Find the updated script here: https://github.com/MIC-DKFZ/agent-sam.git@v0.2
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Apr 29 2024
Apr 29 2024
floca added a revision to T30404: Fix QmitkMultiLabelTreeModelTest: Restricted Differential Revision.
floca moved T30403: 3D interpolation UX improvement using SAM tool from Backlog to Cycle on the MITK (v2024.06) board.
a178n closed T30354: [MedSAM] Update SAM python daemon script for MedSAM, a subtask of T30314: MedSAM in MITK, as Resolved.
a178n closed T30355: [Seg] MedSAM as new 2D Tool in MITK, a subtask of T30314: MedSAM in MITK, as Resolved.
a178n closed T30356: [MedSAM] Create Test user checklist, a subtask of T30314: MedSAM in MITK, as Resolved.
a178n closed T30357: [MedSAM] Add user documentaiton, a subtask of T30314: MedSAM in MITK, as Resolved.
MedSAM tool doxygen documention changes
MedSAM doku update
Minor typo fixes
MedSAM & SAM screenshot update
MedSAM tool user documention
Apr 28 2024
Apr 28 2024
a178n committed rMITKcbaf43055a1d: Python 3.12 support for TotalSeg & SAM installations (authored by a178n).
Python 3.12 support for TotalSeg & SAM installations
Python version range specification update
Python 3.12 support for TotalSeg & SAM
MedSAM tool inital changes
MedSAM tool minor update for testing
MedSAM Bounding box changes
MedSAM boundingbox bugfixes
Register boundbox in segmentation plugin
Add MedSAM code documentation
MedSAM Preference UI update
a178n committed rMITK2f365d2ccca4: Merge branch 'develop' into feature/T30355-medsam-tool (authored by a178n).
Merge branch 'develop' into feature/T30355-medsam-tool
a178n committed rMITKeb4eacd02549: Merge branch 'develop' into feature/T30355-medsam-tool (authored by a178n).
Merge branch 'develop' into feature/T30355-medsam-tool
a178n committed rMITK7e92989d521f: MedSAM "Reset RoI" will also clear preview segmentation if any (authored by a178n).
MedSAM "Reset RoI" will also clear preview segmentation if any
a178n committed rMITK527b63478043: MedSAM boundingbox coordinate extraction logic update (authored by a178n).
MedSAM boundingbox coordinate extraction logic update
a178n committed rMITK555bca428914: Model type preference change don't need reinit anymore (authored by a178n).
Model type preference change don't need reinit anymore
SAM tool install check updates
Reset Preview will be more responsive
a178n committed rMITK85eb9f1c4e42: Merge branch 'develop' into feature/T30355-medsam-tool (authored by a178n).
Merge branch 'develop' into feature/T30355-medsam-tool
a178n committed rMITK06812e8f1a0f: Kill process immediately when stderr event to prevent invalid ProcessID pointer (authored by a178n).
Kill process immediately when stderr event to prevent invalid ProcessID pointer
Medsam code refactoring changes
Change std::stringstream for std::string
MedSAM tool code
Apr 26 2024
Apr 26 2024
floca added a revision to T30402: [Segmentation] Dynamic segmentations shown across multiple timesteps: Unknown Object (Differential Revision).
s434n triaged T30402: [Segmentation] Dynamic segmentations shown across multiple timesteps as Unbreak Now! priority.
T30399-Fix_statistic_view_NA
floca closed T30399: [Statistics] Image row shows N/A if labels or multiple time steps are present as Resolved by committing rMITK01951ad1de6c: + fixed T30399.
+ fixed T30399
T30400-Fix_multi_label_thumbnail
floca closed T30400: [SEG] Preview in node selector is not correct., a subtask of T30401: Thumbnail image generation should be moved to QmitkNodeDescriptor, as Resolved.
floca closed T30400: [SEG] Preview in node selector is not correct. as Resolved by committing rMITK50fb9dd4b215: + fixed T30400.
+ fixed T30400
floca added a revision to T30399: [Statistics] Image row shows N/A if labels or multiple time steps are present: Unknown Object (Differential Revision).
T30272 Fix group index inconsistenties
floca committed rMITK4fb04869b5f1: Corrected default name for unnamed groups (numbering starts now with 1) (authored by floca).
Corrected default name for unnamed groups (numbering starts now with 1)
+ fixed text of delete dialogs
floca committed rMITK6c88f64903ca: Added methods for getting and setting group names (authored by floca).
Added methods for getting and setting group names
floca added a revision to T30400: [SEG] Preview in node selector is not correct.: Unknown Object (Differential Revision).
floca triaged T30401: Thumbnail image generation should be moved to QmitkNodeDescriptor as Normal priority.
