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[Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms
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Description

We need to rethink / refactor our (multi label) segmentation tools / algorithms in order to fix them / optimize with respect to the following properties:

  • usability of the tools
  • efficient resource utilization of the algorithms
  • correctness of the implementation (bugs)

At first we need to find out which of the current tools are used / problematic. For this we will open a survey to ask the MITK community.
The outcome might be that we need to refactor or remove some of the existing tools and add new, modern sophisticated segmentation algorithms.

This issue is already known and widely discussed; some related tasks are:

In general the Segmentation module / plugin and the MultiLabel Segmentation module / plugin need to be overhauled, which will be done here T28176: [Segmentation] Inspection of module and plugin and here T27807: [MultiLabel Segmentation] Inspection of module and plugin.

Resolving the redundancy between Segmentation view and MultiLabel Segmentation view should be done first. T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.
Everything else (like T28176 or T27807) should be reevaluated after the redundancy (in views and code base) is resolved (e.g. could be that some issues are obsolete then, or that new will be found, but at least maintanance will then be easier as we have then a single source of truth.)

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Event Timeline

kalali triaged this task as High priority.May 6 2021, 10:48 AM
kalali created this task.

Also see our internal discussion about who to address several more fundamental design issues: https://hub.dkfz.de/f/5459842

floca lowered the priority of this task from High to Normal.May 12 2022, 10:49 AM
floca edited projects, added MITK (v2022.10); removed MITK, Next Milestone.