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Oct 28 2022

kislinsk closed T29324: Create view for pixel information as Resolved.
Oct 28 2022, 5:14 PM · MITK
kislinsk closed T29324: Create view for pixel information, a subtask of T25042: How to handle update informations in heterogeneous time geometries and out of bound situations , as Resolved.
Oct 28 2022, 5:14 PM · MITK
kislinsk added a revision to T29324: Create view for pixel information: Unknown Object (Differential Revision).
Oct 28 2022, 5:14 PM · MITK
r948e committed rMITKDIFFa6651fe7bb42: Reset Classifier available (authored by r948e).
Reset Classifier available
Oct 28 2022, 11:34 AM
r948e committed rMITKDIFFfeb91be0104a: Update QmitkInteractiveFiberDissectionView.cpp (authored by r948e).
Update QmitkInteractiveFiberDissectionView.cpp
Oct 28 2022, 11:34 AM
kislinsk closed T29348: Improve Welcome page with basic navigation hints as Resolved.
Oct 28 2022, 10:08 AM · Cleared, Checklist, MITK (v2022.10)
kislinsk added a comment to T29377: 2022 Week 43 (Late October).

Pushed new branch to rMITK MITK: release/T29377-2022-Week-43.

Oct 28 2022, 10:07 AM · MITK
kislinsk triaged T29377: 2022 Week 43 (Late October) as Normal priority.
Oct 28 2022, 10:05 AM · MITK
kislinsk created an object: 2022 Week 43 (Late October).
Oct 28 2022, 10:04 AM
kislinsk closed T29376: Make Welcome page tips optional as Resolved.
Oct 28 2022, 7:10 AM · MITK (v2022.10)
kislinsk added a comment to T29376: Make Welcome page tips optional.

Deleted branch from rMITK MITK: feature/T29376-MakeTipsOptional.

Oct 28 2022, 7:10 AM · MITK (v2022.10)
kislinsk committed rMITK695e7f53efaf: Make tips on Welcome page optional (authored by kislinsk).
Make tips on Welcome page optional
Oct 28 2022, 7:10 AM
kislinsk committed rMITK9c1457d91a01: Merge branch 'feature/T29376-MakeTipsOptional' into develop (authored by kislinsk).
Merge branch 'feature/T29376-MakeTipsOptional' into develop
Oct 28 2022, 7:10 AM
kislinsk added a comment to T29376: Make Welcome page tips optional.

Pushed new branch to rMITK MITK: feature/T29376-MakeTipsOptional.

Oct 28 2022, 7:09 AM · MITK (v2022.10)
kislinsk triaged T29376: Make Welcome page tips optional as Wishlist priority.
Oct 28 2022, 7:06 AM · MITK (v2022.10)

Oct 27 2022

kislinsk added a comment to T29348: Improve Welcome page with basic navigation hints.

Deleted branch from rMITK MITK: bugfix/T29348-ImproveWelcomePage.

