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Dec 14 2020

kalali moved T28111: Extend "Checkliste MultiLabel Segmentierung – 2D Segmentierung" from Backlog to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 1:24 PM · MITK (v2022.04)
kalali moved T28110: Extend checklists for multilabel segmentation view from Backlog to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 1:23 PM · MITK (v2022.04)
floca closed T22412: Workbench crashes when using 2D Region Growin on DWI Image (.nii) on Ubuntu 16.04 as Wontfix.

Closed. @neher or who ever might stumple upon the prolem again, is welcome to open it again and provide data. :)

Dec 14 2020, 1:07 PM · Missing Info, Request for Discussion, MITK (v2021.02)
kalali triaged T28111: Extend "Checkliste MultiLabel Segmentierung – 2D Segmentierung" as High priority.
Dec 14 2020, 12:52 PM · MITK (v2022.04)
thomass added a comment to T25152: Cannot compare TemporoSpatialStringProperty.

Since solution 1 worked well for me and seems to be more generic, I would vote for 1.

Dec 14 2020, 12:46 PM · Auto-closed, MITK
kalali triaged T28110: Extend checklists for multilabel segmentation view as High priority.
Dec 14 2020, 12:37 PM · MITK (v2022.04)
kalali updated the task description for T27506: Extend checklists for segmentation view.
Dec 14 2020, 12:31 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27906: Extend "Checkliste Segmentierung – Utilities".
Dec 14 2020, 12:31 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27873: Extend "Checkliste Segmentierung – Interpolation".
Dec 14 2020, 12:31 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Dec 14 2020, 12:30 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".
Dec 14 2020, 12:30 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27850: Extend "Checkliste Segmentierung – 3D Segmentierung".
Dec 14 2020, 12:30 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Dec 14 2020, 12:30 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".
Dec 14 2020, 12:29 PM · MITK (v2022.04), Cleared
kalali moved T28108: [Release Checklists] Prepare release checklists from Backlog to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 12:27 PM · MITK
kalali updated the task description for T28108: [Release Checklists] Prepare release checklists.
Dec 14 2020, 12:24 PM · MITK
kalali added a comment to T22412: Workbench crashes when using 2D Region Growin on DWI Image (.nii) on Ubuntu 16.04.

Also crashes with normal 4D images. In Multilabel segmentation 2D region crowing, too.

Dec 14 2020, 12:22 PM · Missing Info, Request for Discussion, MITK (v2021.02)
neher triaged T28109: Check correct association of Segs with origin DICOM as High priority.
Dec 14 2020, 12:21 PM · Kaapana (internal)
floca added a comment to T22412: Workbench crashes when using 2D Region Growin on DWI Image (.nii) on Ubuntu 16.04.

@neher or @jaegerp can someone provide test data? Otherwise I would close this task for now, because I cannot check or reproduce the problem without data.

Dec 14 2020, 12:15 PM · Missing Info, Request for Discussion, MITK (v2021.02)
floca added a comment to T27817: [Multilabel] Live Wire tool always assigns first label when being used with multiple labels.

Can D447 landed and this issue closed? If nothing speaks against it, it would be good, before I turning the rest of the seg tools upside down. Thanks.

Dec 14 2020, 12:11 PM · Cleared, MITK (v2021.02)
kalali added a parent task for T27506: Extend checklists for segmentation view: T28108: [Release Checklists] Prepare release checklists.
Dec 14 2020, 11:52 AM · MITK (v2022.04), Cleared
kalali added a subtask for T28108: [Release Checklists] Prepare release checklists: T27506: Extend checklists for segmentation view.
Dec 14 2020, 11:52 AM · MITK
kalali triaged T28108: [Release Checklists] Prepare release checklists as Normal priority.
Dec 14 2020, 11:52 AM · MITK
kalali moved T27506: Extend checklists for segmentation view from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:05 AM · MITK (v2022.04), Cleared
kalali moved T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:05 AM · MITK (v2022.04), Cleared
kalali moved T27737: Extend "Checkliste Segmentierung – Optionen" from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:05 AM · MITK (v2022.04), Cleared
kalali moved T27850: Extend "Checkliste Segmentierung – 3D Segmentierung" from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:05 AM · MITK (v2022.04), Cleared
kalali moved T27873: Extend "Checkliste Segmentierung – Interpolation" from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:04 AM · MITK (v2022.04), Cleared
kalali moved T27906: Extend "Checkliste Segmentierung – Utilities" from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:04 AM · MITK (v2022.04), Cleared
floca reopened T25152: Cannot compare TemporoSpatialStringProperty as "Open".

