Page MenuHomePhabricator
Create Task
Maniphest T28499

Refactor/rewrite RegionGrowing3D tool
Closed, ResolvedPublic
Actions

Description

The current AdaptriveRegionGrowingTool aka RegionGrowing3DTool is not working properly and its implementation is exotic (to say at least). In addition I am not sure if its behavior is realy what most people want: some of its "magic" e.g. assumes that it will be used on CT images, its interactive adaption feature ignores connectedness (e.g. leading to islands...)...

I would argue we should just offer a new 3D tool that is closer to the 2D version. We might keept the old 3D version due to legacy. (But I personaly would deprecate and finaly remove it.)

Related Objects
Search...

Event Timeline

floca triaged this task as High priority.May 24 2021, 10:37 AM
floca created this task.
floca added subtasks: T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep, T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox, T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction.
floca added subtasks: T27437: Migrate MITK to use ITK 5.x , T28523: Evaluate MITK segmentation survey.Jun 4 2021, 7:08 PM
floca added a subtask: T28524: Refactor LabelSetImage and associated classes..
floca moved this task from Backlog to Cycle on the MITK (v2021.10) board.Jun 4 2021, 7:14 PM
floca moved this task from Cycle to Segmentation on the MITK (v2021.10) board.Jun 6 2021, 8:27 PM
floca moved this task from Segmentation to Cycle on the MITK (v2021.10) board.
a178n closed subtask T28523: Evaluate MITK segmentation survey as Resolved.Jul 28 2021, 1:22 PM
kislinsk mentioned this in T28756: [Segmentation] 3-d picking tool crashes with dynamic segmentations.Oct 20 2021, 7:48 AM
kislinsk edited projects, added MITK (v2022.04); removed MITK (v2021.10).Nov 10 2021, 4:32 PM
floca moved this task from Backlog to Segmentation on the MITK (v2022.04) board.Nov 17 2021, 11:56 AM
kalali mentioned this in T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox.Feb 22 2022, 3:54 PM
kalali mentioned this in T28640: [Segmentation] Add tool checks for dynamic plugin view.Feb 22 2022, 5:10 PM
kislinsk closed subtask T27437: Migrate MITK to use ITK 5.x as Resolved.Mar 17 2022, 1:17 AM
floca edited projects, added MITK, Next Milestone; removed MITK (v2022.04).Apr 20 2022, 10:37 AM
floca edited projects, added MITK (v2022.10); removed Next Milestone, MITK.May 12 2022, 10:43 AM
floca moved this task from Backlog to Segmentation on the MITK (v2022.10) board.May 12 2022, 11:08 AM
floca closed subtask T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox as Wontfix.Jun 3 2022, 12:27 PM
floca lowered the priority of this task from High to Low.Jul 27 2022, 11:41 AM
kalali added a parent task: T29191: [SEG] New segmentation tool candidates.Aug 15 2022, 9:37 AM
kalali removed a subtask: T28524: Refactor LabelSetImage and associated classes..
kalali added a subscriber: kalali.
kalali removed a subscriber: kalali.
floca moved this task from Segmentation to Cycle on the MITK (v2022.10) board.Sep 28 2022, 10:33 AM
floca moved this task from Cycle to Segmentation on the MITK (v2022.10) board.
kislinsk edited projects, added MITK (v2023.04); removed MITK (v2022.10).Nov 23 2022, 3:52 PM
floca moved this task from Backlog to Cycle on the MITK (v2023.04) board.Nov 23 2022, 3:55 PM
floca edited projects, added MITK, Next Milestone; removed MITK (v2023.04).May 3 2023, 3:48 PM

We should discuss if we realy try to get region growing back online with all the other tools ...

kislinsk edited projects, added MITK (v2023.12); removed Next Milestone, MITK.May 17 2023, 2:57 PM
floca removed floca as the assignee of this task.Oct 27 2023, 1:11 PM
floca moved this task from Backlog to MITK Meeting on the Request for Discussion board.
kislinsk edited projects, added MITK (v2024.06); removed MITK (v2023.12).Dec 5 2023, 10:38 AM
floca removed a project: Request for Discussion.Feb 21 2024, 11:11 AM

We try to get it online agian. But it might take its time (see prio).

kislinsk edited projects, added MITK (v2024.12); removed MITK (v2024.06).Jun 17 2024, 2:33 PM
kislinsk closed this task as Resolved.Sep 16 2024, 1:49 PM
kislinsk claimed this task.
kislinsk closed subtask T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction as Resolved.
kislinsk added a project: Moved to git.dkfz.de.
kislinsk added a subscriber: kislinsk.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

kislinsk closed subtask T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep as Resolved.Sep 16 2024, 1:49 PM
MITK · MIC · IMSY · DKFZ