Oct 27 2022, 5:02 PM · Cleared, Checklist, MITK (v2022.10)
kislinsk committed rMITK6e68c1f65685: Improve welcome page (authored by kislinsk).
Improve welcome page
Oct 27 2022, 5:02 PM
kislinsk committed rMITK39d5edc83f86: Use a more adequate initial workbench window size (authored by kislinsk).
Use a more adequate initial workbench window size
Oct 27 2022, 5:02 PM
kislinsk committed rMITKc87e591be515: Center initial window to screen (authored by kislinsk).
Center initial window to screen
Oct 27 2022, 5:02 PM
kislinsk committed rMITKc63bb7780cb9: Adapt perspective ratios to 16:9 workbench windows (authored by kislinsk).
Adapt perspective ratios to 16:9 workbench windows
Oct 27 2022, 5:02 PM
kislinsk committed rMITK25d4cb1701f1: Show views before perspectives (authored by kislinsk).
Show views before perspectives
Oct 27 2022, 5:02 PM
kislinsk committed rMITK148ea641aed9: Merge branch 'bugfix/T29348-ImproveWelcomePage' into develop (authored by kislinsk).
Merge branch 'bugfix/T29348-ImproveWelcomePage' into develop
Oct 27 2022, 5:02 PM
r948e committed rMITKDIFFbc1a87cf3cf2: Update mitkStreamlineInteractorBrush.cpp, mitkStreamlineInteractorBrush.h, and… (authored by r948e).
Update mitkStreamlineInteractorBrush.cpp, mitkStreamlineInteractorBrush.h, and…
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFFd4c73b2e2144: Update files.cmake (authored by r948e).
Update files.cmake
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFFb0891f25d5bd: Update mitkStreamlineFeatureExtractor.cpp, files.cmake, and 4 more files... (authored by r948e).
Update mitkStreamlineFeatureExtractor.cpp, files.cmake, and 4 more files...
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFFf3e51c216f09: Update files.cmake.autosave (authored by r948e).
Update files.cmake.autosave
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFFbbb4486e0583: Update mitkStreamlineFeatureExtractor.cpp, QmitkInteractiveFiberDissectionView. (authored by r948e).
Update mitkStreamlineFeatureExtractor.cpp, QmitkInteractiveFiberDissectionView.
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF2e2db28505ef: Remove Certain negative data from Testdata (authored by r948e).
Remove Certain negative data from Testdata
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF775b9a42e573: Update .gitignore, mitkStreamlineInteractor.cpp, and 2 more files... (authored by r948e).
Update .gitignore, mitkStreamlineInteractor.cpp, and 2 more files...
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFFa50f5b22422d: adding visualisatzion of most certain data (authored by r948e).
adding visualisatzion of most certain data
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF62174a30077d: Bug fixed regarding Prototypes (authored by r948e).
Bug fixed regarding Prototypes
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF112c3be2fdf4: Shuffle, when Resampling a Streamline. Validation added (authored by r948e).
Shuffle, when Resampling a Streamline. Validation added
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF91ea93a66d66: Experiments with fixed number of Prototypes (authored by r948e).
Experiments with fixed number of Prototypes
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF6e693281a462: Update mitkFiberBundle.cpp, mitkStreamlineInteractor.cpp, and 6 more files... (authored by r948e).
Update mitkFiberBundle.cpp, mitkStreamlineInteractor.cpp, and 6 more files...
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF9f5a37fa60f9: Update mitkFiberBundle.cpp, mitkFiberBundle.h, and mitkStreamlineInteractor.cpp (authored by r948e).
Update mitkFiberBundle.cpp, mitkFiberBundle.h, and mitkStreamlineInteractor.cpp
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF5abf02440225: FFT for in uncertainty range implemented (authored by r948e).
FFT for in uncertainty range implemented
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF71874f0be51d: Update mitkFiberBundle.cpp, mitkFiberBundle.h, and 8 more files... (authored by r948e).
Update mitkFiberBundle.cpp, mitkFiberBundle.h, and 8 more files...
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFFebef68e2a72d: SFF Prototype selection implemented (authored by r948e).
SFF Prototype selection implemented
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF2cde7f104461: Update mitkStreamlineFeatureExtractor.cpp, mitkStreamlineFeatureExtractor.h… (authored by r948e).
Update mitkStreamlineFeatureExtractor.cpp, mitkStreamlineFeatureExtractor.h…
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF6ad0c3eb8fe3: 2D picking implemented (authored by r948e).
2D picking implemented
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF74587a3d5e86: Interacotor: Unlabel data (authored by r948e).
Interacotor: Unlabel data
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF0d6ad15fa6ec: Change number of Resampling points to 40 (authored by r948e).
Change number of Resampling points to 40
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF38a557e9d7d3: Classifier runs (authored by r948e).
Classifier runs
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFFff51e0d66704: Random Forest implemented with uncertainty labeling... (authored by r948e).
Random Forest implemented with uncertainty labeling...
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF6dbab87b62ab: Features are now saved, which reduces computing time. (authored by r948e).
Features are now saved, which reduces computing time.
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF723eae6bfd5d: Creation of uncertainty labes done (authored by r948e).
Creation of uncertainty labes done
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF6f4ab316a2e3: Back up. Random Forest makes Prediction, but its bad (authored by r948e).
Back up. Random Forest makes Prediction, but its bad
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFFd4d3e379429c: First iteration of cycle implemented. Prediction is done on both training and… (authored by r948e).
First iteration of cycle implemented. Prediction is done on both training and…
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF35d9069c6e1c: Init of calculation D_mdf which is now possible between (hardcoded) Prototypes… (authored by r948e).
Init of calculation D_mdf which is now possible between (hardcoded) Prototypes…
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFF175522efd683: Ready for Prediction, but test array is to big. Need to change type op cv::Mat (authored by r948e).
Ready for Prediction, but test array is to big. Need to change type op cv::Mat
Oct 27 2022, 2:18 PM
r948e committed rMITKDIFFc3120574450b: Bug Fix (authored by r948e).
Bug Fix
Oct 27 2022, 2:17 PM
r948e committed rMITKDIFF7ee5918e19e0: Init of StreamlineInteractor (authored by r948e).
Init of StreamlineInteractor
Oct 27 2022, 2:17 PM
r948e committed rMITKDIFFd4b60269bf5e: Merge branch 'CreateModule' into InteractiveFiberDissection (authored by r948e).
Merge branch 'CreateModule' into InteractiveFiberDissection
Oct 27 2022, 2:17 PM
r948e committed rMITKDIFF6e131d3efdd8: Changes in cmake (authored by r948e).
Changes in cmake
Oct 27 2022, 2:17 PM
r948e committed rMITKDIFF0bb2d2222186: First steps for new Module (authored by r948e).
First steps for new Module
Oct 27 2022, 2:17 PM
r948e committed rMITKDIFFdea51d7c95d5: Init of DataInteractor for StreamlineLabel and FeatureExtractor (authored by r948e).
Init of DataInteractor for StreamlineLabel and FeatureExtractor
Oct 27 2022, 2:17 PM
r948e committed rMITKDIFFf933f75770e3: Init of Interactive FiberDissection (authored by r948e).
Init of Interactive FiberDissection
Oct 27 2022, 2:17 PM
r948e committed rMITKDIFFbb4c7d79a112: Tidy up IFDview (authored by r948e).
Tidy up IFDview
Oct 27 2022, 2:17 PM
r948e added a project to T29356: Infibtion: MITK Diffusion.
Oct 27 2022, 2:17 PM · MITK Diffusion
kislinsk added a comment to T29348: Improve Welcome page with basic navigation hints.

