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[Segmentation] Correctly implement interpolation features for Multilabel Segmentation View
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Description

Implement interpolation for multilabel segmentations. It is still missing. *OMG*

Revisions and Commits

Restricted Differential Revision
rMITK MITK
Restricted Differential RevisionrMITK8ddb4bb4b54b multilabel interpolation functionality added

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StatusAssignedTask
 ResolvedkislinskT27319 [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View
 ResolvedkislinskT27436 Deactivate interpolation widget in Multilabel Segmentation View till it interpolation is correctly supported
 Resolved• s349iT26172 2D interpolation in MultiLabelSegmentation Editor only works for 1. label
OpenflocaT28524 Refactor LabelSetImage and associated classes.
 ResolvedflocaT28525 Design refactoring of LabelSetImage and associated classes
 ResolvedflocaT28140 [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems
 ResolvedflocaT28139 [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage
 DuplicateNoneT16153 [Segmentation] Jump to center of mass of segmentation on click
 ResolvedflocaT28549 Remove deprecated functions from classes involved in the LabelSetImage refactoring
 ResolvedkislinskT28561 Refactor/Fix mitk::SegmentationInteractor::ChangeActiveLabel
 ResolvedflocaT23742 Implement proof of concept for new segmentation data type
 WontfixNoneT23772 Implement adaptor between new segmentation data type and current segmentation data type
 ResolvedkislinskT23867 Improve mitk::WeakPointer
 ResolvedkislinskT23971 Implement robust, easy-to-use ExtractSliceFilter
 WontfixNoneT24303 A segmentation should generate all DICOM relevant IDs as soon as it can be referenced.
 ResolvedflocaT29204 [SEG] Rework properties of Label class + add instance information
 ResolvedflocaT29474 [SEG] Remove exterior label
 OpenflocaT30194 [SEG] Refactor LabelSetImage to MultiLabelSegmentation class
 ResolvedflocaT30294 {SEG] Remove label set structure
 ResolvedflocaT29105 [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps
 Resolved• s349iT29060 [Segmentation] Glitch in label color after 3d-interpolation

Event Timeline

kislinsk triaged this task as High priority.Apr 16 2020, 10:01 AM
kislinsk created this task.
kalali added a subscriber: kalali.May 5 2020, 11:31 AM

For MITK 2020 I would remove them since it doesn't seem feasible with time constraints (so change task to wishlist and change title to implement interpolation).

floca added a project: Cleared.May 8 2020, 10:46 AM
floca renamed this task from Either remove interpolation widgets from Multilabel Segmentation View or implement them to [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.May 20 2020, 6:55 PM
floca updated the task description. (Show Details)
floca edited projects, added MITK, Restricted Project; removed MITK (v2021.02).May 20 2020, 7:01 PM
floca added a subscriber: floca.

I keept the priority (as it is important im ML segmentation should be realy be able to replace everything) and moved it back into "MITK" as it is not realistic to make it in this cycle. We can reevaluate it later .

kislinsk closed subtask T27436: Deactivate interpolation widget in Multilabel Segmentation View till it interpolation is correctly supported as Resolved.Jun 3 2020, 10:20 AM
kalali added a parent task: T27807: [MultiLabel Segmentation] Inspection of module and plugin.Oct 1 2020, 2:51 PM
kalali merged a task: T22330: 3D and 2D interpolation does not work in the multilabelsegmentation plugin.Oct 1 2020, 3:02 PM
kalali added subscribers: • goch, • ordas.
floca edited projects, added MITK (v2021.10); removed MITK.Jun 7 2021, 9:07 AM
floca added a subtask: T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label .
floca moved this task from Backlog to Segmentation on the MITK (v2021.10) board.
floca raised the priority of this task from High to Unbreak Now!.Jun 7 2021, 9:14 AM
floca added a parent task: T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.
kislinsk edited projects, added MITK (v2022.04); removed MITK (v2021.10).Nov 10 2021, 4:32 PM
floca moved this task from Backlog to Segmentation on the MITK (v2022.04) board.Nov 17 2021, 11:56 AM
floca added a subtask: T28524: Refactor LabelSetImage and associated classes..Jan 19 2022, 5:44 PM
floca edited projects, added MITK, Next Milestone; removed MITK (v2022.04).Jan 20 2022, 9:33 AM
kalali lowered the priority of this task from Unbreak Now! to Normal.Jan 20 2022, 11:51 AM

