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Jul 11 2022

kislinsk committed rMITK68346568dc60: Merge branch 'feature/T29228-MITKExtensionDoc' into develop (authored by kislinsk).
Merge branch 'feature/T29228-MITKExtensionDoc' into develop
Jul 11 2022, 11:24 PM
kislinsk added a comment to T29228: Parse MITK extensions when generating documentation.

Pushed new branch to rMITK MITK: feature/T29228-MITKExtensionDoc.

Jul 11 2022, 11:22 PM · MITK (v2022.10)
kislinsk triaged T29228: Parse MITK extensions when generating documentation as Wishlist priority.
Jul 11 2022, 11:16 PM · MITK (v2022.10)
kislinsk closed T27024: Fix PhotoacousticsLib mitkSpectralUnmixingTest and mitkPhotoacousticVolumeTest as Resolved.
Jul 11 2022, 11:12 PM · MITK
kislinsk renamed T28787: Support outlines of binary images in 3-d render windows from Support uutlines of binary images in 3-d render windows to Support outlines of binary images in 3-d render windows.
Jul 11 2022, 11:11 PM · Moved to git.dkfz.de, Request for Discussion, MITK
kislinsk closed T29226: 2022 Week 28 (Mid July) as Resolved.
Jul 11 2022, 9:23 AM · MITK
kislinsk edited the content of Changelog.
Jul 11 2022, 9:22 AM · MITK
kislinsk edited the content of 2022 Week 28 (Mid July).
Jul 11 2022, 9:21 AM
kislinsk added a comment to T29226: 2022 Week 28 (Mid July).

Deleted branch from rMITK MITK: release/T29226-2022-Week-28.

Jul 11 2022, 9:21 AM · MITK
kislinsk committed rMITKf88376c02080: Merge branch 'master' into develop (authored by kislinsk).
Merge branch 'master' into develop
Jul 11 2022, 9:20 AM
kislinsk committed rMITKc0b6f9f63514: 2022 Week 28 (Mid July) (authored by kislinsk).
2022 Week 28 (Mid July)
Jul 11 2022, 9:20 AM
kislinsk edited the content of MITK v2022.04.
Jul 11 2022, 9:10 AM
kislinsk edited the content of 2022 Week 28 (Mid July).
Jul 11 2022, 9:09 AM
kislinsk added a comment to T29226: 2022 Week 28 (Mid July).

Pushed new branch to rMITK MITK: release/T29226-2022-Week-28.

Jul 11 2022, 7:17 AM · MITK
kislinsk triaged T29226: 2022 Week 28 (Mid July) as Normal priority.
Jul 11 2022, 7:16 AM · MITK
kislinsk created an object: 2022 Week 28 (Mid July).
Jul 11 2022, 7:15 AM

Jul 8 2022

kislinsk added a revision to T29225: Rule Checker for FlowBench: Restricted Differential Revision.
Jul 8 2022, 10:19 AM · MITK
kislinsk lowered the priority of T29225: Rule Checker for FlowBench from Normal to Wishlist.
Jul 8 2022, 10:18 AM · MITK
kislinsk added a parent task for T29225: Rule Checker for FlowBench: T29157: NCT ISSO Annotation Support with MITK Segmentation Flow.
Jul 8 2022, 10:18 AM · MITK
kislinsk added a subtask for T29157: NCT ISSO Annotation Support with MITK Segmentation Flow: T29225: Rule Checker for FlowBench.
Jul 8 2022, 10:18 AM · Moved to git.dkfz.de, MITK (v2024.12)

Jun 29 2022

kislinsk removed a project from T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label : Request for Discussion.
Jun 29 2022, 11:26 AM · MITK (v2023.04)
kislinsk added a member for MITK-MBI: j762e.
Jun 29 2022, 11:22 AM
kislinsk added a revision to T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: Unknown Object (Differential Revision).
Jun 29 2022, 10:22 AM · MITK (v2023.04), Restricted Project
kislinsk added a revision to T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: Restricted Differential Revision.
Jun 29 2022, 10:21 AM · MITK (v2023.04), Restricted Project

Jun 28 2022

kislinsk added a comment to T29160: [Segmentation] Worklist specification, data structure and io functions.
Jun 28 2022, 11:40 AM · MITK (v2022.10)

Jun 27 2022

kislinsk added a comment to T29160: [Segmentation] Worklist specification, data structure and io functions.

