29295-monai-tool-httplib
Code refactoring changes
Levelwindow changes are applied to image
a178n committed rMITKa6839a1a264a: Merge branch 'develop' into feature/T29295-monai-tool-httplib (authored by a178n).
Merge branch 'develop' into feature/T29295-monai-tool-httplib