New remote branch pushed: bug-15802-WrongUsageOfVtkSmartPointer

[a40958]: Merge branch 'bug-15802-WrongUsageOfVtkSmartPointer'

Merged commits:

2013-08-07 17:22:20 Michael Brehler [ff619a]
corrected smart pointers

Crash only occurs under linux

[c21746]: Merge branch 'bug-15496-QmitkExtAndAdaptiveRegionGrowing'

Merged commits:

2013-10-09 16:58:23 Michael Brehler [7d85c1]
deprecated getpixelvaluebyworldcoordinate removed

New remote branch pushed: bug-15486-TransformGeometryByMatrixOperation

[0c2039]: Merge branch 'bug-15486-ApplyMatrixTransform'

Merged commits:

2013-07-02 10:39:41 Michael Brehler [612b3c]
Added a ApplyMatrixOperation for tranforming a geometry by a vtkMatrix4x4

The operation is working only testcases are missing. For this purpose a new bug was created (T16482).

New remote branch pushed: bug-15486-ApplyMatrixTransform

New remote branch pushed: bug-15171-SegmentationRedesignOtsu

volume vis opacity fields are too small

With the redesign of the segmentation tools and the new Otsu3DTool the problem is solved.

New remote branch pushed: bug-14507-ItegrationOfITKOpenCVImageBridge

[dcfd5c]: Merge branch 'bug-14483-WrongVtkSmartPointerUsageImageStatisticsCalcul

Merged commits:

2013-10-01 16:46:52 Michael Brehler [a01144]
COMP: Revert SmartPointerUsage because of test

New remote branch pushed: bug-14483-WrongVtkSmartPointerUsageImageStatisticsCalculator

[9bfee0]: Merge branch 'bug-14482-WrongUsageOfVtkSmartPointers'

Merged commits:

2013-08-07 16:56:56 Michael Brehler [840275]
corrected vtk smart pointer usage

[57996d]: Merge branch 'bug-14483-WrongVtkSmartPointerUsageImageStatisticsCalcul

Merged commits:

2013-09-24 09:55:12 Michael Brehler [d68bd5]
Corrected SmartPointer usage

New remote branch pushed: bug-14482-WrongUsageOfVtkSmartPointers

We were unable to reproduce the bug.

The segmentation plugin thinks of binary images as segmentations and thatfor disables iteraction with tools.

[2f4000]: Merge branch 'bug-13967-TypoInLevelwindowSliderContextMenu'

Merged commits:

2013-07-10 15:27:42 Michael Brehler [b872a1]
corrected typos

New remote branch pushed: bug-13967-TypoInLevelwindowSliderContextMenu

I can not reproduce this on Windows 64-bit. Tested with several images.

The crash occurs with MITK and MITK-mbi.

Seems to be a x64 problem. With my 32-bit laptop (Qt 4.8.3 32bit, VS2010, Windows8, latest master) the workbench starts without problems in release-mode.

The PATH is set accordingly and starting the workbench with the batch results in the same error. We checked that already.

The new implementation in QmitkIOUtil (replaces QmitkCommonFunctionality) seems to correct this.

[4a1bdd]: Merge branch 'bug-13192-integrate-blueberry-examples'

Merged commits:

2012-12-03 11:43:58 Michael Brehler [c69b74]
corrected wrong references in documentation

-added missing documentation for one example
-added description for all examples
-fixed broken link

Confirm that on windows. More specifically, the crash only occurs when aligning the figure on the upper boundary of the rendering window.

Possibilty 3 works for me.

[655936]: Merge branch 'bug-13093-ApplyOtsuSegmentationLUT'

Merged commits:

2012-10-10 17:27:07 Michael Brehler [231b8e]
minor change

The bug is solved in the current mitk master. The OtsuAction is deprecated (T16018) and the fix from branch bug-13038-noOtsuSegmentationResult is already included in the redesigned Otsu3DTool.

[a8a9f0]: Merge branch 'bug-13033-OtsuSegmentationHelpButton'

Merged commits:

2012-09-12 14:17:59 Michael Brehler [9762db]
deleted the ? button in dialog and enabled Qt::WaitCursor during calculation

The Region Growing tool is not suited for float images by design. More precisely, the itkAdaptiveThresholdIterator is not. Hence, a modified version has to be developed that increments the threshold boundaries in a non-integer manner.

New remote branch pushed: bug-12900-PluginGeneratorWhitespaces

[5b5cc3]: Merge branch 'bug-12900-PluginGeneratorWhitespaces'

Merged commits:

2013-01-16 16:47:41 Michael Brehler [68156e]
removed trailing-whitespaces from Licence file

No problems with the bugfix in my example (still working).

tif-Image

this tif image is not render correctly in MITK

Even with Caspars tricks (and new dartclient script) tests are still failing on MBI058...

[fdd3a1]: Merge branch 'bug-12195-SaveLoadProjectTakesTooLong'

Merged commits:

2013-02-06 14:27:55 Michael Brehler [bc5e26]
changed temp path from home to local

A comparison of the callgrind results from a single nrrd file and a scene file with the same image would be perfect. The method GetScalarValueMin(int) is also called when the nrrd file is opened (this is not the problem).

New remote branch pushed: bug-12195-SaveLoadProjectTakesTooLong

Loaded 15 Calcaneus-images (nrrd files) in 10 seconds and saved them as a MITK scene file (5 minutes). Loading the saved scene file took again about 5 minutes. Very annoying if you want to show a physician some datasets...

The compression is done by the Poco::Zip:Compress class. Changing the compression level from default (maximum) to CL_SUPERFAST or using another compression method (default is deflate) didn't change anything. So the compression seems not to be the problem.

[a7a09c]: Merge branch 'bug-11629-ImproveTestNavigationDataToNavigationDataFilte

Merged commits:

2012-05-16 16:58:48 Michael Brehler [93cd59]
test cases extended

[1a2964]: Merge branch 'bug-11181-messedUpNodeOrder'

Merged commits:

2012-12-07 14:42:55 Michael Brehler [e215b4]
removed commented code-segments

[c76848]: Merge branch 'bug-11181-messedUpNodeOrder'

Merged commits:

2012-12-10 20:37:47 Michael Brehler [fdcd29]
COMP: Works for me now.

New remote branch pushed: bug-11181-messedUpNodeOrder

Code is now clean...

Fixed:
The layper property of the saved scene is now corretly used to order the nodes when loading a scene file => saved order is restored.

Interestingly the volumerenderings works with the CPU rendering options. The GPU options show only the segmentation with the lowest layer-value.