@thomass This is the issue we talked about last week when you hat problem to use predicates to find some nodes by DICOM tags values.

Dec 14 2020, 10:46 AM · Auto-closed, MITK

Dec 13 2020

floca claimed T28089: [CEST] Error loading custom data due to alleged spacing of 0.
Dec 13 2020, 10:03 PM · Auto-closed, Missing Info, Restricted Project, MITK
floca added a comment to T28089: [CEST] Error loading custom data due to alleged spacing of 0.
  1. Could you provide also a SS example. As it should also work with SS and I would like to know the reason.
  2. A MAC version will be available with the next public MITK release (planned for next january).
  3. Thanks for the example data. I have some questions regarding it:
Dec 13 2020, 10:03 PM · Auto-closed, Missing Info, Restricted Project, MITK

Dec 12 2020

kislinsk closed T28101: Early-out when CMake 3.19 is used as Resolved.
Dec 12 2020, 4:47 AM · MITK (v2021.02)
kislinsk added a comment to T28101: Early-out when CMake 3.19 is used.

Deleted branch bugfix/T28101-CMake3.19.

Dec 12 2020, 4:47 AM · MITK (v2021.02)
kislinsk committed rMITKeab123b123ea: Early out if CMake version is [3.19, 3.19.2) (authored by kislinsk).
Early out if CMake version is [3.19, 3.19.2)
Dec 12 2020, 4:47 AM
kislinsk committed rMITK5b214745c789: Merge branch 'bugfix/T28101-CMake3.19' into develop (authored by kislinsk).
Merge branch 'bugfix/T28101-CMake3.19' into develop
Dec 12 2020, 4:47 AM
kislinsk added a comment to T28101: Early-out when CMake 3.19 is used.

Pushed new branch bugfix/T28101-CMake3.19.

Dec 12 2020, 4:46 AM · MITK (v2021.02)
kislinsk updated subscribers of T28101: Early-out when CMake 3.19 is used.

Will be fixed very soon in CMake 3.19.2: https://gitlab.kitware.com/cmake/cmake/-/issues/21529

Dec 12 2020, 4:19 AM · MITK (v2021.02)

Dec 11 2020

kislinsk triaged T28101: Early-out when CMake 3.19 is used as Unbreak Now! priority.
Dec 11 2020, 2:45 PM · MITK (v2021.02)
kislinsk edited the content of Step 0 - Create a Phabricator account.
Dec 11 2020, 11:04 AM · Onboarding
kislinsk renamed Phabricator Onboarding from Onboarding to Phabricator onboarding.
Dec 11 2020, 10:34 AM · Onboarding
eisenman added a comment to T28097: test errors in aggregateThenRank and rankThenAggregate.
Dec 11 2020, 9:51 AM · challengeR (v1.0)
eisenman updated subscribers of T28097: test errors in aggregateThenRank and rankThenAggregate.

It works for me on the latest develop branch (#921705).

Dec 11 2020, 9:45 AM · challengeR (v1.0)

Dec 10 2020

eisenman created T28100: [dash] Decide on a file management strategy.
Dec 10 2020, 11:45 PM · webChallengeR
eisenman created T28099: [dash] Indicate progress of file upload.
Dec 10 2020, 11:28 PM · webChallengeR
thomass added a comment to T27689: RTDose image can not be serialized and workbench crashes upon loading.

I tried it with my current develop (not the latest due to ongoing QT issues - wip) and it resolves the last warning (predescibed dose) but not the others. According to the D449 this is the one you changed, so as expected I suppose :) As soon as I get the latest develop up and running I will check the diff further.

Dec 10 2020, 7:23 PM · Request for Discussion, MITK
floca claimed T27689: RTDose image can not be serialized and workbench crashes upon loading.