The Label Suggestions JSON file format mentioned above to specify a list of suggested names and optional colors for new labels is as follows:

Jun 27 2022, 5:43 AM · MITK (v2022.10)
kislinsk added a comment to T29160: [Segmentation] Worklist specification, data structure and io functions.

The first version of the file format used in T29159 is as follows:

Jun 27 2022, 5:41 AM · MITK (v2022.10)
kislinsk added a comment to T29161: [Segmentation] Extend flow bench control view to support worklists.

Done in T29159.

Jun 27 2022, 4:12 AM · MITK (v2022.10)
kislinsk added a comment to T29159: [Segmentation] Flow bench worklist feature .

The feature is ready for demonstration.

Jun 27 2022, 4:10 AM · MITK (v2022.10)

Jun 15 2022

kislinsk edited projects for T29213: [Levelwindow] Preset definition does not allow floating point numbers, added: MITK (v2022.10); removed MITK.
Jun 15 2022, 11:06 AM · MITK (v2022.10)
kislinsk added a comment to T29213: [Levelwindow] Preset definition does not allow floating point numbers.

In case the number is already serialized as floating point instead of an integer it is probably an i18n issue regarding the difference of the decimal point . and , in English and German locales. We had these issues quite often in the past and the solution to such issues is to enforce the neutral locale while serializing/deserializing on the streams. Just search for "imbue" in all of MITK's .cpp files for examples. There's also the LocaleSwitch class but I think I can remember that there's an issue with it. Still both solutions can be found many times in MITK.

Jun 15 2022, 11:05 AM · MITK (v2022.10)
kislinsk added a comment to T28285: DICOM with 'ä' in filename not readable on Windows.

Deleted branch from rMITK MITK: bugfix/T28285-Windows-UTF-8.

Jun 15 2022, 10:58 AM · Checklist, MITK (v2022.10)

Jun 9 2022

kislinsk added a comment to T29159: [Segmentation] Flow bench worklist feature .

Pushed new branch to rMITK MITK: feature/T29159-SegmentationTasks.

Jun 9 2022, 4:47 AM · MITK (v2022.10)

Jun 8 2022

kislinsk closed T29082: MITK-IGT: XML logging is broken as Resolved.
Jun 8 2022, 4:20 PM · MITK (v2022.10), Pull Request, IGT
kislinsk added a comment to T29082: MITK-IGT: XML logging is broken.

Deleted branch from rMITK MITK: bugfix/T29082-FixXMLLogging.

Jun 8 2022, 4:19 PM · MITK (v2022.10), Pull Request, IGT
kislinsk committed rMITK9dd2a51fd669: Merge remote-tracking branch 'Alfred-Franz/T29082-FixXMLLogging' into… (authored by kislinsk).
Merge remote-tracking branch 'Alfred-Franz/T29082-FixXMLLogging' into…
Jun 8 2022, 4:19 PM
kislinsk committed rMITKcfb78c0e2f16: Merge branch 'bugfix/T29082-FixXMLLogging' into develop (authored by kislinsk).
Merge branch 'bugfix/T29082-FixXMLLogging' into develop
Jun 8 2022, 4:19 PM
kislinsk added a comment to T29082: MITK-IGT: XML logging is broken.

Pushed new branch to rMITK MITK: bugfix/T29082-FixXMLLogging.

