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Maniphest T28275

[Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep
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Description

Load 4D image
Go to region growing 3D
Add point
Run segmentation
Change timestep
Run segmentation again

--> Error message

pointset.PNG (1×2 px, 176 KB)

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Event Timeline

• thomass triaged this task as High priority.Feb 4 2021, 2:48 PM
• thomass created this task.
• thomass added a parent task: T28000: MITK v2021.02.

Probably it would just help to replace the MITK Error by a warning? This is also done when there is no point set at all.

floca added a subscriber: floca.Feb 4 2021, 8:00 PM

Oh fudge.... I totally have overlooked the tool. 😱

floca claimed this task.Feb 4 2021, 8:01 PM
floca edited projects, added MITK, Next Milestone; removed MITK (v2021.02).Feb 4 2021, 10:33 PM

The tool is a mess. Overhaul for this is not realistic. I deactivate the tool for dynamic images as a quick fix. I will reactivate it after rework.

floca renamed this task from [Segmentation] 4D Segmentation returns error message when point is not on the correct timestep to [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep.Feb 4 2021, 10:34 PM
floca removed a parent task: T28000: MITK v2021.02.
kislinsk mentioned this in rMITK3c263d7d6a5e: Release quickfix for T28275.Feb 10 2021, 5:49 PM
floca edited projects, added MITK (v2021.10); removed Next Milestone, MITK.Apr 7 2021, 10:55 AM
floca added a parent task: T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox.Apr 7 2021, 9:37 PM
floca moved this task from Backlog to Segmentation on the MITK (v2021.10) board.Apr 7 2021, 9:42 PM
floca moved this task from Segmentation to Cycle on the MITK (v2021.10) board.
floca mentioned this in T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox.May 5 2021, 8:42 PM
kalali mentioned this in T28479: [Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms.May 6 2021, 10:48 AM
floca added a parent task: T28499: Refactor/rewrite RegionGrowing3D tool.May 24 2021, 10:38 AM
floca added subtasks: T28523: Evaluate MITK segmentation survey, T28524: Refactor LabelSetImage and associated classes., T27437: Migrate MITK to use ITK 5.x .Jun 4 2021, 7:09 PM
floca moved this task from Cycle to Segmentation on the MITK (v2021.10) board.Jun 6 2021, 8:27 PM
floca moved this task from Segmentation to Cycle on the MITK (v2021.10) board.
a178n closed subtask T28523: Evaluate MITK segmentation survey as Resolved.Jul 28 2021, 1:22 PM
kislinsk edited projects, added MITK (v2022.04); removed MITK (v2021.10).Nov 10 2021, 4:32 PM
floca moved this task from Backlog to Segmentation on the MITK (v2022.04) board.Nov 17 2021, 11:56 AM
floca edited projects, added MITK, Next Milestone; removed MITK (v2022.04).Jan 20 2022, 10:32 AM
kalali mentioned this in T28640: [Segmentation] Add tool checks for dynamic plugin view.Feb 22 2022, 5:10 PM
kalali mentioned this in T28989: [Segmentation] CanHandle functions seem to be inconsistent.Feb 22 2022, 6:01 PM
kislinsk closed subtask T27437: Migrate MITK to use ITK 5.x as Resolved.Mar 17 2022, 1:17 AM
floca edited projects, added MITK (v2022.10); removed Next Milestone, MITK.May 12 2022, 11:01 AM
floca moved this task from Backlog to Segmentation on the MITK (v2022.10) board.May 12 2022, 11:08 AM
floca lowered the priority of this task from High to Low.Jul 27 2022, 11:41 AM
kalali removed a subtask: T28524: Refactor LabelSetImage and associated classes..Aug 15 2022, 9:39 AM
kalali removed a subtask: T28523: Evaluate MITK segmentation survey.
kalali removed a subtask: T27437: Migrate MITK to use ITK 5.x .
kalali removed a parent task: T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox.Aug 15 2022, 9:41 AM
floca moved this task from Segmentation to Cycle on the MITK (v2022.10) board.Sep 28 2022, 10:33 AM
floca moved this task from Cycle to Segmentation on the MITK (v2022.10) board.
kislinsk edited projects, added MITK (v2023.04); removed MITK (v2022.10).Nov 23 2022, 3:52 PM
floca moved this task from Backlog to Cycle on the MITK (v2023.04) board.Nov 23 2022, 3:55 PM
floca edited projects, added MITK, Next Milestone, Request for Discussion; removed MITK (v2023.04).May 3 2023, 3:51 PM

We should discuss if it is still worth it to get it back online after all this time and with the new tools.

kislinsk edited projects, added MITK (v2023.12); removed Next Milestone, MITK.May 17 2023, 2:57 PM
floca removed floca as the assignee of this task.Oct 27 2023, 1:11 PM
floca moved this task from Backlog to MITK Meeting on the Request for Discussion board.
kislinsk edited projects, added MITK (v2024.06); removed MITK (v2023.12).Dec 5 2023, 10:38 AM
floca removed a project: Request for Discussion.Feb 21 2024, 11:11 AM

We try to get it online agian. But it might take its time (see prio).

kislinsk edited projects, added MITK (v2024.12); removed MITK (v2024.06).Jun 17 2024, 2:33 PM
kislinsk closed this task as Resolved.Mon, Sep 16, 1:49 PM
kislinsk claimed this task.
kislinsk added a project: Moved to git.dkfz.de.
kislinsk added a subscriber: kislinsk.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

MITK · MIC · IMSY · DKFZ