@thomass Please check the patch provided by https://phabricator.mitk.org/D449. It should solve you problem I hope. Would be cool if you could give feedback.

Dec 10 2020, 6:15 PM · Request for Discussion, MITK
wiesenfa moved T27292: Fix toolkit authors from In Progress to Done on the challengeR (v1.0) board.
Dec 10 2020, 1:25 PM · challengeR (v1.0)
wiesenfa moved T27292: Fix toolkit authors from Backlog to In Progress on the challengeR (v1.0) board.
Dec 10 2020, 1:25 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER9217054b61ae: fix authors (authored by wiesenfa).
fix authors
Dec 10 2020, 1:25 PM
wiesenfa created T28097: test errors in aggregateThenRank and rankThenAggregate.
Dec 10 2020, 11:11 AM · challengeR (v1.0)
wiesenfa moved T28085: Report generation is broken from In Progress to Done on the challengeR (v1.0) board.
Dec 10 2020, 11:09 AM · challengeR (v1.0)
wiesenfa moved T28085: Report generation is broken from Backlog to In Progress on the challengeR (v1.0) board.
Dec 10 2020, 11:09 AM · challengeR (v1.0)
wiesenfa claimed T28085: Report generation is broken.
Dec 10 2020, 11:09 AM · challengeR (v1.0)
wiesenfa committed rCHALLENGER484d1c685a70: bug fixes (authored by wiesenfa).
bug fixes
Dec 10 2020, 11:08 AM
wiesenfa committed rCHALLENGER8fe6dd4d9574: ensure english warnings while testing (authored by wiesenfa).
ensure english warnings while testing
Dec 10 2020, 11:08 AM
gaoh removed a project from T27968: CTP gets stuck on large import: Request for Discussion.
Dec 10 2020, 10:37 AM · Kaapana (internal)
gaoh moved T27968: CTP gets stuck on large import from Discussion to Backlog on the Kaapana (internal) board.

We need a dataset to reporduce the problem, to setup a testsetup.

Dec 10 2020, 10:37 AM · Kaapana (internal)
s669m moved T28091: (for Dec 10 )TFDA Mvp 1 Simple Demo & User-workflow upload provision from Discussion to Resolved on the Kaapana (internal) board.
Dec 10 2020, 10:04 AM · Request for Discussion, Kaapana (internal)
s669m closed T28091: (for Dec 10 )TFDA Mvp 1 Simple Demo & User-workflow upload provision as Resolved.
Dec 10 2020, 10:04 AM · Request for Discussion, Kaapana (internal)

Dec 9 2020

eisenman created T28095: [dash] Develop landing page.
Dec 9 2020, 6:27 PM · webChallengeR
eisenman moved T28094: [dash] Develop web app based on Dash from Backlog to In Progress on the webChallengeR board.
Dec 9 2020, 6:23 PM · webChallengeR
eisenman triaged T28094: [dash] Develop web app based on Dash as High priority.
Dec 9 2020, 6:22 PM · webChallengeR
floca added a comment to T27608: [MITKDoc] Documentation Refurbish - Developer Manual.

@kompan What is the status here? Is it finish. If not, what has to be done to close it. Should be done before we make a release in january and if much is left, we should know what to do. Thanks.

Dec 9 2020, 2:23 PM · MITK (v2024.12), Cleared
floca moved T28076: [Multilabel Segmentation] Corrector tool 2D does not respect multiple layers from Backlog to Segmentation on the MITK (v2021.02) board.
Dec 9 2020, 2:18 PM · MITK (v2021.02)
floca moved T22412: Workbench crashes when using 2D Region Growin on DWI Image (.nii) on Ubuntu 16.04 from Backlog to Segmentation on the MITK (v2021.02) board.
Dec 9 2020, 2:18 PM · Missing Info, Request for Discussion, MITK (v2021.02)
floca placed T22412: Workbench crashes when using 2D Region Growin on DWI Image (.nii) on Ubuntu 16.04 up for grabs.
Dec 9 2020, 2:18 PM · Missing Info, Request for Discussion, MITK (v2021.02)
s669m created T28091: (for Dec 10 )TFDA Mvp 1 Simple Demo & User-workflow upload provision.
Dec 9 2020, 12:06 PM · Request for Discussion, Kaapana (internal)
s669m moved T28043: TFDA MVP1-Tasks:Tools and Technologies from Discussion to Resolved on the Kaapana (internal) board.
Dec 9 2020, 12:02 PM · Restricted Project, Kaapana (internal)
s669m closed T28043: TFDA MVP1-Tasks:Tools and Technologies as Resolved.
Dec 9 2020, 12:02 PM · Restricted Project, Kaapana (internal)
makr added a comment to T28089: [CEST] Error loading custom data due to alleged spacing of 0.