Jun 8 2022, 4:18 PM · MITK (v2022.10), Pull Request, IGT
kislinsk claimed T29082: MITK-IGT: XML logging is broken.
Jun 8 2022, 4:16 PM · MITK (v2022.10), Pull Request, IGT
kislinsk committed rMITKab1a5a5b21a9: Add JSON for Modern C++ as default dependency (authored by kislinsk).
Add JSON for Modern C++ as default dependency
Jun 8 2022, 3:58 PM
kislinsk committed rMITKad80a8f65314: Migrate to JSON for Modern C++ [1/n] (authored by kislinsk).
Migrate to JSON for Modern C++ [1/n]
Jun 8 2022, 3:58 PM
kislinsk committed rMITKc2a2b1b083a2: Migrate to JSON for Modern C++ [2/n] (authored by kislinsk).
Migrate to JSON for Modern C++ [2/n]
Jun 8 2022, 3:58 PM
kislinsk committed rMITKbe35684eaf3c: Migrate to JSON for Modern C++ [3/n] (authored by kislinsk).
Migrate to JSON for Modern C++ [3/n]
Jun 8 2022, 3:58 PM
kislinsk committed rMITK6769bcb3d419: Migrate to JSON for Modern C++ [4/n] (authored by kislinsk).
Migrate to JSON for Modern C++ [4/n]
Jun 8 2022, 3:58 PM
kislinsk committed rMITK389bad5c7a4c: Migrate to JSON for Modern C++ [5/5] (authored by kislinsk).
Migrate to JSON for Modern C++ [5/5]
Jun 8 2022, 3:58 PM
kislinsk committed rMITK4e902c5bf61d: Make public dependencies explicitly public (authored by kislinsk).
Make public dependencies explicitly public
Jun 8 2022, 3:58 PM
kislinsk closed T29208: Introduce sophisticated JSON library as Resolved by committing rMITK1ec01465bd22: Introduce JSON for Modern C++.
Jun 8 2022, 3:58 PM · MITK (v2022.10)
kislinsk committed rMITK1ec01465bd22: Introduce JSON for Modern C++ (authored by kislinsk).
Introduce JSON for Modern C++
Jun 8 2022, 3:58 PM

Jun 7 2022

kislinsk claimed T29159: [Segmentation] Flow bench worklist feature .
Jun 7 2022, 10:56 PM · MITK (v2022.10)
kislinsk added a comment to T28274: [Volume Visualization] Volume Rendering for 4D images does only work on timestep 0 or not at all.

Deleted branch from rMITK MITK: bugfix/T28274-volumerendering-multiple-timesteps.

Jun 7 2022, 2:34 PM · Restricted Project, MITK (v2022.04), Request for Discussion
kislinsk added a revision to T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices: Unknown Object (Differential Revision).
Jun 7 2022, 2:32 PM · MITK
kislinsk added a comment to T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices.

Deleted branch from rMITK MITK: feature/T28230-ResampleImageToReference.

Jun 7 2022, 2:32 PM · MITK
kislinsk added a comment to T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices.

Deleted branch from rMITK MITK: T28230-ResampleImageToReference.

Jun 7 2022, 2:32 PM · MITK
kislinsk added a comment to T28455: RT struct 3D visibility is not working correctly.

Deleted branch from rMITK MITK: bugfix/T28455-rt-struct-3d-visibility.

Jun 7 2022, 2:26 PM · MITK (v2021.10)
kislinsk added a comment to T28354: Update MITK documentation on CMAKE build for plugins.

Deleted branch from rMITK MITK: feature/T28354-cmake_faq.

Jun 7 2022, 2:24 PM · Next Milestone, MITK (v2021.10)
kislinsk added a comment to T28406: [Segmentation] Examine Live-wire tool for different costfunctions/behavior.

Deleted branch from rMITK MITK: feature/T28406-PatchForTestingLiveWireBehavior.

Jun 7 2022, 2:23 PM · MITK
kislinsk added a comment to T27701: Overhaul or remove PluginGenerator.

Deleted branch from rMITK MITK: bugfix/T27701-PluginGenerator.

Jun 7 2022, 2:18 PM · MITK, Next Milestone
kislinsk added a comment to T28737: Remove last remains of .pic support.

Deleted branch from rMITK MITK: bugfix/T28737-RemovePicSupport.

Jun 7 2022, 2:15 PM · Breaking Change, MITK (v2021.10)
kislinsk added a comment to T28833: Label masks have wrong geometry.

Deleted branch from rMITK MITK: bugfix/T28833-FixGeometryOfLabelMaskImages.