Pushed new branch to rMITK MITK: bugfix/T29348-ImproveWelcomePage.

Oct 27 2022, 12:43 AM · Cleared, Checklist, MITK (v2022.10)

Oct 26 2022

kislinsk renamed T29375: Cursor offset in 2D tools with Qt 5.15 on macOS from [Segmentation] Cursor offset in 2D tools with Qt 5.12 on macOS to Cursor offset in 2D tools with Qt 5.12 on macOS.
Oct 26 2022, 6:28 PM · MITK (v2023.04)
kislinsk triaged T29375: Cursor offset in 2D tools with Qt 5.15 on macOS as Normal priority.

This bug is originating in Qt 5.15. It is reproducible but not really related to something in segmentation. It's just an obvious part of MITK to encounter the offset.

Oct 26 2022, 6:27 PM · MITK (v2023.04)
kislinsk renamed T29375: Cursor offset in 2D tools with Qt 5.15 on macOS from [Segmentation] Cursor offset in 2D tools to [Segmentation] Cursor offset in 2D tools with Qt 5.12 on macOS.
Oct 26 2022, 6:26 PM · MITK (v2023.04)
a178n added a comment to T29375: Cursor offset in 2D tools with Qt 5.15 on macOS.

Ya, I tried. Both before and after annotation. Changes nothing. Bug exists.