thanks for reply and your help!

  1. I solved the problem by changing from SS to multiple slice sequence. However, I am still struggling to get an CEST parameter map. Is there an updated manual available? I attached some sample data as well, see comment 3.
  2. Windows 10. But would prefer if there is a MAC version available.
  3. please find the sample data here: https://wetransfer.com/downloads/15f5ec7d7e9396f1e2d6736dee8d9eed20201209090335/c188ee6f22a20cefbc955818f0f5557c20201209090357/dc6f49

Its a mouse with brain tumor and I used the following parameters (7T MRI): CEST ampl. 4%, B1:3uT, delta t: 90us, sweep from 2000 Hz in 200Hz steps to -2000Hz (10 to -10 ppm).

Dec 9 2020, 10:14 AM · Auto-closed, Missing Info, Restricted Project, MITK
kalali added a comment to T25152: Cannot compare TemporoSpatialStringProperty.

I vaguely remember what it was used for: In the context of SemanticRelations but I can't find a related commit. So I guess we just leave it as it is and see if it pops up (once we talk again about the SemanticRelations and its future use).

Dec 9 2020, 9:57 AM · Auto-closed, MITK

Dec 8 2020

kislinsk added a comment to T27689: RTDose image can not be serialized and workbench crashes upon loading.

If this is now a crash but wasn't before, the TinyXML-2 migration is also a good candidate.
edit: Oh, was already authored in August. Sorry for the noise.

Dec 8 2020, 8:18 PM · Request for Discussion, MITK
thomass added a comment to T27689: RTDose image can not be serialized and workbench crashes upon loading.

Might be related to T25305

Dec 8 2020, 6:38 PM · Request for Discussion, MITK
floca added a comment to T27153: Fit CRMO2-model to mean value of ROI.

@kompan Is this still open? You marked it in your report list as "in usage" or did you ment something else with "statsitical analysis of 17O data"?

Dec 8 2020, 4:25 PM · Restricted Project
floca added a project to T28089: [CEST] Error loading custom data due to alleged spacing of 0: Missing Info.

@makr Could you please let us know:

  1. if the problem still persists
  2. What OS do you use?
  3. Could you provide any kind of example data for us to reproduce the error?
Dec 8 2020, 3:53 PM · Auto-closed, Missing Info, Restricted Project, MITK
floca added a comment to CEST User Manual.

@makr Sorry for not responding directly. I was not aware that the comment section was open and I was not subscribed to the document thus recieved no notification. I hope you are still interested. I moved the issued to T28089. Would be great if you could have a look and give feedback. Thanks.

Dec 8 2020, 3:51 PM · MITK
floca triaged T28089: [CEST] Error loading custom data due to alleged spacing of 0 as Normal priority.
Dec 8 2020, 3:48 PM · Auto-closed, Missing Info, Restricted Project, MITK
m113r renamed T28014: Augmentation Refinement from Additional Augmentation Refinement to Augmentation Refinement.
Dec 8 2020, 1:18 PM · m113r
eisenman triaged T28085: Report generation is broken as High priority.
Dec 8 2020, 1:16 PM · challengeR (v1.0)
m113r moved T28014: Augmentation Refinement from Backlog to Experiment Backlog on the m113r board.
Dec 8 2020, 1:12 PM · m113r
kislinsk removed a project from T28062: Fix IsotropicWavelets (ITK) dependency: Noteworthy.
Dec 8 2020, 9:50 AM · MITK (v2021.02)

Dec 7 2020

kislinsk closed T28081: Create shortcuts for executables in Windows installers/packages, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Dec 7 2020, 10:15 PM · MITK, Cleared
kislinsk closed T28081: Create shortcuts for executables in Windows installers/packages as Resolved.
Dec 7 2020, 10:15 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T28081: Create shortcuts for executables in Windows installers/packages.

