At least for XNAT this was recently resolved in T26449: XNAT connection failes due to missing OpenSSL connections.
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Dec 7 2020
would defer to after release
please close if ok
added to documentation of as.challenge():
(arg annotator:) If multiple annotators annotated the test cases, a string specifying the name of the column that contains the annotator identifiers. Only applies to rang-then-aggregate. Use with caution: Currently not tested.
added
podium(ranking)
to vignette.
podium() does have a different syntax for layouting (it is not ggplot2 but base graphics) but vignette does not describe layouting for ggplot2 plots either
report() does not know what type of consensus ranking method had been used.
I added sentence
"Consensus ranking according to mean ranks across tasks if method="euclidean" where in case of ties (equal ranks for multiple algorithms) the average rank is used, i.e. ties.method="average"."
to help for consensus() and would suggest to also add this to the vignette/readme, but not to report. Could someone of you please take care of this?
This task will be fixed with D447 (see https://phabricator.mitk.org/D447?vs=2005&id=2006#toc).
This task will be fixed with D447 (see D448#13472).
@eisenman do you want to do this with roxygen?
kept select.if(), winner(), extract.workfolow and compareRanks()
and removed everything not supported anymore.
as.warehouse (benchmarkUtils) is not exported, recommend to leave because this may come handy for specific situations
removed second()
Dec 6 2020
Before:
Pushed new branch bugfix/T26237-ImprovePerformance.
A profiling session revealed that a substantial amount of time during interaction with the 2d widgets is spent by the ITK object factory in the context of mitk::BaseGeometry when creating new instances of itk::BoundingBox, itk::VectorContainer, and itk::ScalableAffineTransform.
Dec 4 2020
What is the problem?
in the extend of the vignette it would be simply
legend now always at bottom and dynamically adjusts to number of algorithms and algorithm name length.
Took me almost the day...
It will be automatically listed in the changelog table regardless of the task status. :)
Thanks. No it works again.
Maybe I should leave this task open until we came up with a minimum prototype...
Isn't (1) a requirement anyways? Let me just look it up in the Qt documentation...
Deleted branch bugfix/T28062-FixIsotropicWaveletsDep.
The actual issue seems to be network troubles so maybe a server is down or something similar. Should resolve itself either now/today or the next days. Anyway, as we now made the dependency explicit, this task was not a complete waste of time. :-)
Pushed new branch bugfix/T28062-FixIsotropicWaveletsDep.
max number of tasks / algorithms now 20 in stacked frequency and line plots, respectively for legend appear on right, otherwise put on bottom of plot. could also be put to lower number
only podium plots and line plots actually require algorithms in legend, otherwise algorithm is identifiable from x-axis or facet label. Now, these redundant legends are removed.
besides that stacked frequency plots have colored tasks and respective legend
I added an explicit private target dependency to IsotropicWavelets in BasicImageProcessing as it is the only module where it is used.
Argh... it is actually used in BasicImageProcessing without being specified as dependency. :-( I will investigate if it is just a header that is included or if we need to revert and try to fix the retrival issue of the remote module.
Deleted branch bugfix/T28062-RemoveITKIsotropicWaveletsDependency.
Pushed new branch bugfix/T28062-RemoveITKIsotropicWaveletsDependency.
Deleted branch bugfix/T28061-UseOfficialITKTarball.
Pushed new branch bugfix/T28061-UseOfficialITKTarball.