Jun 7 2022, 2:14 PM · MITK
kislinsk updated the task description for T29208: Introduce sophisticated JSON library.
Jun 7 2022, 9:47 AM · MITK (v2022.10)
kislinsk added a revision to T29208: Introduce sophisticated JSON library: Unknown Object (Differential Revision).
Jun 7 2022, 1:14 AM · MITK (v2022.10)

Jun 5 2022

kislinsk added a comment to T29208: Introduce sophisticated JSON library.

Pushed new branch to rMITK MITK: feature/T29208-JSONForModernC++.

Jun 5 2022, 4:31 AM · MITK (v2022.10)
kislinsk moved T29208: Introduce sophisticated JSON library from Backlog to Cycle on the MITK (v2022.10) board.
Jun 5 2022, 4:26 AM · MITK (v2022.10)
kislinsk triaged T29208: Introduce sophisticated JSON library as Normal priority.
Jun 5 2022, 4:25 AM · MITK (v2022.10)

Jun 2 2022

kislinsk closed T29189: Software crashes when launching python console as Wontfix.

Thank you for the report. The Python plugin is labeled as experimental and is not used by us anymore since quite some time now. We don't recommend to use it anymore.

Jun 2 2022, 8:59 PM · MITK
kislinsk added a comment to T29195: Fix FlowBench argument parsing and icon resource access.

Deleted branch from rMITK MITK: bugfix/T29195-FixFlowBenchArgParsingAndIconLoading.

Jun 2 2022, 4:00 PM · MITK
kislinsk committed rMITK5936329a056b: Replace manual argument parsing with app config access (authored by kislinsk).
Replace manual argument parsing with app config access
Jun 2 2022, 3:59 PM
kislinsk committed rMITK97d21e25491f: Fix dependencies to have access to necessary resources and icons (authored by kislinsk).
Fix dependencies to have access to necessary resources and icons
Jun 2 2022, 3:59 PM
kislinsk committed rMITKa3f5676ce09e: Remove unused code path (authored by kislinsk).
Remove unused code path
Jun 2 2022, 3:59 PM
kislinsk committed rMITKc6183651ff3c: Fix FlowBench argument parsing and icon resource access (authored by kislinsk).
Fix FlowBench argument parsing and icon resource access
Jun 2 2022, 3:59 PM
kislinsk closed T29195: Fix FlowBench argument parsing and icon resource access as Resolved by committing rMITKc6183651ff3c: Fix FlowBench argument parsing and icon resource access.
Jun 2 2022, 3:59 PM · MITK
kislinsk added a revision to T29195: Fix FlowBench argument parsing and icon resource access: Unknown Object (Differential Revision).
Jun 2 2022, 2:19 PM · MITK
kislinsk added a comment to T29195: Fix FlowBench argument parsing and icon resource access.

Pushed new branch to rMITK MITK: bugfix/T29195-FixFlowBenchArgParsingAndIconLoading.

Jun 2 2022, 2:17 PM · MITK
kislinsk triaged T29195: Fix FlowBench argument parsing and icon resource access as Normal priority.
Jun 2 2022, 2:14 PM · MITK
kislinsk added a comment to T29158: [Segmentation] Custom list for optional label names.

Deleted branch from rMITK MITK: feature/T29158-CustomLabelSuggestions.

Jun 2 2022, 11:27 AM · MITK (v2022.10)
kislinsk added a comment to T29158: [Segmentation] Custom list for optional label names.

Deleted branch from rMITK MITK: feature/T29158-OptionallyAskForLabelNamesAndColors.