Deleted branch bugfix/T28081-ShortcutsInWindowsInstallers.

Dec 7 2020, 10:14 PM · Cleared, MITK (v2021.02)
kislinsk committed rMITK7ba5ffbb2e50: Create shortcuts in Windows installers/packages (authored by kislinsk).
Create shortcuts in Windows installers/packages
Dec 7 2020, 10:14 PM
kislinsk committed rMITKa9f7c91fd852: Remove redist part (authored by kislinsk).
Remove redist part
Dec 7 2020, 10:14 PM
kislinsk committed rMITKccbaf060bde7: Merge branch 'bugfix/T28081-ShortcutsInWindowsInstallers' into develop (authored by kislinsk).
Merge branch 'bugfix/T28081-ShortcutsInWindowsInstallers' into develop
Dec 7 2020, 10:14 PM
kislinsk added a comment to T28081: Create shortcuts for executables in Windows installers/packages.

Pushed new branch bugfix/T28081-ShortcutsInWindowsInstallers.

Dec 7 2020, 10:13 PM · Cleared, MITK (v2021.02)
kislinsk triaged T28081: Create shortcuts for executables in Windows installers/packages as Normal priority.
Dec 7 2020, 10:09 PM · Cleared, MITK (v2021.02)
kislinsk updated subscribers of T27196: Rewrite packaging of MITK.
Dec 7 2020, 10:07 PM · MITK, Cleared
floca added a project to T22412: Workbench crashes when using 2D Region Growin on DWI Image (.nii) on Ubuntu 16.04: Missing Info.
In T22412#93426, @goch wrote:

This crutch should be removed when redesigning the tools.

@floca I stumbled upon this and I was wondering if this crutch can be removed with the changes made in T27490.

May be. We would need to test it.
@neher do we have suiteable testdata?

Dec 7 2020, 9:12 PM · Missing Info, Request for Discussion, MITK (v2021.02)
kislinsk closed T28080: Microsoft Visual C++ Redistributable not included in packages anymore, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Dec 7 2020, 8:44 PM · MITK, Cleared
kislinsk closed T28080: Microsoft Visual C++ Redistributable not included in packages anymore as Resolved.
Dec 7 2020, 8:44 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T28080: Microsoft Visual C++ Redistributable not included in packages anymore.

Deleted branch bugfix/T28080-RedistPackagingAndNSISGenerator.

Dec 7 2020, 8:44 PM · Cleared, MITK (v2021.02)
kislinsk committed rMITKc63dd0997faa: Rely on InstallRequiredSystemLibraries to handle runtime DLLs (authored by kislinsk).
Rely on InstallRequiredSystemLibraries to handle runtime DLLs
Dec 7 2020, 8:44 PM
kislinsk committed rMITKb9f6499dd3f3: Merge branch 'bugfix/T28080-RedistPackagingAndNSISGenerator' into develop (authored by kislinsk).
Merge branch 'bugfix/T28080-RedistPackagingAndNSISGenerator' into develop
Dec 7 2020, 8:43 PM
kalali updated subscribers of T22412: Workbench crashes when using 2D Region Growin on DWI Image (.nii) on Ubuntu 16.04.
Dec 7 2020, 8:43 PM · Missing Info, Request for Discussion, MITK (v2021.02)
kalali reopened T22412: Workbench crashes when using 2D Region Growin on DWI Image (.nii) on Ubuntu 16.04 as "Open".
In T22412#93426, @goch wrote:

This crutch should be removed when redesigning the tools.

Dec 7 2020, 8:41 PM · Missing Info, Request for Discussion, MITK (v2021.02)
kislinsk added a comment to T28080: Microsoft Visual C++ Redistributable not included in packages anymore.

Pushed new branch bugfix/T28080-RedistPackagingAndNSISGenerator.

Dec 7 2020, 8:40 PM · Cleared, MITK (v2021.02)