We decided to have a workaround for this issue (related to T28640: [Segmentation] Add tool checks for dynamic plugin view) so that this tasks does not block T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.
We will continue working on this issue later this year if T28524: Refactor LabelSetImage and associated classes. is done.

kalali removed parent tasks: T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation, T27807: [MultiLabel Segmentation] Inspection of module and plugin.Jan 20 2022, 1:58 PM
kalali mentioned this in T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.Feb 25 2022, 10:48 PM
kalali mentioned this in T28826: [Segmentation][Interpolation] Color of 2D interpolated slice is not yellow but segmentation color.Mar 3 2022, 1:09 PM
kalali mentioned this in rMITK32320c0eb8a1: Update interpolator widget if only a single label is present.Mar 21 2022, 6:36 AM
kislinsk reopened this task as Open.Apr 20 2022, 11:23 AM
kislinsk closed this task as a duplicate of T28827: [Segmentation][Interpolation] Color of 3D interpolated segmentations is red, not green.
kislinsk merged a task: T28827: [Segmentation][Interpolation] Color of 3D interpolated segmentations is red, not green.
kislinsk added subscribers: • kleina, s434n.
floca edited projects, added MITK (v2022.10); removed Next Milestone, MITK.May 13 2022, 7:29 PM
floca moved this task from Backlog to Segmentation on the MITK (v2022.10) board.May 16 2022, 12:31 PM
• s349i claimed this task.May 16 2022, 1:23 PM
• s349i added a subscriber: • s349i.
floca moved this task from Segmentation to Cycle on the MITK (v2022.10) board.May 18 2022, 10:51 AM
• s349i added a comment.May 30 2022, 11:43 AM

Pushed new branch to rMITK MITK: feature/T27319-multilabelInterpolation.

• s349i removed a project: Cleared.May 31 2022, 8:04 AM
• s349i added a comment.May 31 2022, 11:15 AM

D657 should give surface interpolation multilablel functionality. Contour interpolation also partially.

kislinsk added a revision: Restricted Differential Revision.Jun 29 2022, 10:21 AM
kislinsk added a revision: Restricted Differential Revision.
• s349i added a subtask: T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps.Sep 14 2022, 10:42 AM
• s349i added a subtask: T29060: [Segmentation] Glitch in label color after 3d-interpolation.Sep 14 2022, 10:46 AM
kislinsk edited projects, added MITK (v2023.04); removed MITK (v2022.10).Nov 23 2022, 3:52 PM
floca moved this task from Backlog to Cycle on the MITK (v2023.04) board.Nov 23 2022, 3:55 PM
s434n added a project: Request for Discussion.Feb 13 2023, 1:26 PM
s434n moved this task from Backlog to MITK Meeting on the Request for Discussion board.
s434n removed a project: Request for Discussion.Feb 22 2023, 5:07 PM
kislinsk claimed this task.Mar 1 2023, 12:39 PM
kislinsk added a comment.Mar 1 2023, 12:40 PM

Pushed new branch to rMITK MITK: feature/T27319-IntegrationBranch.

kislinsk mentioned this in rMITKfc5ba98d32b1: Merge branch 'feature/T27319-IntegrationBranch' into develop.Mar 1 2023, 12:40 PM
kislinsk added a commit: rMITK8ddb4bb4b54b: multilabel interpolation functionality added.
kislinsk added a comment.Mar 1 2023, 12:41 PM

Deleted branch from rMITK MITK: feature/T27319-IntegrationBranch.

kislinsk added a comment.Mar 1 2023, 12:42 PM

Deleted branch from rMITK MITK: feature/T27319-multilabelInterpolation.

kislinsk closed this task as Resolved.Mar 1 2023, 12:42 PM
kislinsk closed subtask T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label as Resolved.
kislinsk closed subtask T29060: [Segmentation] Glitch in label color after 3d-interpolation as Resolved.Mar 1 2023, 12:55 PM
kislinsk mentioned this in T29488: 2023 Week 11 (Mid March).Mar 16 2023, 6:45 AM
floca closed subtask T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps as Resolved.Mar 11 2024, 10:54 AM
floca reopened subtask T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps as Open.
floca closed subtask T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps as Resolved.Mar 11 2024, 10:56 AM
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