Jun 2 2022, 11:27 AM · MITK (v2022.10)
kislinsk committed rMITKd3a08fcf3715: Follow one definition rule (authored by kislinsk).
Follow one definition rule
Jun 2 2022, 11:26 AM
kislinsk committed rMITK574b951f12cf: Add preference for default label naming (authored by kislinsk).
Add preference for default label naming
Jun 2 2022, 11:26 AM
kislinsk committed rMITKb9e617d137ba: Optionally intervene default label naming with prompt (authored by kislinsk).
Optionally intervene default label naming with prompt
Jun 2 2022, 11:26 AM
kislinsk committed rMITK76ee5489fa88: Add command-line argument for label suggestions (authored by kislinsk).
Add command-line argument for label suggestions
Jun 2 2022, 11:26 AM
kislinsk committed rMITK9e86b53e0ac7: Set standard label suggestions internally (authored by kislinsk).
Set standard label suggestions internally
Jun 2 2022, 11:26 AM
kislinsk committed rMITKad284e0386a5: Add preferences for custom label name and color suggestions (authored by kislinsk).
Add preferences for custom label name and color suggestions
Jun 2 2022, 11:26 AM
kislinsk committed rMITK45205c38c0e8: Modernize QmitkNewSegmentationDialog (authored by kislinsk).
Modernize QmitkNewSegmentationDialog
Jun 2 2022, 11:26 AM
kislinsk committed rMITK97516d76ae36: Also adapt label text in RenameLabel mode (authored by kislinsk).
Also adapt label text in RenameLabel mode
Jun 2 2022, 11:26 AM
kislinsk committed rMITK45ebb5c40086: Disable default label naming when label suggestions are enforced (authored by kislinsk).
Disable default label naming when label suggestions are enforced
Jun 2 2022, 11:26 AM
kislinsk committed rMITK5d1b8fa64660: Allow custom label name and color suggestions (authored by kislinsk).
Allow custom label name and color suggestions
Jun 2 2022, 11:26 AM
kislinsk committed rMITKd020f050d7bd: Fix newly introduced copy & paste error (authored by kislinsk).
Fix newly introduced copy & paste error
Jun 2 2022, 11:26 AM
kislinsk committed rMITK193befc69858: Optionally remove existing label names from label suggestions (authored by kislinsk).
Optionally remove existing label names from label suggestions
Jun 2 2022, 11:26 AM
kislinsk committed rMITK81e6846444e0: Add information about custom label suggestions to the user manual (authored by kislinsk).
Add information about custom label suggestions to the user manual
Jun 2 2022, 11:26 AM
kislinsk committed rMITK7366a123981d: Fix erroneous color value parsing (authored by kislinsk).
Fix erroneous color value parsing
Jun 2 2022, 11:26 AM
kislinsk committed rMITK1e329ab2dfb2: Rename variables (authored by kislinsk).
Rename variables
Jun 2 2022, 11:26 AM
kislinsk committed rMITK324954680f1c: Fix unused variable warning due to structured binding (authored by kislinsk).
Fix unused variable warning due to structured binding
Jun 2 2022, 11:26 AM
kislinsk committed rMITK5dd4ba85b7bc: Generalize description of label suggestions (authored by kislinsk).
Generalize description of label suggestions
Jun 2 2022, 11:26 AM
kislinsk closed T29158: [Segmentation] Custom list for optional label names as Resolved by committing rMITKa9242aa9966a: Allow custom label name and color suggestions.
Jun 2 2022, 11:26 AM · MITK (v2022.10)
kislinsk closed T29158: [Segmentation] Custom list for optional label names, a subtask of T29157: NCT ISSO Annotation Support with MITK Segmentation Flow, as Resolved.
Jun 2 2022, 11:26 AM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk committed rMITKa9242aa9966a: Allow custom label name and color suggestions (authored by kislinsk).
Allow custom label name and color suggestions
Jun 2 2022, 11:26 AM

Jun 1 2022

kislinsk added a revision to T29158: [Segmentation] Custom list for optional label names: Unknown Object (Differential Revision).
Jun 1 2022, 2:20 PM · MITK (v2022.10)
kislinsk moved T29158: [Segmentation] Custom list for optional label names from Segmentation to Cycle on the MITK (v2022.10) board.
Jun 1 2022, 1:11 PM · MITK (v2022.10)

May 31 2022

kislinsk added a comment to T29158: [Segmentation] Custom list for optional label names.

I finished this task in feature/T29158-CustomLabelSuggestions. After a mental break I will go through the code and double-check for any business logic bugs or edge cases but I am confident. Will create a Diff later or tomorrow morning.

May 31 2022, 3:21 PM · MITK (v2022.10)

May 30 2022

kislinsk added a comment to T29158: [Segmentation] Custom list for optional label names.
In T29158#238958, @floca wrote:
  1. We should use the same format for the label preset file and this custom labels file. Everything else would be inefficient.
May 30 2022, 10:41 AM · MITK (v2022.10)
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