Oct 26 2022, 3:02 PM · MITK (v2023.04)
kalali added a comment to T29375: Cursor offset in 2D tools with Qt 5.15 on macOS.

Could you explicitly "reinit" the reference node and see if that changes anything?

Oct 26 2022, 2:58 PM · MITK (v2023.04)
a178n updated the task description for T29375: Cursor offset in 2D tools with Qt 5.15 on macOS.
Oct 26 2022, 2:56 PM · MITK (v2023.04)
a178n added a comment to T29375: Cursor offset in 2D tools with Qt 5.15 on macOS.

Bug likely to be caused by Qt 5.15 in my local.
This may not affect this release build since official release builds use Qt 5.12.

Oct 26 2022, 2:55 PM · MITK (v2023.04)
a178n created T29375: Cursor offset in 2D tools with Qt 5.15 on macOS.
Oct 26 2022, 2:52 PM · MITK (v2023.04)
floca moved T29204: [SEG] Rework properties of Label class + add instance information from Backlog to MITK Meeting on the Request for Discussion board.
Oct 26 2022, 2:45 PM · MITK (v2024.06), Breaking Change
floca added a project to T29204: [SEG] Rework properties of Label class + add instance information: Request for Discussion.
Oct 26 2022, 2:45 PM · MITK (v2024.06), Breaking Change
floca closed T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images as Resolved.

Reworked the tools to make them faster.
Close ticket for now. If It is not fast enough we need to make more rework and need to make a in depth profiling where we loose the time.

Oct 26 2022, 2:42 PM · Request for Discussion, MITK (v2022.10), Checklist
floca closed T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images, a subtask of T28479: [Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms, as Resolved.
Oct 26 2022, 2:42 PM · MITK (v2024.06)
kalali committed rMITKacd85df8ff0d: Remove new reinit overlay for StdMultiWidget (authored by kalali).
Remove new reinit overlay for StdMultiWidget
Oct 26 2022, 2:23 PM
kalali committed rMITK06ed0391f50c: Remove unnecessary function overriding (authored by kalali).
Remove unnecessary function overriding
Oct 26 2022, 2:23 PM
kalali committed rMITK5c26d8bfc5e3: Remove automatic state definition (authored by kalali).
Remove automatic state definition
Oct 26 2022, 2:23 PM
kalali committed rMITKd7a2545323de: Add geometry comparison if coupled render windows are found (authored by kalali).
Add geometry comparison if coupled render windows are found
Oct 26 2022, 2:23 PM
kalali committed rMITK2fb5f239bbfa: Add virtual function for subclass (authored by kalali).
Add virtual function for subclass
Oct 26 2022, 2:23 PM
kalali committed rMITK30b5bc42bc6c: React only if coupled render windows are found (authored by kalali).
React only if coupled render windows are found
Oct 26 2022, 2:23 PM
kalali committed rMITKf0c2ee26ca76: Provide function to check for coupled render windows (authored by kalali).
Provide function to check for coupled render windows
Oct 26 2022, 2:23 PM
floca committed rMITK9a5899b46119: T29359 - Fixed inversion feature. Now wipe and paint pixels are indicated at… (authored by floca).
T29359 - Fixed inversion feature. Now wipe and paint pixels are indicated at…
Oct 26 2022, 2:20 PM
floca committed rMITK76ee999edb82: Fixed wrong active label queries (authored by floca).
Fixed wrong active label queries
Oct 26 2022, 2:19 PM
floca committed rMITK6ef88d304a8c: Fixed Undo/Redo behavior of paintbrush tools (authored by floca).
Fixed Undo/Redo behavior of paintbrush tools
Oct 26 2022, 2:19 PM
floca closed T29359: Segmentation Free Testing Checklist - Paint and Wipe Tool are buggy when Cntrl is pressed. as Resolved by committing rMITKa7abbf5b15a0: Fixed inversion feature. Visual representation is correctly showing the mode….
Oct 26 2022, 2:19 PM · Checklist, MITK (v2022.10)
floca committed rMITKa7abbf5b15a0: Fixed inversion feature. Visual representation is correctly showing the mode… (authored by floca).
Fixed inversion feature. Visual representation is correctly showing the mode…
Oct 26 2022, 2:19 PM
floca updated the task description for T29374: [SEG] Instant visual response to inverted state of tools (add, substract, paint, wipe).
Oct 26 2022, 10:37 AM · MITK (v2024.06)
kislinsk assigned T29367: [Segmentation] New render window specific reinit warning is confusing to kalali.
Oct 26 2022, 10:29 AM · MITK (v2022.10)
floca triaged T29374: [SEG] Instant visual response to inverted state of tools (add, substract, paint, wipe) as Normal priority.
Oct 26 2022, 9:22 AM · MITK (v2024.06)