Apr 25 2024
Apr 25 2024
floca triaged T30399: [Statistics] Image row shows N/A if labels or multiple time steps are present as Unbreak Now! priority.
QmitkMultiLabelInspector set node property
floca committed rMITK506368e887df: First draft for label highlight support in LabelSetImageVtkMapper2D (authored by floca).
First draft for label highlight support in LabelSetImageVtkMapper2D
removed unnecessary Modified()
floca committed rMITK60e07b084947: Ensure that lookup changes in MultiLabel model are propagated (authored by floca).
Ensure that lookup changes in MultiLabel model are propagated
floca committed rMITK6d55675397e4: Fixed updating of lookup table in visibility functions of (authored by floca).
Fixed updating of lookup table in visibility functions of
floca committed rMITK91e50ac631ed: simplified and streamlined LabelSetImageVtkMapper2D pipeline (authored by floca).
simplified and streamlined LabelSetImageVtkMapper2D pipeline
floca committed rMITK7448635ec8c3: Deactivate highlighting while opacity is changed in context menu (authored by floca).
Deactivate highlighting while opacity is changed in context menu
floca committed rMITK1d1e87ce9ce7: Proper support of label highlights in context menus (authored by floca).
Proper support of label highlights in context menus
floca committed rMITK6f300b9976e0: Optimized lookup table modification to speed up (authored by floca).
Optimized lookup table modification to speed up
floca committed rMITKf54f8ee1f0e9: 1st draft for simlpe 3D multi label segmentation mapper (authored by floca).
1st draft for simlpe 3D multi label segmentation mapper
floca committed rMITKf1650035ec4c: Adadpted Multilabel mapper to only process a group image if this (authored by floca).
Adadpted Multilabel mapper to only process a group image if this
floca committed rMITKc940deabeb0b: Remove label highlighting if mouse is moved out of a cell (authored by floca).
Remove label highlighting if mouse is moved out of a cell
floca committed rMITKd2648ef335bb: Clean up MultiLabelSegmentationVtkMapper3D draft and 2D mapper (authored by floca).
Clean up MultiLabelSegmentationVtkMapper3D draft and 2D mapper
Reduced unnecessary mapper data generation
Fixed gcc errors
Fixed some errors in the 3D volume viz
Fix opacity control in data manager
floca committed rMITKfd4e65fb9a02: Added visual hint for highlighted invisible labels (authored by floca).
Added visual hint for highlighted invisible labels
floca committed rMITK0469e14c872f: Deactivated 3D vizualitation of multi label for now (authored by floca).
Deactivated 3D vizualitation of multi label for now
T30387 highlight_labels
floca committed rMITK4c3faea624e7: fixed errors when the rendering plane is not intersecting the segmentation (authored by floca).
fixed errors when the rendering plane is not intersecting the segmentation
floca added a comment to T30387: [SEG] More visual feedback by supporting highlighted labels in render window..
Pushed new branch to rMITK MITK: feature/T30387-highlight_labels.
kislinsk closed T30332: Introduce toolbar visibility presets, a subtask of T30333: Add introductory startup dialog or Welcome page, as Resolved.
kislinsk closed T30332: Introduce toolbar visibility presets, a subtask of T30283: Make MITK Workbench more customizable for end-users, as Resolved.
Deleted branch from rMITK MITK: feature/T30332-ToolBarPresets.
Improve function name
kislinsk committed rMITK0761b60817c9: Allow showing Preferences dialog with a specific initial page (authored by kislinsk).
Allow showing Preferences dialog with a specific initial page
kislinsk committed rMITK51afc73671d6: Add startup dialog for optional preset selection (authored by kislinsk).
Add startup dialog for optional preset selection
kislinsk committed rMITK1459d22287d0: Improve appearance of disabled QAbstractItemViews in dark style (authored by kislinsk).
Improve appearance of disabled QAbstractItemViews in dark style
Add presets as resources
Execute startup dialog
kislinsk committed rMITK5f7a3eab7967: Prepend preset name as header to preset info (authored by kislinsk).
Prepend preset name as header to preset info
Add code comments
kislinsk committed rMITK7125f2653a44: Add comment about the (for now) internal preset file format (authored by kislinsk).
Add comment about the (for now) internal preset file format
kislinsk committed rMITK18b6a5be1202: Move GetViewsByCategory() to berry::IViewRegistry (authored by kislinsk).
Move GetViewsByCategory() to berry::IViewRegistry
kislinsk committed rMITK1fabbff0ffd5: Do not execute startup dialog if it should be skipped (authored by kislinsk).
Do not execute startup dialog if it should be skipped
kislinsk committed rMITK6beae5b17276: Move GetToolBars() to berry::IWorkbenchWindow (authored by kislinsk).
Move GetToolBars() to berry::IWorkbenchWindow