Oct 25 2022

kislinsk closed T29372: Optionally skip finished segmentation tasks as Resolved.

I implemented the feature based on the shift key:

  • Press Shift while clicking on the Previous/Next Task buttons to skip finished tasks
  • Use Control + Shift + P/N shortcuts instead of Control + Alt + P/N shortcuts for the same behavior
Oct 25 2022, 10:09 PM · MITK (v2022.10)
kislinsk closed T29372: Optionally skip finished segmentation tasks, a subtask of T29157: NCT ISSO Annotation Support with MITK Segmentation Flow, as Resolved.
Oct 25 2022, 10:09 PM · MITK (v2024.06)
kislinsk added a comment to T29372: Optionally skip finished segmentation tasks.

Deleted branch from rMITK MITK: feature/T29372-OptionallySkipDoneTasks.

Oct 25 2022, 10:06 PM · MITK (v2022.10)
kislinsk committed rMITKd4d9aaacae87: Optionally skip done tasks (authored by kislinsk).
Optionally skip done tasks
Oct 25 2022, 10:06 PM
kislinsk committed rMITK26d4374a3e3a: Merge branch 'feature/T29372-OptionallySkipDoneTasks' into develop (authored by kislinsk).
Merge branch 'feature/T29372-OptionallySkipDoneTasks' into develop
Oct 25 2022, 10:06 PM
kislinsk added a comment to T29372: Optionally skip finished segmentation tasks.

Pushed new branch to rMITK MITK: feature/T29372-OptionallySkipDoneTasks.

Oct 25 2022, 10:05 PM · MITK (v2022.10)
floca added a comment to T29367: [Segmentation] New render window specific reinit warning is confusing.

There are valid points. We should not confuse the user.
Correctly done, I think the new overlay style is the way to go. Besides optimized/userfriendly text (+making the overlay blocky), we could also directly add icon and btns at the overlay to allow reinit of the render window or all render windows. I think from a UX perspective it would be a huge improvment compared to all other versions.

Oct 25 2022, 6:43 PM · MITK (v2022.10)
kislinsk added a comment to T29371: [Registration] Improve view icons.

Hm, I disagree. :-)

Oct 25 2022, 5:24 PM · MITK
kislinsk closed T29373: Improve standard display icon as Resolved.
Oct 25 2022, 5:08 PM · MITK (v2022.10)
kislinsk added a comment to T29373: Improve standard display icon.

Deleted branch from rMITK MITK: bugfix/T29373-ThemeStdDisplayIcon.

Oct 25 2022, 5:08 PM · MITK (v2022.10)
kislinsk committed rMITK8ffdbb5645e5: Improve standard display icon (authored by kislinsk).
Improve standard display icon
Oct 25 2022, 5:08 PM
kislinsk committed rMITK9fe142c94d2b: Improve all standard display icons (authored by kislinsk).
Improve all standard display icons
Oct 25 2022, 5:08 PM
kislinsk committed rMITK1c3ba71e96b0: Merge branch 'bugfix/T29373-ThemeStdDisplayIcon' into develop (authored by kislinsk).
Merge branch 'bugfix/T29373-ThemeStdDisplayIcon' into develop
Oct 25 2022, 5:08 PM
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